BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26910.2
Length=2253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484476 jgi|Araly1|484476|fgenesh2_kg.5__468__AT3G26910.2 3469 0.0
> Ahg484476 jgi|Araly1|484476|fgenesh2_kg.5__468__AT3G26910.2
Length=2248
Score = 3469 bits (1878), Expect = 0.0
Identities = 2146/2270 (95%), Gaps = 39/2270 (2%)
Strand=Plus/Plus
Query 1 AAAGAAACtttttttttttGGTCTTCCTTATTCTTTCTTCAATGTCGTTGAACATATCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAAACTTTTTTTTTTTGGTCTTCCTTATTCTTTCTTCAATGTCGTTGAACATATCTG 60
Query 61 ACGATACTTGAATCTCACTCTTTCTTCTCTTCTATTCTCTGTTTTTAGTCACAATTTCAT 120
||||||||||||||||| | ||| ||| ||||||| ||||||| |||||||||
Sbjct 61 ACGATACTTGAATCTCA------C-TCT-TTC--TTCTCTG-ATTTAGTCTCAATTTCAT 109
Query 121 CTATATCTCCTCTCACTTTTGTTTTTGAGAATTTTCGATCCCAAGC-TTTTCTCAGAGAA 179
|| |||||| ||||||||||| || |||||| |||||||||||||| |||||||||||||
Sbjct 110 CT-TATCTCTTCTCACTTTTG-TTCTGAGAAATTTCGATCCCAAGCTTTTTCTCAGAGAA 167
Query 180 TTTTGACTGG-AAATTTCGTAATTAGGGTTTTT--GATTTGAGGCATTATTCTACGATGA 236
|||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 168 TTTTGACTGGAAAATTTCGTAATTAGGGTTTTTGAGATTTGA--CATTATTCTACGATGA 225
Query 237 AAGCTTCGATTGAGAAGTTAAGGAGATTAACATCGCATTCACATAAGGTTGATGTGAAGG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AAGCTTCGATTGAGAAGTTAAGGAGATTAACATCGCATTCACATAAGGTTGATGTGAAGG 285
Query 297 AGAAAGGAGATGTCATGGCTACAACACAAATCGACGAACTCGATCGAGCCGGGAAGGATA 356
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 286 AGAAAGGAGAGGTCATGGCTACAACACAAATTGACGAACTCGATCGAGCCGGGAAGGATA 345
Query 357 TGCAAGATATGAGAGAATGTTACGATAGACTACTCGCTGCAGCTGCTGCCACGGCAAATA 416
|||||||||||||||| || ||||||||||||||| | ||||||||||||||||| ||||
Sbjct 346 TGCAAGATATGAGAGACTGCTACGATAGACTACTCTCCGCAGCTGCTGCCACGGCTAATA 405
Query 417 GCGCATATGAGTTCTCTGAGTCGTTGGGAGAAATGGGTTCTTGTTTGGAGCAAATCGCGC 476
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 406 GCGCTTATGAGTTCTCTGAGTCTTTGGGAGAAATGGGTTCTTGTTTGGAGCAAATCGCGC 465
Query 477 CTCATAACGACGAAGAGAGCAGTAGAATCTTGTTTATGTTGGGTAAAGTACAGAGTGAGC 536
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 466 CTCATAACGACGAAGAAAGCAGTAGAATCTTGTTTATGTTGGGTAAAGTTCAGAGTGAGC 525
Query 537 TTCAAAGACTTCTTGACACATATCGTAGTCATATATTCGAAACTATTACATCCCCGTCCG 596
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 526 TTCAAAGACTTCTTGACACATATCGTAGTCATATATTCAAAACCATTACATCCCCATCAG 585
Query 597 AGGCGCTTCTCAAGGACCTCAGATA-TGTTGAGGATATGAAGCAACAATGCGACGGGAAG 655
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 586 AGGCGCTTCTCAAGGACCTCAGA-ACTGTTGAGGATATGAAGCAACAATGCGACGAGAAG 644
Query 656 AGGAATGTGTATGAGATGTCGCTAGTGAAAGAGAAAGGAAGGCCTAAAAGCAGTAAAGGA 715
|||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 645 AGGAATGTGTATGAGATGTCGCTAGTAAAAGATAAAGGAAGGCTTAAAAGCAGTAAAGGA 704
