BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26960.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896580 jgi|Araly1|896580|Al_scaffold_0005_546 791 0.0
> Ahg896580 jgi|Araly1|896580|Al_scaffold_0005_546
Length=525
Score = 791 bits (428), Expect = 0.0
Identities = 494/526 (94%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 121 ATGACGAAGAAATCACTGACAATGTTTCTT-TTTATACTTCTGCAATTTCTGCTCGTAAA 179
|||| ||| |||||| ||| ||||||| || ||| | ||||||||||||||| | |||||
Sbjct 1 ATGAAGAAAAAATCAATGATAATGTTT-TTGTTTTTTCTTCTGCAATTTCTGTTTGTAAA 59
Query 180 CTCTCTATCTTCAAAGCATTCATCACCCAAACCAAAACCAGATGCAGAAATCACTATAAT 239
|||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 CTCTCTATCTCCAAAACATTCATCACCAAAACCAAAACCAGATGCAGAAATCACTATAAT 119
Query 240 GGGTTTTGTTTACTGCGATGTTTGCTCCAAAAACAGTTTCTCTAAACACAGTTACTTCAT 299
||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 120 GGGTTTTGTTTACTGCGATGTCTGTTCCAACAACAGTTTTTCTAAACACAGTTACTTCAT 179
Query 300 GTCCGGTGTGGAAGTGAGGATAGTCTGCCGATTCAAAGCAGCTTCGTCAACAACGACAGA 359
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 180 GTCCGGTGTGGAAGTGAGAATAGTCTGCAGATTCAAAGCAGCTTCGTCAACAACGAGAGA 239
Query 360 GACTATAACATTCTCTGCAAACAGAACCACCAACGAGTTTGGACTGTACAAGGTAGCCAT 419
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GACTATAACATTCTCTGCTAACAGAACCACCAACGAGTTTGGACTCTACAAGGTAGCCAT 299
Query 420 ATCTTCTCTAGATTGTGCTGATGTGGACAGTCTCGCGAGTTCTTGTCAAGCGAGTTTGAT 479
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 300 ATCTTCTCTAGATTGTGCTGATGTAGACAGCCTCGCGAGTTCTTGTCAAGCGAGTTTGAT 359
Query 480 TGGAAGAAAAAACTTCTCCGATTCTTCTTGCAACATTCCTGGTTATAGAACCACTACGGA 539
||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CGGAAGAAGAAACTTCTCGGCTTCTTCTTGCAACATTCCTGGTTATAGAACCACAACGGA 419
Query 540 TCAGGTCTTGTTTAAGTCTCAACA-GTCTAATTCCTGTGTTTATGGATTCAATGCTTTGA 598
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 420 TCAGGTCTTATTTAAGTCTCAA-AGGTCTAATTCCTGTGTTTATGGATTCAATGCTTTGA 478
Query 599 ATTTCAGACCGTTCAAGAGGGATCTTGCCTTGTGTGGCAAGAAATA 644
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATTTCAGACCGTTCAAGAGGGATCTTGCCTTGTGTGGCAAGAAATA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5