BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26932.1
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484479 jgi|Araly1|484479|fgenesh2_kg.5__471__AT3G26932.1 2338 0.0
Ahg493870 jgi|Araly1|493870|fgenesh2_kg.7__3303__AT5G41070.1 645 0.0
> Ahg484479 jgi|Araly1|484479|fgenesh2_kg.5__471__AT3G26932.1
Length=1476
Score = 2338 bits (1266), Expect = 0.0
Identities = 1418/1490 (95%), Gaps = 16/1490 (1%)
Strand=Plus/Plus
Query 16 AAATTCACTTTCAACATCAGAGAGCCCTAAGCttttttttttACTCATTACACCAAAAAC 75
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1 AAATTCACTTTCAACATCAGAGAGCCCTAA--TCTTTTTGTTACTCATTACACCAAAAAC 58
Query 76 CTTCAACGGCAA-TTTAACCAAGTGAGTTTCTTGTAGTTTTGCTACTTCTCTCTCTTTCT 134
|||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 59 CTTCAATGGCAACTTTAACAAAGTGAGTTTCTTGTATTTTTGCTACTTCTCTCTCTTTCT 118
Query 135 TGAACACTGTAGAGTCTTAAGGTCCATATCACATGATGGAGACAAGCTCCTCTGTTTATA 194
||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 119 TGAACACTGTAGAGTCTTAAGGTCC--ATCACATGATAGAGACAAGCTCTTCTGTTTATT 176
Query 195 TATTAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TATAAAGAGACACCAAATCTTAAATACCAATTTAAGCAGATGTATAAGAATCAGTTGCAA 236
Query 255 GAGCTTGCACAGAGGAGTTGTTTCAGTCTCCCATCATATACATGCACAAGAGAAGGACCA 314
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 GAGCTTGCACAGAGAAGTTGTTTCAATCTCCCATCATATACATGCACAAGAGAAGGACCA 296
Query 315 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCAATGGTGAGATATTTGAAAGCCCA 374
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 297 GATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTTAATGGTGAAATATTTGAAAGCCCA 356
Query 375 ACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 434
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACTTATTGTTCTACTCTCAGACAAGCTGAGCATTCAGCTGCTGAAGTTGCTCTTAGTGCT 416
Query 435 CTCTCTTCCAAAGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTCTCTTCCAAGGGTCCTTCAAAGTCTCTAACTGCTAGAGTTCTAGATGAGACTGGGATC 476
Query 495 TACAAGAATCTGCTTCAAGAGACAGCACACAGAGCTGGTCTTGATCTACCGGTTTACACA 554
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 TATAAGAATCTGCTTCAAGAGACAGCACATAGAGCTGGTCTTGATCTACCGGTTTACACA 536
Query 555 AGTGTGAGATCAGGACCTGGTCACATCCCAACATTCTCTTGTACTGTGGAGCTTGCTGGA 614
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 537 AGTGTGAGATCAGGACCTGGTCACATCCCAACGTTCTCTTGCACTGTGGAGCTTGCTGGA 596
Query 615 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAACAAGCTGAGAAGAATGCAGCCATT 674
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 ATGAGTTTTAATGGAGAATCAGCAAAGACTAAGAAGCAAGCTGAGAAGAATGCAGCCATT 656
Query 675 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGATTGGACCCATTGAGAGGTGAAGAGAAG 734
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 657 GCAGCTTGGTTCTCCTTGAGAAAAATGCCAAGCTTGGACCCATTAAGAGGTGAAGAGAAG 716
Query 735 GAACAAGAGATAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 794
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAACAAGAGGTAGTTGCAAGAGTCCTCTCAAGATTTAGACCCAAAGAAGTGAAAAGAAGA 776
Query 795 GAACCAAACCAGTCAAGAAGAAGAACAGTCATCAGAACAATTCGCCAAaacacaacaaca 854
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 GAACCAAACCAGTC---AAGAAGAACAGTCATCAAAACAATTCGCCAAAACACAACAACA 833
Query 855 acaacaacaacCACAGGAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 914
||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACAAC--C-A-CAC--GAGACTTGTTGTGTGAGAAACTCAGATCCATCAATCTATATACC 887
Query 915 AATGAAGCTTCATCATCATCACCACCACCACAGAGATTCTGGCCTTCAAGAACAAATCTC 974
|| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 888 AACGAAGCTTCATCATCATCTCCACCACCACAGAGATTCTTGCCTTCAAGAACAAATCTC 947
Query 975 ACACAAGAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1034
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CCACAACAACAATCCAAAGTCAAATCATTGCTAGAGAAATGTCAAGAATATGCAGAGAAG 1007
Query 1035 AAACAGAGCCTAGATGATCCTAAGCCAGAGATGAGAATCAAAACATCATCACCATCACCA 1094
||||||||||||||||||||||| |||||| | | ||||||||||||||| |||||| ||
