BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G26990.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484483 jgi|Araly1|484483|fgenesh2_kg.5__475__AT3G26990.1 2870 0.0
> Ahg484483 jgi|Araly1|484483|fgenesh2_kg.5__475__AT3G26990.1
Length=1961
Score = 2870 bits (1554), Expect = 0.0
Identities = 1836/1968 (93%), Gaps = 35/1968 (2%)
Strand=Plus/Plus
Query 1 TCCAAATCTAACCACGACGAAGATTATTTCCAAACTGCTCAAACTTCTCCGGC-GAGTTT 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 TCCAAATCTAACCACGACGAAGATTATTTCCAAACTGCTCAAACTTCTCCGGCGGA-TTT 59
Query 60 TGGAGACATTATCGGAAAACGGCGCCATTTTATTAACCGTGATTTTCGTTGGCTC-CTTC 118
|||||||||||||||| ||||||||| |||| || ||||||||||||||| || | ||||
Sbjct 60 TGGAGACATTATCGGAGAACGGCGCCGTTTTCTTCACCGTGATTTTCGTT-GCCCACTTC 118
Query 119 ACTGCTAATTGTTAGCATCATCGCAACAATCTCCTTCTTCTGATTGATTCTCTCTATTTT 178
||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 ACTTCTAA-TGTTAGCTTCATCGCAACAATCTCCTTCTTCTGATTGATTCTCTCTGTTTT 177
Query 179 GTGAAGGCACACTGGTTTTTGAGCTGGTGTTGAAGCAATGGGTAGTTCATTTAACGCTCA 238
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 178 GTGAAGGCACACTGGGTTTTGAGCTGGTGTTGAAGCAATGGGTGGTTCATTTAATGCTCA 237
Query 239 GATATTAGTTGAGAAGCTTGCCAAGCTCAACAATTCTCAAGCAAGCATAGAGACTTTATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATATTAGTTGAGAAGCTTGCCAAGCTCAACAATTCTCAAGCAAGCATAGAGACTTTATC 297
Query 299 ACATTGGTGTATCTTTCACATGAACAAAGCAAAACATGTTGTAGAAACATGGGGTAGGCA 358
||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 298 ACATTGGTGTATCTTTCACATGAACAAGGCAAAGCATGTTGTGGAAACAAGGGGTAGGCA 357
Query 359 GTTTCACTGTGCCCCACGTGAGCAACGTTTGGCATACTTGTACCTCGCGAATGATATCTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTTTCACTGTGCCCCACGTGAGCAACGTTTGGCATACTTGTACCTCGCGAATGATATCTT 417
Query 419 GCAGAATAGCAGGCGAAAGGGTTCGGAGTTTGTAGGTGAGTTCTGGAAAGTACTCCCTGA 478
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 418 GCAGAATAGCAGGCGAAAAGGTTCAGAGTTTGTAGGTGAGTTCTGGAAAGTACTGCCTGA 477
Query 479 TGCTCTTCGTGATATGATTGAAAATGGTGATGACTTTGGAAGAAAATCCGCACGCCGATT 538
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 478 TGCTCTTCGTGATATGATTGAAAATGGTGATGACTTTGGAAGAAAATCTGCACGTCGATT 537
Query 539 GGTTAATATATGGGAAGAAAGGAAAGTTTTTGGATCCCGTGGACAAATTCTCAAAGAAGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTTAATATATGGGAAGAAAGGAAAGTTTTTGGATCCCGTGGACAAATTCTCAAAGAAGA 597
Query 599 ACTTCTGGGAAGACAGCCTGAAAATGGAACCAGAAACGGAAATCTCGTGCCACTTAAGCT 658
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 598 ACTTCTGGGAAGGCAGCCTGAAAATGGAACCAGAAATGGAAATCTCGTGCCACTAAAGCT 657
Query 659 TTCTGTTCCTCAGAGACAGGTAAATGGATCCACACTGGAGAAAGTAGTGTCTGCTGTTGA 718
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct 658 TTCTGTTCCTCAGAGACAGGCAAATGGATCTACACTGGAGAAAGTAGTGTCTGCCGTTGA 717
Query 719 AGTTCTTCACGGCGTTCAGATTGATGAGGATGCTCTTGTTGGAAAATCTACTAATGCTGC 778
||||||||| || ||||| ||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 718 AGTTCTTCATGGTGTTCAAATTGATGAGGATGCTATTGTTGGAAAATGTACCAATGCTGC 777
Query 779 TGGTTACCTTGAGAAAGCAACACAAGAGGTTGAAAGAGATCTTAGTTCAGGACACGCCCC 838
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 778 TGGTTACCTTGAGAAAGCAACACAAGAGGTGGAGAGAGATCTTAGTTCAGGACACACCCC 837
Query 839 TGGGCCAGCGGTGGTGAAGGAGTTGCAGGGACAACATGTCATATTGAGAGACTGCATCGA 898
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 TGGGCCAGCGGTGGTAAAGGAGTTGCAGGGACAACATGCCATATTGAGAGACTGCATCGA 897
Query 899 ACAGCTAGGGGCAATGGAGACATCCAGAACAAGTCTTATCTCACATTTGAGAGAAGCTTT 958
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 898 ACAGCTAGGGGCAATGGAGACATCCAGAACAAATCTTATCTCACATCTGAGAGAAGCTTT 957