Query 716 GAGAGACATATTCCTCCTGAGTCTCGACCTGCTTACAGTGAGTTTCATGATGAAGCCACA 775
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 705 GAGAGGCATATTCCTCCCGAGTCTCGACCTGCTTACAGTGAGTTTCATGACGAAGCAACA 764
Query 776 ATGTGCATTTTTCGATTGAAATCGCTTAAAGAAGGACAAGCTCGTAGTCTCCTAATACAA 835
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 765 ATGTGCATTTTTCGATTGAAATCTCTTAAAGAAGGACAAGCTCGTAGTCTCCTTACACAA 824
Query 836 GCAGTCCGTCACCACACTGCTCAGATGCGTTTGTTTCACACTGGACTGAAATCGCTCGAG 895
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 825 GCAGTCCGTCACCACACTGCTCAGATGCGTTTGTTCCACACTGGACTGAAATCTCTCGAG 884
Query 896 GCAGTTGAGCGTCATGTAAAAGTTGCTGTAGAGAAACAACACATTGACTGTGATCTATCT 955
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 885 GCAGTTGAGCGTCATGTAAAAGTTGCTGCAGAGAAACAACACATTGACTGTGATCTATCT 944
Query 956 GTTCATGGGAACGAGATGGAAGCTAGCGAG---GATGATGATGATGATGGCCGATACATG 1012
||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 945 GTTCATGGGAACGAGGTGGAAGCTAGCGAGTATGATGATGATGATGATAGCCGATATATG 1004
Query 1013 AATAGAGAAGGAGAACTCAGTTTTGATTACAGAACAAATGAGCAGAAGGTAGAAGCTTCT 1072
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1005 AACAGAGAAGGAGAACTCAGTTTTGATTACAGAACAAATGACCAGAATGTAGAAGCTGCT 1064
Query 1073 TCTCTCTCTACACCATGGGCCACAAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCT 1132
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TCTCTCTCTACACCATGGGGCTCAAAGATGGATGATACAGACCTCTCGTTTCCTCGCCCT 1124
Query 1133 TCTACAACAAGACCAGCAGCGGTAAATGCTGATCATAGAGAAGAATATCCAGTTTCAACC 1192
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCTACAACACGACCAGCAGCGGTAAATGCTGATCATAGAGAAGAATATCCAGTTTCAACC 1184
Query 1193 CGCGATAAGTATTTGAGCAGCCATTCAGCTCCGTTGTTCCCAGAAAAGAAACCTGATGTA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1185 CGCGATAAGTATTTGAGCAGCCATTCAGCTCCGTTGTTCCCAGAAAAGAAACCTGATTTA 1244
Query 1253 TCAGAGAGGTTGAGACAGGCG---AATCCATCTTTTAATGCCTACGTATTACCAACACCA 1309
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1245 TCAGAGAGGTTGAGACAGGTGGTGAATCCATCTTTTAATGCCTACGTATTACCAACACCA 1304
Query 1310 AATGATTCAAGGTACTCAAAACCGGTTTCCCAAGCATTAAATCCGAGGCCAACAAACCAC 1369
|| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1305 AACGATTCAAGGTACTCGAAACCGGTTTCCCAAGCTTTAAATCCGAGGCCAGCAAACCAC 1364
Query 1370 AGTGCCGGAAACATATGGCATTCATCTCCGTTAGAGCCGATAAAAAGCGGGAAAGATGGG 1429
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 AGTGCTGGAAACATATGGCATTCATCTCCGTTAGAGCCGATAAAAAGCGGGAAAGATGGG 1424
Query 1430 AAAGACGCCGAAAGCAACAGCTTCTACGGCCGCCTCCCTCGGCCTTCTACAACAGACACG 1489
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAAGACGCGGAAAACAACAGCTTCTACGGCCGCCTCCCTCGGCCTTCTACAACAGACACG 1484
Query 1490 CATCATCATCA---GCAGCAAGCAGCAGGAAGACATGCATTTTCTGGACCTCTCAGACCG 1546
