BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26950.1
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936415 jgi|Araly1|936415|scaffold_500606.1 2750 0.0
> Ahg936415 jgi|Araly1|936415|scaffold_500606.1
Length=1687
Score = 2750 bits (1489), Expect = 0.0
Identities = 1618/1682 (96%), Gaps = 2/1682 (0%)
Strand=Plus/Plus
Query 51 AAGAAACGATGAGGAAGAGATGAAACGCGGTGGAACAAGACGGAAGCGGTTGTTCGGGAA 110
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 AAGAAACGATGAAGAAGAGATGAAACGCGGTGGAACAAGACGGAAGCGATTGTTCGGGAA 61
Query 111 GACGATTCTCTTATCATCTGTGGTTTTCTTCATCGGTTTTGGTTTGTTGTTGCTCACGCT 170
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 62 GACGATTCTCTTATCATCCGTAGTTTTCTTCATCGGTTTTGGTTTGTTGTTGCTCACCCT 121
Query 171 CCGTTCCGTAGATCCTAATTCGTCTTTCATCGACGACGACGATGACGAGTCCGAATCCGA 230
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 122 CCGTTCCGTGGATCCTAATTCGTCTTTCATCGATGACGACGATGACGAGTCCGAATCCGA 181
Query 231 GGAGGCTTCGAGATGGAGCAACTCTTCTTCGATTGGAGAGGCTATGGTCGATGGAGCTAA 290
||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 182 GGACACTGCGAGATGGAGCAATTCTTCTTCGATTGGAGAGGCTATGGTCGATGGAGGTAG 241
Query 291 ACTCTGCGCGACGGTAGAAGAAATGGGAAGCGAATTCGATGGTGGTTTCGTAGATCAAAG 350
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 242 GCTCTGCGCGACGGTAGAAGAGATGGGAAGCGAGTTCGATGGTGGTTTCGTGGATCAAAG 301
Query 351 TCTCAGAGTTCGAGATGTTATCCATCGCCATTTTCAAATCAATGGAGCTTCAGCGATCCG 410
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 302 TCTCAGAGTTCGAGATGTTATCCGTCGCCATTTTCAAATCAATGGAGCTTCAGCGATTCG 361
Query 411 TGAGCTGCCTCCGGAGCAATTTTGTAGACATGGTTATGTTCTAGGGAAAACAGCAGAAGC 470
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 362 TGAGCTACCTCCGGAGCAATTTTGTAGACATGGTTATGTTCTTGGGAAAACAGCAGAAGC 421
Query 471 TGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAA 530
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 422 TGGATTCGGAAACGAAATGTATAAGATCTTAACCTCAGCAGCGTTGAGCATAATGTTGAA 481
Query 531 CAGATCCTTGATCATTGGCCAGACCAGGGGGAAGTATCCTTTTGGTGATTACATTGCTTA 590
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 482 CAGATCATTGATCATTGGCCAGACCAGGGGGAAATATCCTTTCGGTGATTACATTGCTTA 541
Query 591 CTCAAATGCTACGTTTACAATGAGTGAAGTCAAGCATCTGTGGCGACAAAATGGCTGCGT 650
|||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 542 CTCAAATGCTACATTTACAATGAGTGAAGTGAAGCATTTGTGGCGACAAAATGGCTGCGT 601
Query 651 GAAGAAATACAAAAGGCGGCTTGTTATGAGATTGGATGATTTCGAGAAACCGGCTAAGAG 710
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 GAAGAAATACAAAAGGCGGCTTGTAATGAGATTGGATGATTTCGAGAAACCGGCTAAGAG 661
Query 711 TAATGTTC-TATGCAGTAATTGGAAGAAGTGGGAAGAAGCTATTATATGGTTTCAAGGCA 769
||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 TAATG-TCTTATGCAGTAATTGGAAGAAATGGGAAGAAGCTATTATATGGTTTCAAGGCA 720
Query 770 CGACAGACGCTGTGGCAGCTCAGTTTTTCCTCAAGAATGTGCATCCTGAGATGAGAGCTG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGACAGACGCTGTGGCAGCTCAGTTTTTCCTCAAGAATGTGCATCCTGAGATGAGAGCTG 780
Query 830 CTGCATTTGAGCTATTTGGAGAGCAAGGAAACTCGGCACCACGAGGTAATGTGTTTGGAG 889
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTGCATTTGAGCTATTTGGAGGGCAAGGAAACTCGGCACCACGAGGTAATGTGTTTGGAG 840
