BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26860.2
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484464 jgi|Araly1|484464|fgenesh2_kg.5__456__AT3G26860.2 494 2e-139
Ahg924360 jgi|Araly1|924360|scaffold_105641.1 272 1e-72
Ahg936476 jgi|Araly1|936476|scaffold_500667.1 97.1 8e-20
> Ahg484464 jgi|Araly1|484464|fgenesh2_kg.5__456__AT3G26860.2
Length=348
Score = 494 bits (267), Expect = 2e-139
Identities = 323/350 (92%), Gaps = 4/350 (1%)
Strand=Plus/Plus
Query 19 CTACTTGTGTGTAGCTTTTGCATACTTGGCCATGTATCTAGCGCTGGAATCAGGATTGGT 78
||| ||||||||||| ||||| | |||||||||||||| ||||||||||||||||| |||
Sbjct 1 CTATTTGTGTGTAGCCTTTGCCTGCTTGGCCATGTATCCAGCGCTGGAATCAGGATCGGT 60
Query 79 AACGAACTCaaaaacaaaaaaCTCTTATGGATGAGATGTTATTCCAAAGATGACGTTATA 138
|||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||
Sbjct 61 AACGAACTCAAAAACAAAAAGCTCCTCTGGATGAGGTGTTATTCCAAAGATGACGTTATA 120
Query 139 GGTCCATTAATAATACCGATCGGAGGGCATAGGTTCAATTATTTTGGTACCAACATATTT 198
|||||| ||||||||| |||||||||||| |||||||||||||||||| ||| | |||
Sbjct 121 GGTCCAAAAATAATACCAATCGGAGGGCATTCGTTCAATTATTTTGGTACTAAC-T-TTT 178
Query 199 -G-CTACGACTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAA 256
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAGTACGACTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAA 238
Query 257 ACTTTACAGCATTTAAACTTTACAGTGCTTCAGATGATGGAGGCGTATGGGATTGGAGAG 316
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 ACTTTACAGCATTTAAACTTTACAGTGCTTCAGATGATGGCGGCGTATGGGATTGGAGAG 298
Query 317 CAAGAGAAGATGGGATCTATCTAAAGATAAAAGCTGAGAGAGGTGTTAAT 366
||||||||||||| |||||||||||||||| | |||||||| |||||||
Sbjct 299 CAAGAGAAGATGGAATCTATCTAAAGATAAGACCTGAGAGACATGTTAAT 348
> Ahg924360 jgi|Araly1|924360|scaffold_105641.1
Length=343
Score = 272 bits (147), Expect = 1e-72
Identities = 228/265 (86%), Gaps = 13/265 (5%)
Strand=Plus/Plus
Query 89 aaaacaaaaaaCTCTTATGGATGAGATGTTATTCCAAAGATGACGTTATAGGTCCATTAA 148
|||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 1 AAAACAAAAAACTCTTGTGGATGAGGTGTTATTCCAAAAATGACGTTATAGGTCCAAAAA 60
Query 149 TAATACCGATCGGAGGGCATAGGTT-CA-ATTATTTTGGTACCAACATATTTG-CTACGA 205
||||||| |||||||||||| || | || ||||| |||| ||||| || | |||||
Sbjct 61 TAATACCAATCGGAGGGCAT--TTTATAGATAATTTTCGTACTAACAT-TTGGAGTACGA 117
Query 206 CTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACCATCAAAACTTTACAG 265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 CTCGTTTCATGTGTACCTTGAGACAAGGGCCTAATTATAGACACTATCAAAACTTTACAG 177
Query 266 CATTTAAAC--TTTACAGTGCTTCAG-ATGATGGAGGCGTATGGGATTGGAGAGCAAGAG 322
||||||||| |||| || | || || |||||||| |||||||||||| ||||||||
Sbjct 178 CATTTAAACAATTTA--GTTATA-AGGATTATGGAGGCTTATGGGATTGGATAGCAAGAG 234
Query 323 AAGATGGGATCTATCTAAAGATAAA 347
||||| |||||| |||||| |||
Sbjct 235 AAGATAAAATCTATTTAAAGA-AAA 258
> Ahg936476 jgi|Araly1|936476|scaffold_500667.1
Length=381
Score = 97.1 bits (52), Expect = 8e-20
Identities = 91/110 (83%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 235 CCTAATTATAGACACCATCAAAACTTTACAGCATTTAAACTTTACAGTGCTTCA-GATGA 293
||||| |||||||| |||| |||||||||||||| || |||| ||| || | ||| |
Sbjct 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTG-TTAAGGATCA 245
Query 294 TGGAGGCGTATGGGATTGGAGAGCAAGAGAAGATGGGATCTATCTAAAGA 343
|||||| |||||||||||||||||||||||||||| || ||| | ||||
Sbjct 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGA 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13163678205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5