BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26900.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484472 jgi|Araly1|484472|fgenesh2_kg.5__464__AT3G26900.2 1445 0.0
> Ahg484472 jgi|Araly1|484472|fgenesh2_kg.5__464__AT3G26900.2
Length=1221
Score = 1445 bits (782), Expect = 0.0
Identities = 904/961 (94%), Gaps = 15/961 (2%)
Strand=Plus/Plus
Query 2 TATGATAAAAG-AAATTAATACGTGGCGGATATCTTGGGACTAGAGGAAGGAGGGAGAGA 60
|||| |||||| ||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct 1 TATGGTAAAAGAAAATT-ATACGTGGCGGATATCTTGGGACTAGAGG-AGGA-GG-GAG- 55
Query 61 AGGAGCTTAAGAGAGCATTCGTCGTCGTCAATGGAGATCTTCTCTGCGTCTGCTTCTCTA 120
|||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 56 AGGAGC-TAAGAGACCATTCGTCGTCGTCAATGGAGA---TCTCTGCGTCTGCTTCTCTA 111
Query 121 ACTTTAACTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTAC- 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 ACTTTCTCTGGATTCGTTCCTCGTCTTCTTCCCTTGCTCTCTCCTCAAGCTCGAACTACT 171
Query 180 TCTCTGCAAGCCGTTGCTGTCTTCTTCTTC-T--ACTAGACTCATTTCTTGTCACAGTCG 236
||| | |||| ||||||| ||||||||||| | | |||||||||||||| |||||||||
Sbjct 172 TCT-TCCAAGACGTTGCTCTCTTCTTCTTCTTCCATTAGACTCATTTCTTCTCACAGTCG 230
Query 237 TATAGCTCCGTCTCGGTCTCTCGCAGATCAATCCGCCTCTACTGGGATCAGTGTTGTTGA 296
|||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 231 TATAGCTCCGTCTCAGTCTCTCGCCGATCAATCTGCCTCTACCGGGATCAGTGTTGTTGA 290
Query 297 TTCGGATCCCATTGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAACTGAAAGG 356
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 291 TTCGGATCCCATAGATGTTGTAAAGAGGAAAGCTATGGACATAGCCCCTGAATTGAAAGG 350
Query 357 AGCTTCCATATTTCTGGTTGGAATTAATAACTCTATTAAAACGAACACGGGGAAGCTTTT 416
|||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 351 AGCTTCGATATTTCTGGTTGGGATTAATAACTCTATTAAAACTAAGACGGGGAAGCTTTT 410
Query 417 GGCTGAGGCATTACGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGG 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GGCTGAGGCATTAAGATATTACTACTTTGATAGTGATAATTTGATCACAGAGGCGGCTGG 470
Query 477 TGGAAATGTGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAAGAATCAGA 536
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 471 TGGAAATATGTCTGCTCAAGCTTTGAAGGAAGCTGATGAGAAGGCTTTTCAGGAATCAGA 530
Query 537 GACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GACTGAAGTGCTGAAGCAGCTATCATCTATGGGTCGGCTTGTAGTTTGCGCTGGAGATGG 590
Query 597 TGCGGTCCAAAGCTTGAGAAATCTTGCACTTCTTAGACACGGGATCTCCATATGGATCGA 656
||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 591 TGCGGTCCAGAGCTTGACAAATCTTGCACTTCTAAGACACGGAATCTCCATATGGATCGA 650
Query 657 TGTTCCTCTGGATATCACTGCTAAAGGGGATGATGATTCATTCCACTCAGAACCTTCCCC 716
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 651 TGTTCCTCTGGATATCGCAGCTAAAGGGGATGATGATTCATTCAACTCAGAACCTTCTCC 710
Query 717 TGAGTTGTTTGACACACTAAAAGCGAGTTACGAGAAATCAAGAAAGGGTTACGAAACAGC 776
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 711 TGAGTTGTTTGTCACACTAAAAGCGAGTTACGAAAAATCAAGAAAGGGTTACGAAACAGC 770
Query 777 AGATGTATCCATTTCCCTTGAAAAAATAGCTACAAAGCTAGAATTTGAAGACTTGGAAGC 836
||||| |||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 771 AGATGCATCCATTTCCCTTGAAAAAATAGCCACAAAACTGGAATTTGAAGAGTTGGAAGC 830
Query 837 AGTAACTTCTGAAGACATTGCTTTGGAGATTCTGAAAGAAATAGAGAAGTTGACAAGAGT 896
|||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||
Sbjct 831 AGTAACTTCTGAAGACATTGCTTTGGAGGTCCTGAAAGAAATCGAGAAGTTGACGAGAGT 890
Query 897 GAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCATTCAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 891 GAAGAAAATGATGGAAGAAGCTTCTCGACCTTTCTAGGTCGATTTTACACTCTCACTCAT 950
Query 957 A 957
|
Sbjct 951 A 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5