Query 959 ACAAGAACAGGAACTCAAGCTGGAGCAAGTCCGTAACCACCTTCAGATTGCTCGGTTTCA 1018
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 958 ACAAGAACAGGAACTCAAGCTGGGGCAAGTCCGCAACCACCTTCAGATTGCTCGGTTTCA 1017
Query 1019 ATCAGACCGAACTGGTGATCTCTGCAGACAGCTTCTAGACCATGGTGGTAGTTCACAGCC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 ATCAGACCGAACTGGTGATCTCTGCAGACAGCTTCTAGACCATGGTGGTAGTTCACGGCC 1077
Query 1079 TCCTGCTACAGAAGAAGAAGAGTCAAAAGAAGTTATCAAAGTTTCATCCACTGCAGCAGC 1138
|||||||||||||||||||||||||||||||| |||||| || ||||| ||| ||||||
Sbjct 1078 TCCTGCTACAGAAGAAGAAGAGTCAAAAGAAGCCATCAAACTTCCATCCGCTGTAGCAGC 1137
Query 1139 ACCACAAAGCTTCACACACAGCGATGTGGAACAATCTGCACCAGTTATGTTTGCCTCAAA 1198
||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||
Sbjct 1138 ACCACAAAGCTTCACACACAGTGATGTGGAACAATCTGCACCGGTTATGTTTACTTCAAA 1197
Query 1199 CCCAACTCAATC-GCTGGAAGACCCAAGAAAAACTGCTGCTGCTGCAGTGGTAGCTAAGC 1257
|||||||||| | | |||| ||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1198 CCCAACTCAAACAGTTGGA-GACCCAAGAAAAACTGCGGCTGCCGCAGTGGTAGCAAAGC 1256
Query 1258 TAACTGCTTCAACTTCCTCAGCCGAGATGCTCTCCTATGTTCTCTCCTCCTTAGCCTCCG 1317
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 TAACTGCCTCAACTTCCTCAGCCGAGATGCTCTCCTATGTTCTCTCATCCTTAGCCTCCG 1316
Query 1318 AAGGCATCATCGGAAACAACAACCCACCTGCTGTAACAGAAACTCTATCATCCGTCGATT 1377
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1317 AAGGCCTCATCGGAAACAACAACCCACCTGCTGTAACAGAAACTCTATCTTCCGTCGACT 1376
Query 1378 TCCCACCAGAGAAAAGACCTAAGCTTCAAAATCATGACCAGTCGTATCTCTCACCGCACC 1437
|||||||||||||||||| ||||||||||| || |||||||| |||||| |||||||||
Sbjct 1377 ACCCACCAGAGAAAAGACCCAAGCTTCAAAACCAAGACCAGTCCTATCTCCCACCGCACC 1436
Query 1438 ATCAGAACACTGCAACAACATCATCCTCCACACCCCCACAACCGCTTCCACCACCACCAC 1497
| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1437 AACAGAACACTGCAACAACATCATCCACCACACCCCCACCACCGCTTCCACCACCACCAC 1496
Query 1498 CATTCCAGCTTCAACCTCAGTTTTTGCAGCCGTTACAGCCTCCCGGGCCAGTAAACCACA 1557
|||||||||||||||| ||||| |||||||| ||||||||||| || || ||||||||||
Sbjct 1497 CATTCCAGCTTCAACCGCAGTTCTTGCAGCCCTTACAGCCTCCTGGTCCTGTAAACCACA 1556
Query 1558 CACCATTCAACTACACCATAGCAACCTCTACTGCAACCACTCAGCA--A-CAACAACAA- 1613
|||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||
Sbjct 1557 CACCATTCAACTACACCATAGCAACCACTACTGCAACCACACAGCAGCAGCAACAACAAC 1616
Query 1614 ----G-AACAA---G-----G-TCCT--T-GGGTACCTGGGCTCACTCAACTTTCAACAA 1656
| ||||| | | |||| | |||| |||||||||||||||||||||||||
Sbjct 1617 AACAGCAACAACAAGAACAAGGTCCTCCTTGGGTTCCTGGGCTCACTCAACTTTCAACAA 1676
Query 1657 CCTCTGCTCCATCGGAGAATTCATACCAGAAGTTTCAGGGACAAGATGGTTTCTATGGCA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCTCTGCTCCATCGGAGAATTCATACCAGAAGTTTCAGGGACAAGATGGTTTCTATGGCA 1736
Query 1717 TTAACTCATCTGTGCCTATTACACCTGTCACTCGCCAGTAGTGTAAATCTGTTCGTAGGG 1776
|||||||||| ||||||||||||||||||| ||| |||||| ||||||||||| |||||
Sbjct 1737 TTAACTCATCAGTGCCTATTACACCTGTCAGTCGGCAGTAGAGTAAATCTGTTA-TAGGG 1795
Query 1777 GTTCA-TATAGCAAAAAGTTCACttt-tttttttggtttttttttGTTAAATATAGTTTC 1834
| | | |||||||||||| || |||| |||||||||||||||| ||||||||||||||
Sbjct 1796 GGTGAATATAGCAAAAAGCTCGCTTTGTTTTTTTGGTTTTTTT--GTTAAATATAGTTTT 1853
Query 1835 AATGGGCTTTTGATAATTAGGATTTTATGTTCTTAAAATGTGCTTTGTATGCTTTCTAAT 1894
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1854 AATGGTCTTTTGATAATTAGGATTTTACGTTCTTAAAATGTGCTCTGTATGCTTTCTAAT 1913
Query 1895 TGTGCGT-CTAATCCAA-GGTTTCAACTCTGTAAACATATCATAAAAA 1940
||||||| |||||| || || |||| |||||||||||| |||||||||
Sbjct 1914 TGTGCGTACTAATCAAAAGGCTTCATCTCTGTAAACATTTCATAAAAA 1961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5