BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26890.1
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484471 jgi|Araly1|484471|fgenesh2_kg.5__463__AT3G26890.4 3347 0.0
Ahg493865 jgi|Araly1|493865|fgenesh2_kg.7__3298__AT5G41110.1 736 0.0
> Ahg484471 jgi|Araly1|484471|fgenesh2_kg.5__463__AT3G26890.4
Length=2440
Score = 3347 bits (1812), Expect = 0.0
Identities = 2263/2466 (92%), Gaps = 90/2466 (4%)
Strand=Plus/Plus
Query 223 GAAAGGGTAACTGCAATGAACTCTGTATCTGTCACCCTT-GCATTTCATGTAACTTCAGA 281
|||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 19 GAAAGGGTAACTGCAATGAACTCTGTATCTGTCA-CCTTCCCATTTCATGTAGCTTCAGA 77
Query 282 CTGTTCTGCCGTAAACCAATGTCGGATAAATGTTAAGTGTTTGGTTTCTTGTATGCGGGT 341
||| ||| || |||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 78 CTGCTCTTCCATAAATCAATGTCGGATAAATGTTAAGTGTTCGATTTCTTGTATGCGGGT 137
Query 342 CAGTAAGCAAGCAATGCACGAGTTGTGGATGCCTGTGACTGATACATAATTCTAGATTTT 401
| ||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 138 CTGTAGGCAAGCAATGCACGATTTGTGGATGCCTGTGACGGATACATAGTTCTAGATTTT 197
Query 402 TATTTATTGTTCTGTTAGAGATAGAGTTAGTCAGTATTGTTTATTTTCAAGGATTTGGTA 461
|||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 198 TATTTATTCTTCTGTTAGAGATAGAGGTAGTCAGTATTG-TTATTTTCAAGGATTTGGTA 256
Query 462 GTTTCTAGGGAGTTTTTAGATAATTAGGGATTTGGAAACTCACATCTCAGAAGTGACCAT 521
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 257 GTTTCTAGGGAGTTTCTAGATAAGTAGGGATTTGGAAACTCACATCTCAGAAGTGACCAT 316
Query 522 AAACCCTTTTACTTGATAA--------GAGCATTAGTTATGGGTCTGCCACAGACTGCTT 573
||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 317 AAACCCTTTTACTTGATAAATTTCATTGAGCATTAGTTATGGGTCTGCCACAAACTGCTT 376
Query 574 CAAGTGAACAATCCCAGGAAGCTTTGTCTACTCCAAGTTGTAGCCTTTCGCAAAGTCTGC 633
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 377 CAAGTGAACAGTCCCAGGAAGCTTTGTCTGCTCCAAGTTGTAGCCTTTCGCAAAGTCTGC 436
Query 634 CTGTGTATGCTACTTCCCATGATTCAGATGTTCTTAACAGTGGAAGTGAG-GAAGGAATT 692
|||||||||| ||||||||||||||||||| | | | ||| ||| || || ||
Sbjct 437 CTGTGTATGCCACTTCCCATGATTCAGATGG----A---G-G-AAGCGAGAGA-GGCATC 486
Query 693 TGCTCTTCCATTGCAGAGTTTGATAGAAAAACATCATTGGAGCCTCTGGAGTTCACTGAT 752
||||||||||||| ||| ||||||||||| ||||| ||||||||| | | || ||
Sbjct 487 TGCTCTTCCATTGGAGAATTTGATAGAAAGACATCGTTGGAGCCT-T----TCCA-TG-- 538
Query 753 GATTCGTGTAGATTCCGTGGGACTTGTGTTGTTACCTCATCAAGTGCTCATGGATCGACT 812
| | | || ||| |||| | |||||||||||||||||||||||||||
Sbjct 539 G---C----AC-TT--GTG----TTGT-T----ACCTCATCAAGTGCTCATGGATCGACT 579
