BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G26934.1 Length=621 Score E Sequences producing significant alignments: (Bits) Value Ahg484478 jgi|Araly1|484478|fgenesh2_kg.5__470__AT3G26934.1 789 0.0 > Ahg484478 jgi|Araly1|484478|fgenesh2_kg.5__470__AT3G26934.1 Length=602 Score = 789 bits (427), Expect = 0.0 Identities = 554/613 (90%), Gaps = 17/613 (3%) Strand=Plus/Plus Query 1 ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGAT---GAAGGACGACAAGAAGGATCTCGG 57 ||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | || Sbjct 1 ATGGGTTGTGGTGTTTCAAGGCCGGAGACAGATGAAGAAGGACAAGAAGAAGGATATGGG 60 Query 58 CTAGGATCTATCGGTAAAGATAGCGAAACTGCTGATAGTTTCATATCCGATAAAGAGATT 117 | ||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| || Sbjct 61 CGAGGATCTATCGGTAAAGATAGTGAAACTGCCGATAGTTTCATATCCAATAAAGAGCTT 120 Query 118 CTTGAGATATCTAC-CGATAGTAAAAG-TTCCAAAACCAATGGTGAAAATACAACGAGTA 175 |||||||||||||| | ||||| |||| ||||||||| | ||| | ||| | || | | Sbjct 121 CTTGAGATATCTACAC-ATAGT-AAAGATTCCAAAACTAGTGGCG-AAA-A-GAC--G-A 172 Query 176 GTAAAGAGGAGGAAAATGAATGGAAAGATGATGGACAAGAGAAAGGAGACGAGCTAAAAC 235 |||||||||||||||||||||||||||| |||| | || |||||||||| ||||||||| Sbjct 173 GTAAAGAGGAGGAAAATGAATGGAAAGAAGATGAAGAACAGAAAGGAGATGAGCTAAAA- 231 Query 236 A-TTCACCTGAATCTCCGAGTTTTCGAATTTATTGTGTTTTCCCTAGAAATCCTAATGAT 294 | ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 232 ATTTCACCTGAATCTCCGAGTTTTCGAATTTATTGCGTTTTCCCTAGAGATCCTAATGAT 291 Query 295 GACATCGTTGATGATTTGCAACGGAACAAGAACATATCAGACGAAAACAAGGAGCAGAAA 354 ||| ||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| Sbjct 292 GACCTCGTTGATGATTTGCAACGGAGCAAGAACATATTGGAAGAAAACAAGGAGCAAAAA 351 Query 355 GTAAAGAGGCAAGAAGCAGTAGGATTGAAAATAAGAAGAAGATTTAACAATGTCAAGAAG 414 | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 352 GGAAAGAGACAAGAAGCAGTAGGAATGAAAATAAGAAGAAGATTTAACAATGTCAAGAAG 411 Query 415 CTTCTAAGCCCTCCGACTGTACCTTCCTCCACAGCTAACCGCATTTGATTTTATTGGTTT 474 |||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||| Sbjct 412 CTTCTAAGCCCTCCAACTGTACCTTCCTCCACAGCTAATCGCGGTTGATTTAATTGGTTT 471 Query 475 TTAAATTCTTCATATTAAACTAATTGAGGTTTAGAGTGAAACTGTGGGGAAACTCATATG 534 ||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| Sbjct 472 TTAAATTCTTCATATTAAAGTAATTGAGGTTTAGAGTGAAACTTTGGGGAAATTCATATG 531 Query 535 ATGTGTTAGTGGCAAGAAGCTTTTTGACTACTTCTCTATTTTTTACCATTCTTAGACTCC 594 ||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||| || Sbjct 532 ATGTGTTAGTGGCCAGAAGCATTT-GACTACTTCTCTATTTTT-ACCATTCTTAGATTCT 589 Query 595 TACTCCTCCAAAT 607 ||||| ||||||| Sbjct 590 TACTCATCCAAAT 602 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22721258532 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5