BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27000.1 Length=1551 Score E Sequences producing significant alignments: (Bits) Value Ahg484485 jgi|Araly1|484485|fgenesh2_kg.5__477__AT3G27000.1 2246 0.0 > Ahg484485 jgi|Araly1|484485|fgenesh2_kg.5__477__AT3G27000.1 Length=1424 Score = 2246 bits (1216), Expect = 0.0 Identities = 1374/1446 (95%), Gaps = 27/1446 (2%) Strand=Plus/Plus Query 24 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAGGTTTTTTCTTTTGTTCCCT 83 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1 CAAGTAGAGAAGAGTGATTCTTCGCTTCGATTCAAAGACAAG-TTTTTCTTTTGTTCCCT 59 Query 84 GAGAGATCGAATCGAAGAAATCGAAATTTTTGTACTTCGATAAAAATCTGTAGTCTCTAT 143 |||||||||||||||||||||| ||| ||||| ||||||||||||||| | | ||||| Sbjct 60 GAGAGATCGAATCGAAGAAATC-TGATTGTTGTAATTCGATAAAAATCTGAAATTTCTAT 118 Query 144 AG-AAATCGGAGAAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTAT 202 || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 AGAAAATCGGAGGAGATGGACAACAAAAACGTCGTCGTTTGCGACAACGGCACCGGTTAT 178 Query 203 GTAAAATGTGGATTTGCTGGAGAGAATTTCCCAACGTCTGTTTTCCCCTGTGTCGTGGGA 262 || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 179 GTGAAATGTGGATTTGCTGGAGAGAATTTTCCAACATCTGTTTTCCCCTGTGTCGTGGGA 238 Query 263 AGGCCATTGCTTCGGTATGAAGAATCACTCATGGAGCAACAAGTCAAGGATATAGTTGTT 322 || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 239 AGACCGTTGCTTCGGTATGAAGAATCACTCATGGAGCAGCAAGTCAAGGATATAGTTGTT 298 Query 323 GGGGAGACTTGCTCTGAGCTCCGGCATCAATTGGATATAAATTATCCTGTCCACAATGGT 382 |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 299 GGGGAGACTTGCTCTGAGCTTCGACATCAATTGGATATAAATTATCCTGTCCATAATGGT 358 Query 383 ATTGTGCAGAATTGGGATGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATTG 442 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ATTGTGCAGAATTGGGAGGATATGGAACATGTTTGGGATCATGCTTTCTATAACGAATTG 418 Query 443 AAAATCAATCCATCTGACTGTAAGATATTGCTCACGGATCCACCTCTTAATCCGTCCAAG 502 |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 419 AAAATCAATCCATCAGAGTGTAAGATATTGCTCACAGATCCACCTCTTAATCCCTCCAAG 478 Query 503 AATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATT 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 AATCGTGAAAAAATGATTGAGACAATGTTTGAGAAATACAATTTCGCTGGCGTTTTCATT 538 Query 563 CAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGAT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 CAAATCCAAGCCGTTTTGACTCTCTATGCTCAAGGTTTGCTAACTGGTTTGGTTATTGAT 598 Query 623 TCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCTT 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCTGGTGATGGTGTTACTCATGTGGTTCCGGTGGTTGACGGCTACTCGTTCCCTCATCTT 658 Query 683 ACTAAAAGAATGAATGTTGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATCT 742 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ACCAAAAGAATGAATGTCGCTGGCAGACACATAACAGCATATCTCGTTGATCTACTATCT 718 Query 743 CGACGAGGATATGCGATGAACAAAACAGCTGACTTTGAGACGGTTAGGGAAATTAAAGAG 802 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 719 CGACGAGGATATGCGATGAATAAAACGGCTGACTTTGAGACGGTTAGGGAAATTAAAGAG 778 Query 803 AAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAACT 862 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AAGCTCTGCTATATAAGTTATGATTACAAGAGAGAATCTCAGCTTGGCCTTGAGACAACC 838 Query 863 ATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGGGTTATCAAAGTAGGCACTGAAAGA 922 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 839 ATCCTTGTTAAGAATTATACTCTTCCAGATGGGAGAGTCATAAAAGTAGGCACTGAAAGA 898 Query 923 TTCCAAGCACCTGAAGCGCTTTTTACTCCGGAACTCATTGATGTTGAAGGTGATGGAATG 982 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 899 TTCCAAGCACCTGAAGCGCTGTTTACACCGGAACTCATTGATGTTGAAGGTGATGGAATG 958 Query 983 GCAGACATGGTTTTCCGATGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTAC 1042 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GCAGACATGGTTTTCCGCTGTATTCAAGAAATGGATATTGATAACCGCATGATGCTCTAC 1018 Query 1043 CAACACATAGTTTTAAGCGGAGGTAGCACCATGTACCCAGGATTACCTAGCCGTCTTGAG 1102 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1019 CAACACATAGTTTTAAGTGGAGGAAGCACCATGTACCCAGGATTACCTAGCCGTCTTGAG 1078 Query 1103 AAAGAAATACAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTGAAG 1162 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 AAAGAAATCCAGGATCGGTATCTCGACACAGTTCTAAAAGGAAACAAAGATGGCTTAAAG 1138 Query 1163 AAACTCAGATTGCGGATCGAAGATCCACCGAGAAGGAAACACATGGTATACCTCGGAGGT 1222 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1139 AAACTCAGATTGCGGATCGAAGATCCACCGAGGAGGAAACACATGGTATACCTCGGAGGT 1198 Query 1223 GCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAGGACTAT 1282 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1199 GCTGTTCTTGCAGGAATCATGAAGGACGCACCAGAGTTCTGGATCAATAGAGAAGACTAT 1258 Query 1283 ATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAATAACTTTCAAACGCA 1342 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1259 ATGGAAGAAGGAATTAATTGTTTGAATAAAATGAGCCAAGCTTAA-AACTTTCAAAAGCA 1317 Query 1343 GAACTCATACTTGTACTTGTACCCCttttttttACTACCGTCAGGATGATTTAATTCCGT 1402 ||||||| || | || | || || | ||||||||||||||||||||| Sbjct 1318 AAACTCAT--TT-T--TT--A----TT------AC--C-GTCAGGATGATTTAATTCCGT 1357 Query 1403 TTGTGAATTCAGTATTTTAGGTTTCAAAGTTTGAGTACAATTGGTTGC-AGTTAGGGATC 1461 |||||||| |||||||||||||||||||||||||| | |||||||||| | ||||| ||| Sbjct 1358 TTGTGAAT-CAGTATTTTAGGTTTCAAAGTTTGAGAAGAATTGGTTGCGA-TTAGGAATC 1415 Query 1462 CAAAAT 1467 |||||| Sbjct 1416 CAAAAT 1421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58087623625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5