Query 813 AGTTATGCTGCAGGTAAGGTTAGTTCGAGTCTTACTGGAGCTAGAAGGATAGTTGGTTTT 872
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 580 AGTTATGCTGCAGGTAAGGTTGGTTCGAGTCTTACAGGAGCTAGAAGGATAGTTGGTTTT 639
Query 873 GCGTCAGGCGAAACAAGCTCACTGGACAACAAACAAACGAGTGTCGCTGTTGATCACTCT 932
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GCATCAAGCGAAACTAGCTCACTGGACAACAAACAAACGAGTGTCGCTGTTGATCACTCT 699
Query 933 CTATCATCCACTGTTGGAGTTGCAGGAGTAGATATCGGTGGAGCATTAGTCAGGAAACGA 992
||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 700 CTATCATCCACTGGTGGAGTTACAGGAGTAGATATTGGTGGAGCGTTAGTCAGGAAACGA 759
Query 993 GTACTCTCCCCCTTAAATACTCTTTTCCCTGTCAAATTCAGAGGTGACCTGCATGATATC 1052
||||||||||| || ||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 760 GTACTCTCCCCGTTGAATACTCTTTTCCCTGTAAAATTCAGAGGTGACCTTCTTGATATC 819
Query 1053 AGCTGTGGTAACCACCAACAAATTACTTATTCTGGTCAGTCTAATGGATTCTGCAACTCT 1112
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 820 AGCTGTGGTAACCATCAACAAATTACTTATTCTGGTCAGTCTAATGGATTCTGCAAGTCT 879
Query 1113 GTCGCACAAGATCACA-TAAAGGCTAATACCCCTAGTAGGTTACATC--TCT-CCACTAC 1168
|||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||| |
Sbjct 880 GTCGCACAAGATCACAATAA-GGCTAATACCCCTAGTAGGTTACATCCCTCTACCACTCC 938
Query 1169 TCCTAC-A-A-CCACA---AGTTGCTGGGAGTGGAAGAATGTCTCAAACAGTGGTAGACT 1222
| |||| | | ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 939 TACTACCACAACCACATCTAGTTGCTGGGAGTGGAAGAATGCCTCAAACAGTGGTAGACT 998
Query 1223 CTCGTCTATGGTCTTCACTGATGGTCCATTGCTTGACTCTGTAGATCTCCGCCAACCCGT 1282
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 999 CTCGTCCATGGTCTTCACTGATGGTCCATTGCTTGACTCTGTAGATCTCCGCCGACCCAT 1058
Query 1283 CAAAGGAGGTGAGGTTTGCTTATATTCCCCACTATATGAAACGTCTAGCACACCCAATAA 1342
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1059 CAAAGG---TGAGGTTTGCTTATATTCCCCACTACATGAAACGTCTAGCATACCCAATAA 1115
Query 1343 GCCCTTACCTTGTGATAAGGAAATATCTGTCTCTCCGCCGCTTTGTCTGTCACCACTTGG 1402
|||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1116 GCCCTTACCTTGTGATAAGGAAATATCTGTGTCTCCACCGCTGTGTCTGTCACCACTTGG 1175
Query 1403 TCCGAAGTTTTCTGAGAGAGTAAAAGCTGTAAGAAGTTGCCAAACTGGGAAAATACTGGA 1462
||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||
Sbjct 1176 TCCGAAGTTTTCTGAGAGAATAAAAACTGTAAGAAGTTGCCAAAATGGGAAGATACTGGA 1235
Query 1463 AGATTTAAGGAATATCAGTGAAGAAGCAGAATTAAGAGTTGATCGTAGATTGTTTGATGA 1522
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1236 AGATTTAAGGAATATCAGTGAAGAAGCAGAATTAAGAGTCGATCGTAGATTGTTTGATGA 1295
