BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27000.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484485 jgi|Araly1|484485|fgenesh2_kg.5__477__AT3G27000.1 2246 0.0
> Ahg484485 jgi|Araly1|484485|fgenesh2_kg.5__477__AT3G27000.1
Length=1424
Score = 2246 bits (1216), Expect = 0.0
Identities = 1374/1446 (95%), Gaps = 27/1446 (2%)
Strand=Plus/Plus
Query 24 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAGGTTTTTTCTTTTGTTCCCT 83
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAAG-TTTTTCTTTTGTTCCCT 59
Query 84 GAGAGATCGAATCGAAGAAATCGAAATTTTTGTACTTCGATAAAAATCTGTAGTCTCTAT 143
|||||||||||||||||||||| ||| ||||| ||||||||||||||| | | |||||
Sbjct 60 GAGAGATCGAATCGAAGAAATC-TGATTGTTGTAATTCGATAAAAATCTGAAATTTCTAT 118
Query 144 AG-AAATCGGAGAAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTAT 202
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAAAATCGGAGGAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTAT 178
Query 203 GTAAAATGTGGATTTGCTGGAGAGAATTTCCCAACGTCTGTTTTCCCCTGTGTCGTGGGA 262
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 179 GTGAAATGTGGATTTGCTGGAGAGAATTTTCCAACATCTGTTTTCCCCTGTGTCGTGGGA 238
Query 263 AGGCCATTGCTTCGGTATGAAGAATCACTCATGGAGCAACAAGTCAAGGATATAGTTGTT 322
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 AGACCGTTGCTTCGGTATGAAGAATCACTCATGGAGCAGCAAGTCAAGGATATAGTTGTT 298
Query 323 GGGGAGACTTGCTCTGAGCTCCGGCATCAATTGGATATAAATTATCCTGTCCACAATGGT 382
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 299 GGGGAGACTTGCTCTGAGCTTCGACATCAATTGGATATAAATTATCCTGTCCATAATGGT 358
Query 383 ATTGTGCAGAATTGGGATGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATTG 442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATTGTGCAGAATTGGGAGGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATTG 418
Query 443 AAAATCAATCCATCTGACTGTAAGATATTGCTCACGGATCCACCTCTTAATCCGTCCAAG 502
|||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 419 AAAATCAATCCATCAGAGTGTAAGATATTGCTCACAGATCCACCTCTTAATCCCTCCAAG 478
Query 503 AATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATT 538
Query 563 CAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGAT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGAT 598
Query 623 TCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCTT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCTT 658
Query 683 ACTAAAAGAATGAATGTTGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATCT 742
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACCAAAAGAATGAATGTCGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATCT 718
Query 743 CGACGAGGATATGCGATGAACAAAACAGCTGACTTTGAGACGGTTAGGGAAATTAAAGAG 802
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 719 CGACGAGGATATGCGATGAATAAAACGGCTGACTTTGAGACGGTTAGGGAAATTAAAGAG 778
Query 803 AAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAACT 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAACC 838
Query 863 ATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGGGTTATCAAAGTAGGCACTGAAAGA 922
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 839 ATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGAGTCATAAAAGTAGGCACTGAAAGA 898
Query 923 TTCCAAGCACCTGAAGCGCTTTTTACTCCGGAACTCATTGATGTTGAAGGTGATGGAATG 982
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 899 TTCCAAGCACCTGAAGCGCTGTTTACACCGGAACTCATTGATGTTGAAGGTGATGGAATG 958
Query 983 GCAGACATGGTTTTCCGATGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTAC 1042
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCAGACATGGTTTTCCGCTGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTAC 1018
Query 1043 CAACACATAGTTTTAAGCGGAGGTAGCACCATGTACCCAGGATTACCTAGCCGTCTTGAG 1102
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAACACATAGTTTTAAGTGGAGGAAGCACCATGTACCCAGGATTACCTAGCCGTCTTGAG 1078
Query 1103 AAAGAAATACAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTGAAG 1162
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 AAAGAAATCCAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTAAAG 1138
Query 1163 AAACTCAGATTGCGGATCGAAGATCCACCGAGAAGGAAACACATGGTATACCTCGGAGGT 1222
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 AAACTCAGATTGCGGATCGAAGATCCACCGAGGAGGAAACACATGGTATACCTCGGAGGT 1198
Query 1223 GCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAGGACTAT 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1199 GCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAAGACTAT 1258
Query 1283 ATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAATAACTTTCAAACGCA 1342
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1259 ATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAA-AACTTTCAAAAGCA 1317
Query 1343 GAACTCATACTTGTACTTGTACCCCttttttttACTACCGTCAGGATGATTTAATTCCGT 1402
||||||| || | || | || || | |||||||||||||||||||||
Sbjct 1318 AAACTCAT--TT-T--TT--A----TT------AC--C-GTCAGGATGATTTAATTCCGT 1357
Query 1403 TTGTGAATTCAGTATTTTAGGTTTCAAAGTTTGAGTACAATTGGTTGC-AGTTAGGGATC 1461
|||||||| |||||||||||||||||||||||||| | |||||||||| | ||||| |||
Sbjct 1358 TTGTGAAT-CAGTATTTTAGGTTTCAAAGTTTGAGAAGAATTGGTTGCGA-TTAGGAATC 1415
Query 1462 CAAAAT 1467
||||||
Sbjct 1416 CAAAAT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5