BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26940.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484482 jgi|Araly1|484482|fgenesh2_kg.5__474__AT3G26940.1 1917 0.0
> Ahg484482 jgi|Araly1|484482|fgenesh2_kg.5__474__AT3G26940.1
Length=1688
Score = 1917 bits (1038), Expect = 0.0
Identities = 1517/1733 (88%), Gaps = 93/1733 (5%)
Strand=Plus/Plus
Query 25 ATTTTAATCTAAATCTCCTTCCTTATCACCTCAC-AAATTTCTCGTGtttttttGTAATC 83
|||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 1 ATTTTAATCTAAATCTCCTTCCTTATCACCTCACAAAATTTCTC--GTATTTTTGTAATC 58
Query 84 AATTTTTGATGGAAAATTATTCCCAAAACTCGAATCTCTGTTGATCGTGTGTTTCTTGGG 143
| || || || | ||||| ||||||||||||||||||||||||
Sbjct 59 ------T-AT------TT-TT-----GA-TCGAA--TCTGTTGATCGTGTGTTTCTTGGG 96
Query 144 G-TTCGTCTGATTCCTTCAAAGTTTTCATC-TTTTTGATAACAAAACCGTTAGTTCTTTG 201
| || | |||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 97 GATTTTTTTGATTCCTTCAAAGTTTTCATCTTTTTTTATAACAAAACCGTTAATTCTTTG 156
Query 202 TCCTCGTGTGTGATCATCTCTTGAGCCCTATTGATAAACCATAT--AGAGAGTGTATGTG 259
|| ||||||||| ||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 157 TCATCGTGTGTG---ATCTCTTGAGCCCTATTGATAAACCATATAGAGAGAGAGTGTGTG 213
Query 260 TGTGTATATCTTTGTTTATTGAGTGACACCAACAACAAAA-AGATTATTTTCCTTGAGAT 318
||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 214 TGTGTGTATCTTTGTTTATTGAGTGACACCAACAA-AAAAGAGATTATTTTCCTT--GA- 269
Query 319 TGATTAAAAGAAAACATGG-TTAGTTGCTTGTGTTTTCGTCCCAGTCGGAAAACGAAGCT 377
|||| | | ||||||| || |||||||||||||| ||||| ||||||||| ||||||
Sbjct 270 -GATT---A-ATAACATGGCTT-GTTGCTTGTGTTTTGGTCCCGGTCGGAAAATGAAGCT 323
Query 378 CAAAGACAAATCTCATAAGAGATCCATACGTAACCA-G------A--CATCCTCCTCTTC 428
| ||||||| ||| || ||| ||||||||||||||| | | |||||||||||||
Sbjct 324 CCAAGACAATTCTGATCAGATATCCATACGTAACCAGGCTAACCAGCCATCCTCCTCTTC 383
Query 429 TGCCCAACCAGCTGGAACAGCAAAAG-AAGTAGATTCGTCAAGTTCACAAACCGTAGTGC 487
|||||||||||||| ||||| || || || |||||||||||||||||| |||||||
Sbjct 384 TGCCCAACCAGCTGCAACAG---TAGCAA-TACCTTCGTCAAGTTCACAAACAGTAGTGC 439
Query 488 AAGATTCTTCTAGATACAGATGTCAGATTTTCTCATACAGAGAACTCGCCATCGCGACTA 547
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 440 AAGATTCTGCTAGATACAGATGTCAGATTTTCTCATACCGAGAACTCGCCATTGCGACTA 499
Query 548 ACAGCTTCA-GGAATGAATCTTTGATCGGAAGAGGTGGATTTGGAACTGTGTATAAAGGA 606
||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 500 ACAGCTTCAGGGAA-GAATCTTTGATCGGAAGAGGTGGATTCGGAGCTGTGTATAAAGGA 558
Query 607 AGGCTAAGCACTGGACAGAACATAGCTGTTAAAATGCTTGATCAGTCTGGTATTCAAGGA 666
||||||| || |||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 559 AGGCTAAACAATGGAAAGAACATAGCTGTTAAAGTGCTTGATCAGTCTGGTGTTCAAGGA 618
Query 667 GACAAAGAGTTTCTTGTGGAAGTCCTAATGCTCTCGCTCTTGCACCACCGAAACCTAGTG 726
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 619 GACAAAGAGTTTCTTGTGGAAGTCCTAATGCTCTCTCTCTTGCACCACCAAAACCTTGTG 678
Query 727 CATTTGTTCGGTTATTGTGCTGAAGGCGATCAAAGACTCGTTGTCTATGAATACATGCCT 786
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 679 CATTTGTTCGGTTATTGCGCTGAAGGCGATCAAAGACTCCTTGTCTATGAATACATGCCT 738
Query 787 CTTGGATCTGTAGAAGATCATCTCTACGATCTTAGCGAGGGTCAAGAGGCTTTAGATTGG 846
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 739 CTTGGATCTGTAGAAGATCATCTTTACGATCTTAGTGATGGTCAAGAGGCTTTAGATTGG 798