Query 1523 TGCATATGCCATTAGGAGAGCGTTTTCAATGGAGAGAAGTACTGAATCAGCTCCTGCATC 1582
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGCATATGCCATTAGGAGAGCATTTTCAATGGAGAGAAGTACTGAATCAGCTCCTGCATC 1355
Query 1583 TCCATGTAAAAGGTTCATTAGAAGCTTGAGTGGACGGCCTATTCAGAGGTCATTGGTTGG 1642
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1356 TCCATGTAAGAGGTTCATTAGAAGCTTGAGTGGACGCCCCATTCAGAGGTCATTGGTTGG 1415
Query 1643 TTCTTTTGAGGAGTCACTCTTGACAGGACGATTGTCATGCGGGCCAACAAATCAGAAGAT 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TTCTTTTGAGGAGTCACTCTTGACAGGACGATTGTCATGCGGGCCAACAAATCAGAAGAT 1475
Query 1703 TGACGGCTTTCTTGCCGTTCTTAGTATTGCTGGGGGAAACATCTCTCCAAAATCACAGAA 1762
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1476 TGACGGCTTCCTTGCCGTTCTTAGTATTGCTGGGGGGAACATCTCTCCAAAATCACAGAA 1535
Query 1763 GCTTCCATTCTCAGTAACTAGTGCTGGTGATGATTGCCTCTTGTTATACTACGCCTCCAT 1822
||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||
Sbjct 1536 GCTTCCATTCTCAGTAACTAGTGCTGGTGATGATTCCCTTTTGCTATACTATGCCTCCAT 1595
Query 1823 AGATCTCGCTGGAGGATCTAAATTGAACAAATTCTGGGGCCA-AAAAGTGAAAACAAGTC 1881
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1596 AGATCTCGCCGGAGGATCTAAATTGAACAAATTCTGGGGCCAGAAAA-TGAAAACAAGTC 1654
Query 1882 AAATGAACTCTGATGCCCAGAGTTCGAAGAGCCAACTGCGGATCCCCATGAAGGGTCGGA 1941
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1655 AAATGAACTCTGATGCTCAGAGTTCGAAAAGCCAACTGCGGATCCCCATGAAGGGTCGGA 1714
Query 1942 TTCAACTGGTTCTTAGTAACCCTGAGAAAACACCTCTTCACACCTTCCTCTGTAACTATG 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TTCAACTGGTTCTTAGTAACCCTGAGAAAACACCTCTTCACACCTTCCTCTGTAACTATG 1774
Query 2002 ACTTGACTGATATGCCAGCTGGAACAAAGACGTTCTTGCGCCAAAAGGTTACACTGGGAT 2061
||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct 1775 ACTTGACTGATATGCCAGCCGGTACAAAGACGTTCTTGCGCCAGAAGGTTACTCTGGGAT 1834
Query 2062 CATCTAATCCAACTAGTGAAGCAACGCAAGAGAACACTAGAAAAGCCACAAGCTTGGAAA 2121
|||||||||| ||||||||||||| ||||||||||||||||||| ||| || ||||||||
Sbjct 1835 CATCTAATCCTACTAGTGAAGCAATGCAAGAGAACACTAGAAAATCCAAAAACTTGGAAA 1894
Query 2122 AAGAAAACTCTAAACATGGGGACAAAGAGAGTTGTGAAGGATCTGATTCAGTAGATTCAG 2181
||||||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1895 AAGAAAATTCTAAACAGGGGGACAAAGAAAGTTGTGAAGGATCTGATTTAGTAGATTCAG 1954
Query 2182 TGGAAGGAGATGTG---TT-G--------CATGAAAGTGGAAAAATCTGTTTAAAGC-CG 2228
|||||||||||| | || | |||||||||| ||||| ||||||||| | ||
Sbjct 1955 TGGAAGGAGATGAGAAATTTGATGAGTTACATGAAAGTGAAAAAAGCTGTTTAAA-CACG 2013
