BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26934.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484478 jgi|Araly1|484478|fgenesh2_kg.5__470__AT3G26934.1 789 0.0
> Ahg484478 jgi|Araly1|484478|fgenesh2_kg.5__470__AT3G26934.1
Length=602
Score = 789 bits (427), Expect = 0.0
Identities = 554/613 (90%), Gaps = 17/613 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGAT---GAAGGACGACAAGAAGGATCTCGG 57
||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | ||
Sbjct 1 ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGATGAAGAAGGACAAGAAGAAGGATATGGG 60
Query 58 CTAGGATCTATCGGTAAAGATAGCGAAACTGCTGATAGTTTCATATCCGATAAAGAGATT 117
| ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||
Sbjct 61 CGAGGATCTATCGGTAAAGATAGTGAAACTGCCGATAGTTTCATATCCAATAAAGAGCTT 120
Query 118 CTTGAGATATCTAC-CGATAGTAAAAG-TTCCAAAACCAATGGTGAAAATACAACGAGTA 175
|||||||||||||| | ||||| |||| ||||||||| | ||| | ||| | || | |
Sbjct 121 CTTGAGATATCTACAC-ATAGT-AAAGATTCCAAAACTAGTGGCG-AAA-A-GAC--G-A 172
Query 176 GTAAAGAGGAGGAAAATGAATGGAAAGATGATGGACAAGAGAAAGGAGACGAGCTAAAAC 235
|||||||||||||||||||||||||||| |||| | || |||||||||| |||||||||
Sbjct 173 GTAAAGAGGAGGAAAATGAATGGAAAGAAGATGAAGAACAGAAAGGAGATGAGCTAAAA- 231
Query 236 A-TTCACCTGAATCTCCGAGTTTTCGAATTTATTGTGTTTTCCCTAGAAATCCTAATGAT 294
| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 232 ATTTCACCTGAATCTCCGAGTTTTCGAATTTATTGCGTTTTCCCTAGAGATCCTAATGAT 291
Query 295 GACATCGTTGATGATTTGCAACGGAACAAGAACATATCAGACGAAAACAAGGAGCAGAAA 354
||| ||||||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct 292 GACCTCGTTGATGATTTGCAACGGAGCAAGAACATATTGGAAGAAAACAAGGAGCAAAAA 351
Query 355 GTAAAGAGGCAAGAAGCAGTAGGATTGAAAATAAGAAGAAGATTTAACAATGTCAAGAAG 414
| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 352 GGAAAGAGACAAGAAGCAGTAGGAATGAAAATAAGAAGAAGATTTAACAATGTCAAGAAG 411
Query 415 CTTCTAAGCCCTCCGACTGTACCTTCCTCCACAGCTAACCGCATTTGATTTTATTGGTTT 474
|||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 412 CTTCTAAGCCCTCCAACTGTACCTTCCTCCACAGCTAATCGCGGTTGATTTAATTGGTTT 471
Query 475 TTAAATTCTTCATATTAAACTAATTGAGGTTTAGAGTGAAACTGTGGGGAAACTCATATG 534
||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||
Sbjct 472 TTAAATTCTTCATATTAAAGTAATTGAGGTTTAGAGTGAAACTTTGGGGAAATTCATATG 531
Query 535 ATGTGTTAGTGGCAAGAAGCTTTTTGACTACTTCTCTATTTTTTACCATTCTTAGACTCC 594
||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||| ||
Sbjct 532 ATGTGTTAGTGGCCAGAAGCATTT-GACTACTTCTCTATTTTT-ACCATTCTTAGATTCT 589
Query 595 TACTCCTCCAAAT 607
||||| |||||||
Sbjct 590 TACTCATCCAAAT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5