Query 847 AAGACAAGGATGAAGATAGCTCTAGGAGCGGCTAAAGGGTTAGCGTTTCTTCACAACGAA 906
|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 799 AACACAAGGATGCAGATAGCCCTAGGAGCGGCTAAAGGGTTAGCGTTTCTTCACAACGAA 858
Query 907 GC-ACAACCTCCTGTGATATACAGAGATTTGAAAACTTCAAACATATTGTTGGATCATGA 965
|| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GCAAC-ACCTGCGGTGATATACAGAGATTTGAAAACTTCAAACATATTGTTGGATCATGA 917
Query 966 CTATAAACCTAAGCTCTCAGATTTTGGACTTGCAAAGTTTGGTCCAAGTGATGATATGTC 1025
|||||||| |||||||| |||||||||||||| ||||||||||| |||| |||||||||
Sbjct 918 ATATAAACCGAAGCTCTCTGATTTTGGACTTGCTAAGTTTGGTCCTAGTGGTGATATGTC 977
Query 1026 TCATGTCTCTACTAGAGTTATGGGAACTCATGGGTATTGTGCACCAGAGTACGCGAACAC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TCATGTCTCTACTAGAGTTATGGGAACTCATGGGTATTGTGCACCAGAGTACGCGAACAC 1037
Query 1086 CGGGAAGTTGACGCTGAAATCTGATATTTATAGCTTTGGAGTTGTGCTGCTGGAGCTTAT 1145
|||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1038 CGGGAAATTGACGCTGAAATCTGATATTTATAGCCTTGGAGTTGTGATGTTGGAGCTTAT 1097
Query 1146 CAGTGGACGCAAAGCTCTTATGCCCTCATCCGAATGCGTTGGTAATCAAAGTCGCTATCT 1205
|| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1098 CACTGGACGCAAAGCTCTTTTGCCCTCATCCGAATGCGTTGGTACTCAAAGTCGCTATCT 1157
Query 1206 TGTGCATTGGGCACGACCGTTGTTCTTGAATGGCAGAA-TAAGGCAGATTGTAGATCCAA 1264
||||||||||||||||| |||| ||| |||||| || ||| |||||||||||||||||
Sbjct 1158 TGTGCATTGGGCACGACAATTGTGGTTGGATGGCA-AAGTAATGCAGATTGTAGATCCAA 1216
Query 1265 GGTTAGCAAGAAAAGGCGGTTTTTCGAATATAC-TTCTTTATAGAGGTATTGAAGTGGCC 1323
|||| || ||||||| |||| |||| ||| | || ||| |||| |||| ||||||||
Sbjct 1217 TGTTATTAACAAAAGGCCGTTTATCGAGTAT-CGTTGTTTTTAGAAGTATCGAAGTGGCA 1275
Query 1324 TTTCTGTGCCTAGCAGAAGAAGCAAACGCTAGACCATCGATCAGCCAAGTCGTGGAGTGT 1383
| ||| ||| |||||||||||||||||||||| ||||||| | |||||||| | |
Sbjct 1276 ATGAAGTGTCTAATGGAAGAAGCAAACGCTAGACCATTGATCAGCGAGGTCGTGGATTCT 1335
Query 1384 CTTAAG-TATATCATTGATCACACAATTAGGAAGGAAAGGAGAACTAGGCGTAGACTACT 1442
|| ||| |||||| ||||||||||||| ||||| |||||||| | |||| ||||| |
Sbjct 1336 CT-AAGATATATCGTTGATCACACAATGAGGAAAGAAAGGAG--C-AGGCTTAGACGAG- 1390
Query 1443 AGGAGGAAATAAGGATGGGGCGGGGACATCGAGGTCACCGGATGAGAC-A-ATG-ATGAG 1499
| |||||||| ||||||||||||||||||||| |||||||||||||| | | | |||
Sbjct 1391 A--AGGAAATATGGATGGGGCGGGGACATCGAGCTCACCGGATGAGACGAGAAGGATGTT 1448
Query 1500 GATG-TTAGAAGAAGAAGAAGAATACGTAACTAGTGAAGAAGCTATTGAGAGAAGGAGGG 1558
| | ||||| ||||||| |||| | || || | ||||||||||||||||||||||
Sbjct 1449 TACGGTTAGA-GAAGAAGGAGAA-A-GTC-CT-G--AAGAAGCTATTGAGAGAAGGAGAC 1501
Query 1559 TAATCGTGGATGATGCTCGTACTTGGGCCGGTATGAATAGGA-GAG-GGG-CTACGCCAC 1615
|| ||||||||||||||| |||||||||||| ||||| || ||| ||| |||||||||
Sbjct 1502 TAGTCGTGGATGATGCTCTTACTTGGGCCGGCGTGAATCGGCCGAGAGGGACTACGCCAC 1561
Query 1616 CAACTCCGACTCCATGAAAGTGAAGTAAA-TTTTT-ATT-AACTTGTTTTTCAAGTTATA 1672
|||| |||| ||||||||||||||| ||| ||||| ||| |||| |||||||||||||||
Sbjct 1562 CAACGCCGAGTCCATGAAAGTGAAG-AAACTTTTTTATTTAACT-GTTTTTCAAGTTATA 1619
Query 1673 TTTGGTTAAGTTTGTTTGGTGAGACTATTGTTAGAAACCAAATTTTGTTAAAA 1725
||||||| ||||||||||||| ||||||||||||||| || |||| ||||||
Sbjct 1620 TTTGGTTCAGTTTGTTTGGTGTGACTATTGTTAGAAAATAACTTTTATTAAAA 1672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5