Query 2229 TCGAAAGAATGTAACGGTGGTTCTGGTGCTCTACGCTACGCTCTTCATCTGAGATTTCTT 2288
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2014 TCCAAAGAATGTAACGGTGGTTCTGGTGCTCTACGCTATGCTCTTCATCTCAGATTTCTT 2073
Query 2289 TGCCCATTACCTAAGAAAAG-TTCAAAGAAATCTGAAGAAACCGAATCCACGGGGCAAAA 2347
||||||||||| |||||| | ||||||||||||||| ||||||||| | |||||||||||
Sbjct 2074 TGCCCATTACCGAAGAAA-GCTTCAAAGAAATCTGACGAAACCGAAACTACGGGGCAAAA 2132
Query 2348 GAAAAACTTGGATTCAGATGGGAAGAGGAGATTCTATCTGTACAATGACTTAAGAGTCGT 2407
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2133 GAAAAACTTGGATTCAGATGGGAAGAGGAGATTCTATCTGTACAACGACTTAAGAGTCGT 2192
Query 2408 GTTTCCTCAACGTCACACAGATTCCGATGAAGGAAAGTTGAATGTCGAGTACCATTACCC 2467
|||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2193 GTTTCCCCAGCGCCACACAGATTCCGATGAAGGAAAGTTGAACGTGGAGTACCATTACCC 2252
Query 2468 TGAAAACCCAAGATACTTCGACATCACCGAGTGAGAACTTAACT--T-CA--TG---GTT 2519
|||||||||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct 2253 TGAAAACCCAAGATACTTCGACATCACCGAGTGAGAACTTAACTGGTTCAGCTTCATGTT 2312
Query 2520 -ACACAAGCTCAATGATTTTCTTGTTTAAGAAGAAATCAATGGACTTTTTCTGTACATAC 2578
|||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 2313 TACACAAGCTCAATGGTTTTCTTGTTCAAGAAGAAATCAGTGGACTTTTTTTGTACATAC 2372
Query 2579 AAATTTATAGTCACAAATCAGAATGGCTCTGACCCACTTTGTACAGTTTACCATTTCCGG 2638
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2373 AAATTTATAGTTACAAATCACAATGGCTCTGACCCACTTTGTACAGTTTACCATTTCGGG 2432
Query 2639 GTTCTC 2644
||||||
Sbjct 2433 GTTCTC 2438
> Ahg493865 jgi|Araly1|493865|fgenesh2_kg.7__3298__AT5G41110.1
Length=1867
Score = 736 bits (398), Expect = 0.0
Identities = 1197/1564 (77%), Gaps = 129/1564 (8%)
Strand=Plus/Plus
Query 552 ATGGGTCTGCCACAGACTGCTTCAAGTGAACAATCCCAGGAAGCTTTGTCTACTCCAAGT 611
|||||||||||||| |||||||||| ||| ||| |||| |||||||||||| ||||||||
Sbjct 1 ATGGGTCTGCCACACACTGCTTCAAATGAGCAACCCCATGAAGCTTTGTCTGCTCCAAGT 60
Query 612 TGTAGCCTTTCGCAAAGTCTGCCTGTGTATGCTACTTCCCATGATTCAGATGTTCTTAAC 671
|| || ||||| |||||||||||||| |||| ||||| ||||||||||| | |||||
Sbjct 61 TGCAGTCTTTCTCAAAGTCTGCCTGTAAATGCCACTTCTTGTGATTCAGATGGTATTAAC 120
Query 672 AGTGGAAGTGAGGAAGGAA-TTTGCTCTTC-C-ATTGCAGAGTTTGATAGAAAAACATCA 728
|| || | | ||||||| ||| | |||| | |||| ||| | |||||| ||||| ||
Sbjct 121 AGAGG--G-AACGAAGGAAGTTTCCGCTTCTCTATTGGAGAATCTGATAGGCAAACAACA 177
Query 729 TTGGAGCCTCTGGAGTTCACTGATGA-TTCGTGTAGATTCCGTGGGACTTGTGT-TGTTA 786