||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1485 CATCATCATCATCAGCAGCAAGCAGCAGGAAGACATGCATTTTCCGGACCTCTCAAACCG 1544
Query 1547 TCCTCAACAAAACCCATCACCATGGCTGACAGTTATTCAGGCGCTTTTTGTCCTCTGCCG 1606
|||||||||||||| |||||| ||| |||||||| |||||||| |||||||||||||||
Sbjct 1545 TCCTCAACAAAACCTGTCACCACGGCGGACAGTTACTCAGGCGCGTTTTGTCCTCTGCCG 1604
Query 1607 ACTCCTCCAGTACTCCAATCTCA-CCCTCATTCATCATCTTCTCCAAGAGTCTCCCCTAC 1665
||||||||| |||||| |||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1605 ACTCCTCCAATACTCC---CTCATCCC-CATTCATCAGCTTCTCCAAGAGTCTCCCCTAC 1660
Query 1666 CGCTTCACCTCCTCCTGCTTCTTCCCCAAGGCTCAACGAGCTTCACGAGCTTCCAAGACC 1725
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1661 AGCTTCACCTCCTCCTGCTTCTTCCCCGAGACTCAACGAGCTTCACGAGCTTCCAAGACC 1720
Query 1726 CCCAGGCCACTTTGCACCACCTCCAAGACGAGCCAAGTCCCCTGGTCTGGTTGGTCACTC 1785
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1721 CCCAGGCCACTTTGCACCACCGCCAAGACGAGCCAAGTCCCCTGGTCTGGTTGGTCACTC 1780
Query 1786 AGCGCCTCTAACCGCATGGAACCAAGAAAGAAGCACTGTCACTGTTGCTGTTCCGTCCGC 1845
|||||||||||| | ||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1781 AGCGCCTCTAACTGGATGGAACCAAGAAAGAAACACTGTCACTGTTGCTCCTCCGTCTGC 1840
Query 1846 CACCAACATTGTGGCCTCGCCGCTTCCGGTTCCTCCGTTGGTTGTCCCTAGAAGCTACTC 1905
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1841 CACCAACATTGTGGCTTCACCACTTCCGGTTCCTCCGTTGGTTGTCCCTAGAAGCTACTC 1900
Query 1906 TATACCTTCAAGAAACCAGAGAGTTGTTTCTCAACGGCTGGTCGAAAGGAGAGATGATAT 1965
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1901 TATACCTTCAAGAAACCAGAGAGCTGTTTCTCAACGGCCGGTCGAAAGGAGAGATGATAT 1960
Query 1966 AGTAGCATCCCCACCGTTAACACCAATGAGCCTGTCTAGGCCACTTCCTCAAGCCACAGG 2025
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1961 AGTAGCATCCCCACCGTTAACACCAATGAGCCTGTCTCGGCCTCTTCCTCAAGCCACAGG 2020
Query 2026 AGTTGCTCAGACCAGTCAAATCAGAGGAGTAGGAAAGCTGATCGAACGATGAGGCTTCCG 2085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2021 AGTTGCTCAGACCAGTCAAATCAGAGGAGTAGGAAAGCTGATCGAACGATGAGGCTGCCG 2080
Query 2086 CGTCTGCGTCACGTTTGACCAAAACGCT-GATTGTACAAATTCAGAGATCTTCACAAGTG 2144
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2081 CGTCTGCGTCGCGTTTGACCAAAACGCTTG-TTGTACAAATTCAGAGATCTTCACAAGTG 2139
Query 2145 AATATAGAAGTCAGTATATGTATTATTCTTTAGTTGGTTAATCTCCtttttt-ttttCCC 2203
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2140 AATATAGAAGTCGGTATATGTATTATTCTTTAGTTGGTTAATCTC-TTTTTTCTTTTCCC 2198
Query 2204 ATTGTAAATCTGAAGCCTCTGCTCTTTATTCCCTTTTCATTTTCAATCCC 2253
||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2199 ATTGTAAATCTGAAGTCTCTGCTCTTTATTCCATTTTCATTTTCAATCCC 2248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84826975615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5