Sbjct 1008 AAACAGAGCCTAGATGATCCTAAACCAGAGCTCATAATCAAAACATCATCTCCATCATCA 1067
Query 1095 TTATCATCATCAGTGGAGAGAAACTGTTATAGTAAGCTCTTACCCTTTCCAAGTTTTGTG 1154
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
Sbjct 1068 TCATCATCATCAGTGGAGAGAAACTGTTATAGTAAGCTATTACCCTTTTCAAGTTTTGGG 1127
Query 1155 TTAAACCATCAGAAACTAGCTCCAGCAGTTCACATCAGATCAGTGATCCCAGTTTGTTCA 1214
|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1128 TTAAACAATCAGAAACTAGCTCCAGCTGTTCACATAAGATCAGTGATCCCAGTTTGTTCA 1187
Query 1215 GCTCCTCCACCAAAACCTAACCCTAACCCTAATTCATCACCGTTCATCACAAGGGAGCTG 1274
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 1188 GCTCCTCCACCAAAACCTAACCCTAACCCTAACCCATCACCGTCCACCACAAGGGAGCTG 1247
Query 1275 GGAAATGGAAGCCAAGAGAAGAAGTCATTACCAAATTAGGATTAGAAACAAAATCTGGAT 1334
||||||||| ||||||||||||||||| || | |||||| ||||||||||||||||||||
Sbjct 1248 GGAAATGGAGGCCAAGAGAAGAAGTCACTATCGAATTAGAATTAGAAACAAAATCTGGAT 1307
Query 1335 CAAACCCATGATTAAAGGTTGTGTCTTTAGATAAACCCATGTTAAGGATTTGATAATAGA 1394
||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||
Sbjct 1308 CAAACCCATGATTAAAGGTCGTGTCTTTAGATAAACCCATGTTAAGGATATAATTATAGA 1367
Query 1395 GAGATTAGAGAAATGGGTAAAATCAAATCAGGTCATGGGTTTCTGTATGTTCGTCGTGTA 1454
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1368 GAGATTAGAGAAATGGGTAAAATCAAATCAG-TCATGGGTTTCTGTATGTTCGTCGTGTA 1426
Query 1455 AATTTGACTTTTTT-GAATTTTACGACCTGACATGAAATCAATGTTTCTG 1503
|||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1427 AATTTGACTTTTTTTGAATTTTACGATCTGACATGAAATCAATGTTTCTG 1476
> Ahg493870 jgi|Araly1|493870|fgenesh2_kg.7__3303__AT5G41070.1
Length=1438
Score = 645 bits (349), Expect = 0.0
Identities = 526/607 (87%), Gaps = 29/607 (5%)
Strand=Plus/Plus
Query 234 ATGTATAAGAATCAG-TTGCAAGAGCTTGCACAGAGGAGTTGTTTC-AGTCTCCCATCAT 291
||||||||||||||| || ||||||||||||||||| || |||||| | | | |||||||
Sbjct 150 ATGTATAAGAATCAGCTT-CAAGAGCTTGCACAGAGAAGCTGTTTCAACT-TACCATCAT 207
Query 292 ATACATGCACAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTAGTGTAAACTTCA 351
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 208 ATACTTGCATAAGAGAAGGACCAGATCATGCTCCAAGATTCAAAGCTTCTGTTAACTTCA 267
Query 352 ATGGTGAGATATTTGAAAG-CCCAACTTACTGTTCTACTCTCAGACAAGCTGAGCATTCA 410
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 268 ATGGTGAGATATTTGAAAGTCCC-ACTTACTGTTCTACTCTCAGACAAGCTGAGCATGCA 326
Query 411 GCTGCTGAAGTTGCTCTTAGTGCT-CTCTCTTCCAAAGGT-CCTTCAAAGT-CTCTAACT 467
|||||||||||| |||||| || | || || || | | || |||||||| | || | |||
Sbjct 327 GCTGCTGAAGTTTCTCTTAATG-TCCTTTCCTCTAGA-GTCCCTTCAAAATCCT-TGACT 383
Query 468 GCT-AGAGTTCTAGATGAGACTGGGATCTACAAGAATCTGCTTCAAGAGACAGCACACAG 526
||| ||| |||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 384 GCTAAGA-TTCTTGATGAGACAGGGATTTACAAGAACCTGCTTCAAGAGACAGCACACAG 442
Query 527 AGCTGGTCTTGATCTACCGGTTTACACAAGTGTGAGATCAGGACCTGGTCACATCCCAAC 586
|||||||||||||||||| | ||||||||||||||||||||| || ||||| |||||
Sbjct 443 AGCTGGTCTTGATCTACCAATGTACACAAGTGTGAGATCAGGATCTTGTCACTTCCCAGG 502
Query 587 ATTCTCTTGTACTGTGGAGCTTGCTGGAATGAGTTTTA-ATGGAGAATCAGCAAAGACTA 645
||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||| |
Sbjct 503 TTTCTCTTGTACTGTGGAACTTGCTGGGATGAGTTTTACA-GGAGAATCAGCAAAGACAA 561
Query 646 AGAAACAAGCTGAGAAGAATGCAGCCATTGCAGCTTGGTTCTCCTTGA-GAAAAATGCCA 704
|||||||||||||||| || ||||||||||||||||||| ||| |||| || || || ||
Sbjct 562 AGAAACAAGCTGAGAAAAACGCAGCCATTGCAGCTTGGTCCTCTTTGAAGAGAA-TGTCA 620
Query 705 AGATTGGACCCATTGAGAGGTGAAGAGAAGGAACAAGA-GATAGTTGCAAGAGTCCTCTC 763
|| ||||| | | ||| |||||||||||||||||| | ||| |||||||| |||||
Sbjct 621 AGCTTGGATTC-TCAAGA--TGAAGAGAAGGAACAAGAAGC-AGTAGCAAGAGTACTCTC 676
Query 764 AAGATTTAGACCCAAAGAAGTGAA-AAGAAGAGA-AC--CAAACCAGTCAAGAAGAAGAA 819
|||||||| |||||||||||| || ||||||||| || ||||||| | ||||||||||
Sbjct 677 AAGATTTAAACCCAAAGAAGT-AAGAAGAAGAGAGACAACAAACCAATGGAGAAGAAGAA 735
Query 820 CA-GTCA 825
|| ||||
Sbjct 736 CAAGTCA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56259291865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5