|||| || ||||||| | ||||| || || ||||||| || || | ||| |||||
Sbjct 178 GTGGAATCTTTGGAGTTTAGAGATGACTT-ATGGAGATTCCATGACAC-TCTGTCTGTTA 235
Query 787 CCTCATCAAGTGCTCATGGATCGACTAGTTATGCTGCA-GG-TAAGGTTAGTTCGAGTCT 844
|||||| | |||||| | | || | |||||| | || |||||| | || |||||
Sbjct 236 CCTCATTACCTGCTCACGAACCG-C--CTTATGC--AATGGATAAGGTAAATTTGAGTCG 290
Query 845 TACTGGAGCTAGAAGGATAGTTGGTTTTGCGTCAG-GCGAAACAAGCTCACTGGA-CAAC 902
|||| || |||||||||||||||||| | || | ||| | ||||||| || ||
Sbjct 291 AACTGAAGTTAGAAGGATAGTTGGTTTCGAATC-GAATGAATCTAGCTCAC-CGAGTAAT 348
Query 903 AAACAAACGAGTGTCGCTGTTGATCACTCTCTAT-CATCCACTGTTGGAGTTGCAGGAGT 961
|| | |||||| || ||||| ||| | || | || || | ||| | | || |
Sbjct 349 GAATACACGAGTATCACTGTTAATCGCACT-GGTGGAT---CTAAT-GAG--GTA-GA-T 399
Query 962 AGATATCGGTGGAGCATTAGTCAGGAAACGAGT-A-CTCTCCCCCTTAAATACTCTTTTC 1019
| |||||||||| | |||||||||||||| || | |||| || | | |||| ||||||
Sbjct 400 A-TTATCGGTGGATCGTTAGTCAGGAAACGGGTAAGCTCT-CCTC-TGAATAAGCTTTTC 456
Query 1020 CCTGTCAAATTCAGAGGTGACCTGCA--TGATATCAGCTGTGGTAACCACCAACAAATT- 1076
|||| ||||| ||||| || || || |||||||||| ||| | ||||| | ||
Sbjct 457 CCTGAGAAATTTAGAGGCGA-CT-CACTTGATATCAGC---CGTAGCAACCAA-GAGTTG 510
Query 1077 ACTTATTCTGGTCAGT-CTAATGGATTCTGCA-ACT-CTGTCGCACAAGATCACATAAAG 1133
||| | ||||| | | |||||||||| | || | | |||| ||||||||||| | ||||
Sbjct 511 GCTTCTGCTGGT-ATTCCTAATGGATT-T-CACATTCCTGTTGCACAAGATCATAAAAAG 567
Query 1134 GCTAATACCCCTAGTAGGTTACATCTCTCCACTACTCCTACAACCACAAGTTGCTGGGAG 1193
|| |||| | || | || |||| ||||| || ||| | | | | | || || ||
Sbjct 568 GCCAATATCTCTGGGAGATTACGTCTCTTTACCACT--T-CTA-C-C---TT-CTCTGAA 618
Query 1194 TGGAAGAATG--TC-TCAAACA-GTGGTAGACTCTCGTCTA-TGGTCTTCACTGATGGTC 1248
||| ||||| || ||| ||| | |||| ||| || |||| | || ||||| |||||||
Sbjct 619 TGGGGGAATGACTCGTCACACACG-GGTAAACTTTCATCTACT-GTTTTCACGGATGGTC 676
Query 1249 CATTGCTTGAC-TCTGTAGATCTCCGCCAACCCGTCAAAGGAGGTGAGGTTTGCTTATAT 1307
||||||||||| | | ||||| | || ||| |||| || || | ||||||||||
Sbjct 677 CATTGCTTGACGCCAAT-GATCT--G-CAGCCC-ACAAAAGATGT-A-CATTGCTTATAT 729
Query 1308 TCCCCACTATATGAAAC--GTCTAGCACACCCAATAAGCCCTTACCTTGTGATAAGGAA- 1364
| ||| || ||||||| || || ||| |||||| | ||| ||| || || ||
Sbjct 730 TTACCAGTACATGAAACATTTCAAG--TACCTGCTAAGCCATCACCATGTCAT-AGAAAC 786
Query 1365 ATATCTGTCTCTCCGCCGCTTTGTCTGTCACCACTTGGTCCGAAG-TTTTCTGAGAGAGT 1423
||||||||||||||||| |||| ||||||||| ||||| || ||| || | |||||| |
Sbjct 787 ATATCTGTCTCTCCGCCACTTTCTCTGTCACCTCTTGGGCC-AAGATTCCCCGAGAGAAT 845
Query 1424 AAAAGCT-GT-AAGAAGTTGCC-AAACTGGGAAAATAC-TGGAAGA---------TTTAA 1470
