BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26880.1
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484466 jgi|Araly1|484466|fgenesh2_kg.5__458__AT3G26880.1 501 1e-141
Ahg936407 jgi|Araly1|936407|scaffold_500598.1 353 4e-97
> Ahg484466 jgi|Araly1|484466|fgenesh2_kg.5__458__AT3G26880.1
Length=377
Score = 501 bits (271), Expect = 1e-141
Identities = 343/378 (91%), Gaps = 4/378 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAACCTCTCAATCTTTCT-ATTTGTTGTTGGGCTTTGCATGATTAGTGATGTATA 59
||||||||| ||||||||||||| | ||||| |||| |||||||||||| ||||||||||
Sbjct 1 ATGAAAAACGTCTCAATCTTTCTGA-TTGTTTTTGGCCTTTGCATGATTGGTGATGTATA 59
Query 60 CGGaaaaaaaTCTACGATTACGGTCAAGAATGAATTAAATCCCAAAAACAAGAATA-TCC 118
|| ||||| |||| |||||| |||||||||||||| | |||||||| | || || |||
Sbjct 60 TGGGAAAAAGTCTATGATTACAGTCAAGAATGAATTCAGTCCCAAAAGC-AGGCTAGTCC 118
Query 119 TCAAGGTGCATTGTAAATCCAAAAACAACGATATTGGTGTAAAATATCTCAAAATTGGAG 178
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 119 TCAAGGTGCATTGTAAATCCAAAAACGACGATATTGGTATAAAATATCTCGAAATTGGAG 178
Query 179 AAGTTATGTCATTCAGCTTCAAGACCAACTTTTGGGGAACGACGGAATTTTGGTGCAACT 238
|| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 179 AAATAATGTCATTCAGCTTCAAGACAAACTTTTGGGGAACGACGGAATTTTGGTGCGACA 238
Query 239 TATATAAAGGACCTGATTATAAGCGTTATAGAGGTATTACTGCATATCAAGCTATAGGTT 298
||||||||||||||||||||||||||| ||||||| |||||||||||||||| | |||||
Sbjct 239 TATATAAAGGACCTGATTATAAGCGTTTTAGAGGTTTTACTGCATATCAAGCGAAAGGTT 298
Query 299 TGTTCGCCAAAGATGGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTC 358
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTTCGTTAAGGATGGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTC 358
Query 359 ATAAGGATTCGTTGCCTA 376
||||| ||| ||||||||
Sbjct 359 ATAAGAATTTGTTGCCTA 376
> Ahg936407 jgi|Araly1|936407|scaffold_500598.1
Length=334
Score = 353 bits (191), Expect = 4e-97
Identities = 240/264 (91%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 134 AATCCAAAAACAACGATATTGGTGTAAAATATCTCAAAATTGGAGAAGTTATGTCATTCA 193
||||||||||| |||| |||||| |||||||||||||| |||| ||| ||||||||||||
Sbjct 46 AATCCAAAAACGACGACATTGGTATAAAATATCTCAAATTTGGTGAAATTATGTCATTCA 105
Query 194 GCTTCAAGACCAACTTTTGGGGAACGACGGAATTTTGGTGCAACTTATATAAAGGACCTG 253
|||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 106 GCTTCAGGACCAACTTTTGGGGGACGACGGAATTTTGGTGCGACGTATATAAAGGACCTG 165
Query 254 ATTATAAGCGTTATAGAGGTATTACTGCATATCAAGCTA-TAGGTTTGTTCGCCAAAGAT 312
|||||||||||| ||||||| |||||||||||||||| | | ||||||||| || ||
Sbjct 166 ATTATAAGCGTTTTAGAGGTTTTACTGCATATCAAGCGAGCA-GTTTGTTCGTTAAGGAC 224
Query 313 GGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 GGATCATCGTATAATTGGTTAGCTAGAGATGATGGAATCTATTTTCATAAGGATTCGTTG 284
Query 373 CCTAGCTACTATAAAACTTATTGG 396
||||| |||||||| |||||||
Sbjct 285 CCTAGTTACTATAAGTTTTATTGG 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14422812642
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5