Query 890 AGTTGATGATGAGTCTCATATCTCCCACAAAAGATGTTAAAGAAGCAGTGGACTGGGTTC 949
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 AGTTGATGATGAGTCTTATATCTCCCACGAAAGATGTTAAAGAAGCAGTGGACTGGGTTC 900
Query 950 TACACGAGACTGGGGATCCTGATATTTCAGTGCACATGCGAATGTTGATGAGCAAATCTG 1009
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 TACACGAGACTGGGGATCCTGATATTTCGGTGCACATGCGAATGTTGATGAGCAAATCTG 960
Query 1010 TTAGACCTATGCGTGCAGCGATAAACTGTCTAGGGAAAGCAATTAACAGACTTGGCATAC 1069
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 TTAGACCTATGCGTGCAGCGATAAACTGTTTAGGGAAAGCAATTAACAGACTTGGCATAT 1020
Query 1070 CGAACCCGAGAGTGGTTATAGTGTCTGACACTCCATCTGTAGTGAAAATTATCAAAACAA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGAACCCGAGAGTGGTTATAGTGTCTGACACTCCATCTGTAGTGAAAATTATCAAAACAA 1080
Query 1130 ATATCAGCACCATTGCAGAGGTTCTACATTTTGACTATAAGCTTTTCCGAGGTGATATCG 1189
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 ATATCAGCACCATTGCTGAGGTTCTACATTTTGACTACAAGCTTTTCCGAGGTGATATCG 1140
Query 1190 CTCAACGTGGCCGCGGTTTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC 1249
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CTCAACGCGGCCGTGGATTACCAATGTTAGATTTCAGAATAAAGGATTGGGGTCCTGCAC 1200
Query 1250 CGAGGTGGGTTGCATTTGTAGATTTCTTCCTCGCGTGCCGTGCTAAACATGCGGTGATCT 1309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1201 CGAGGTGGGTTGCATTTGTAGATTTCTTCCTCGCGTGCCGTGCGAAACATGCGGTGATCT 1260
Query 1310 CCGGTGCTAACAGGCGAGTTGGGACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCGG 1369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1261 CCGGTGCTAACAGGCGAGTTGGGACTACTTATGCTCAGTTGGTTGCTGCATTAGCCGCTG 1320
Query 1370 CAAACAGTCTCAAGGATGGTTCGAGCAACTCAAGCTTTGCGTTCCTGAGTAGTTTCCAGA 1429
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 CAAACAGTCTCAAGGATGGTTCGAGCAACTCAAGCTTTGCTTTCCTGAGTAGTTTCCAGA 1380
Query 1430 GCAATTTGTTAGCAGATGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTGGAACCGAT 1489
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCAATTTGCTAGCAGACGGTCTGAAGAACCAGGTAGGTTGGGGACATGTCTGGAACCGAT 1440
Query 1490 ACGCTGGACCGTTAAGCTGTCCAAAACAGCCAAACCAATGCGCCTTCACGCCGCTTGCAC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ACGCTGGACCGTTAAGCTGTCCAAAACAGCCAAACCAATGCGCCTTCACGCCGCTTGCAC 1500
Query 1550 CTCCTGGTTGGTGGGACGGTATATGGCAATCGCCCATCCCACGGGACACTCGTAGGCTTG 1609
|||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||
Sbjct 1501 CTCCTGGTTGGTGGGACGGTTTGTGGCAATCACCCATCCAACGGGACACTCGTAGGCTTG 1560
Query 1610 CAGCTTTCGGCATTGAGCTTTCCGGGTTTGGTACGGTTAACGAAGACCGGTTCCACGCCT 1669
| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||
Sbjct 1561 CGGCTTTCGGCATTGAGCTTTCCGGGATTGGCACTGTTAACGAAGACCGGTTCCACACCT 1620
Query 1670 ATTGTAGCGCCAAGAAAGAGTACGTAAGCACTGTAACAATCATATAATGACTTCTTGAAA 1729
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1621 TTTGTAGTGCCAAGAAAGAGTACTTAAGCACTGTAACAATCATATAATGACTTCTTCAAA 1680
Query 1730 AA 1731
||
Sbjct 1681 AA 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66810289730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5