|||||| | ||| | ||| ||| |||||| || | | ||||| |||||
Sbjct 846 GAAAGCTCTTCAAG--GGGGCCTAAA-TGGGAATAT-CTTCGAAGATGGCGTTTGTTTAA 901
Query 1471 GGAATATC-AGTGAAGAAGCAGAA-TTAAGAGTTGATCGTAGATTGTTTGATGATGCAT- 1527
||||| | |||||||||||||| | | || || || |||||||||||||||| | |
Sbjct 902 AGAATA-CTGGTGAAGAAGCAGAACTCAGGA-CTGGTCATAGATTGTTTGATGATAC-TA 958
Query 1528 ATGCCAT-TAGGAGAGCGTTTTCAATGGAGAGAAG-TACTGAATCAGCTCCTGCATCTCC 1585
||| || | |||||| ||||||||||| || || || |||||||| |||| |||||||
Sbjct 959 ATGGTATCCA-GAGAGCCTTTTCAATGGATAG-AGCTATTGAATCAGTTCCTACATCTCC 1016
Query 1586 ATGTAAAAGGTTCATTAGAAGCTTGAGTGGACGGCCTATTCAGAGGTCATTGGTTGGTTC 1645
||||||||| || | |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1017 ATGTAAAAGATTTAGTAGAAGCTTGAGTGGACGTCCCATTCAAAGGTCATTGGTTGGTTC 1076
Query 1646 TTTTGAGGAGTCACTCTTGACAGGACGATTGTCATGC-GGGCCAA-CAAATCAGAAGATT 1703
||||| || || ||||| ||||| |||| || | | ||| ||| | ||||||||||||
Sbjct 1077 GTTTGAAGAATCCCTCTTTTCAGGAAGATTATCCT-CTGGG-CAAGCTAATCAGAAGATT 1134
Query 1704 GACGGCTTTCTTGCCGTTCTTAGTATTGCTGGGGGAAACATCTCTCCAAAATCACAGAAG 1763
||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1135 GACGGTTTTCTTGCCATTCTTAGTATTGCTGGCGGAAACATCTCTCCAAAATCACAGAAG 1194
Query 1764 CTTCCATTCTCAGTAACTAGTGCTGGTGATGATTGCCTCTTGTTATACTACGCCTCCATA 1823
||||||||||||||||| |||| ||||||||||||| |||| ||||||| |||||||||
Sbjct 1195 CTTCCATTCTCAGTAACAAGTGTTGGTGATGATTGCTTCTTACTATACTATGCCTCCATA 1254
Query 1824 GATCTCGCTGGAGGATCTAAATTG--AA-CAAATTCTGGGGCCAAAAAGTGAAAAC-AAG 1879
|||||| || |||||| | ||| || |||||| ||||| || ||| ||||||| ||
Sbjct 1255 GATCTCTCTAAAGGATC-A--TTGCCAAACAAATTGTGGGGTCAGAAACTGAAAACCAAC 1311
Query 1880 TCAAATGAACTCTGATGCCCAGAGT-TCG--AAGAGCCAACTGCGGATCCCCATGAAGGG 1936
|||| || |||||||| |||| || || | | || ||||| || ||||||||
Sbjct 1312 -CAAAACAAGTCTGATGCTCAGACCATCATTAATAAACGTCTTCGGATTCCTATGAAGGG 1370
Query 1937 TCGGATTCAACTGGTTCTTAGTAACCCTGAGAAA-ACACCTCTTCACACCTTCCTCTGTA 1995
|||||| ||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1371 TCGGATCCAACTGGTTCTGAGTAACCCTGA-AAAGACACCTCTTCACACTTTCCTCTGTA 1429
Query 1996 ACTATGACTTGACTGATATGCCAG-CTGGAACAAAGACGTTCTTGCGCCAAAAGGTTACA 2054
|||||||||| |||||||||||| | || |||||||| ||| ||||||||||||||||
Sbjct 1430 ACTATGACTTAACTGATATGCCACAC-GGTACAAAGACCTTCCTGCGCCAAAAGGTTACT 1488
Query 2055 CTGG 2058
||||
Sbjct 1489 CTGG 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100901059005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5