BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26980.1
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484484 jgi|Araly1|484484|fgenesh2_kg.5__476__AT3G26980.1 1321 0.0
> Ahg484484 jgi|Araly1|484484|fgenesh2_kg.5__476__AT3G26980.1
Length=914
Score = 1321 bits (715), Expect = 0.0
Identities = 861/927 (93%), Gaps = 27/927 (3%)
Strand=Plus/Plus
Query 2 GTCTTTTTATCTTATTTCCTTACTCGTCAGGGATTCCCTGTAACGCGGCAATCCTGACGA 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTTTTTATCTTATTTCTTTACTCGTCAGGGATTCCCTGTAACGCGGCAATCCTGACGA 60
Query 62 AAGACATATCAGAAACTTTGATA-GAATCACATAGCAGCAATCTCTTAGCTGGA-TTTTA 119
|||| |||||||||| ||| ||| |||||| ||||||||||||||||||||||| |||||
Sbjct 61 AAGATATATCAGAAATTTTTATAGGAATCAGATAGCAGCAATCTCTTAGCTGGATTTTTA 120
Query 120 CCAGCTTCACTTTG-AGATTAGGTCATTTACCCTTTTAAGGGTTTCTCTCCTACTTTCTT 178
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CCAGCTTCAC-TTGAAGATTAGGTCATTTACCCTTTTAAGGGTTTCTCTCCTAC-TTCTT 178
Query 179 GATTC-TCTTCATTCCCAAGACTCAAAACCTAGCAAACTTGGACATTTGGATTGAGTGTC 237
|| || || || ||||||||| ||| |||||||| |||| |||||||||||||||||||
Sbjct 179 GA-TCTTCCCCACTCCCAAGACGCAAGACCTAGCACACTTTGACATTTGGATTGAGTGTC 237
Query 238 TCTAGTCCGGGTCTCATTTGGGTGGATTCTTTCTGGTGAAATCTTTCTTGTGAGAGTTTT 297
|||| | ||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 238 TCTATTTCGGGTCTCATTTGGGTGGATTCTTTGTGGTGAAA----TCTTGTGAGTGTTTT 293
Query 298 GTATTGGGAGAAAGAGATAATCAAATGCCGGAGGAAGATTTGGTAGAACTGAAATTCCGG 357
|| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 294 GTTTTGGAAGAAAGAGA-AATCAAATGCCGGAGGAAGATTTGGTAGAACTTAAATTCCGG 352
Query 358 TTATATGACGGTTCAGATGTTGGCCCGTTTCAGTACTCTCCAACCGCCACAGTGTCAATG 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 353 TTATATGACGGTTCAGATGTTGGCCCGTTTCAGTACTCTCCAACTGCCACAGTCTCAATG 412
Query 418 CTTAAGGAGAGAATTGTCTCTGAATGGCCTAAAGACAAGAAGATTGTTCCAAAATCAGCT 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTCAAGGAGAGAATTGTCTCTGAATGGCCTAAAGACAAGAAGATTGTTCCAAAATCAGCT 472
Query 478 AGTGACATCAAGTTGATAAATGCTGGTAAGATTTTGGAGAATGGTAAAACTGTTGCACAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AGTGACATCAAGTTGATAAATGCTGGTAAGATTTTGGAGAATGGTAAAACTGTTGCACAG 532
Query 538 TGTAAAGCTCCATTTGATGATCTCCCTAAATCCGTCATTACAATGCATGTTGTCGTGCAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TGTAAAGCTCCATTTGATGATCTCCCTAAATCCGTCATTACAATGCATGTTGTCGTGCAA 592
Query 598 CTGTCTCCAACAAAAGCAAGACCAGAGaaaaaaaTCGAAAAGGAAGAAGCCCCACAGAGA 657
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCGTCTCCAACAAAAGCAAGACCAGAGAAAAAAATCGAAAAGGAAGAAGCCCCACAGAGA 652
Query 658 AGCTTTTGCTCATGTACCATAATGTGAGAACAACAACAAGTCCCAAGTCAAAAAATCTGA 717
|||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 653 AGCTTTTGCTCATGTACCATAATGTGAGAACAACAAGTAGTCCC--GTCTAAAAATCTGT 710
Query 718 AAGAGTTAAGTTTTGATTCTCTGTGGTATTTG--CTAAAAGACCATATAAACATAAACTA 775
||||||||||||||| ||||||||||| |||| |||||||||| || ||||||||||||
Sbjct 711 AAGAGTTAAGTTTTGCTTCTCTGTGGT-TTTGTACTAAAAGACCCTA-AAACATAAACTA 768
Query 776 CC------GC--TTCATATTCGACATTTTCTTCACAAGTTCAAAGAAACCTTCATCTATG 827
|| || ||||| ||||| || ||||||||||||||| ||||| ||||||| |||
Sbjct 769 CCATTTCCGCGCTTCATTTTCGATATGTTCTTCACAAGTTCATAGAAATCTTCATCAATG 828
Query 828 GCGTTATAAAGCTAGTCTATTAGAGTTGTTTCTCTTGAGCTGTGATGGAAAAACTCTTGT 887
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| || |
Sbjct 829 GCGTTATAAAGCTAGTCTATTAGAGTTGTTTCTTTTGAGTTGTGATG-AAAAACTTTTCT 887
Query 888 TTGGAGCATCCTTTATAAAGATAAGAG 914
|||||||||||||||||||||||||||
Sbjct 888 TTGGAGCATCCTTTATAAAGATAAGAG 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5