BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27010.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484486 jgi|Araly1|484486|fgenesh2_kg.5__478__AT3G27010.1 1991 0.0
> Ahg484486 jgi|Araly1|484486|fgenesh2_kg.5__478__AT3G27010.1
Length=1438
Score = 1991 bits (1078), Expect = 0.0
Identities = 1343/1460 (92%), Gaps = 62/1460 (4%)
Strand=Plus/Plus
Query 1 GTAAATTCCC-AAAGaaaaaaaaaaaaaCTCGATACCTTTTGTTTTACAAAGTCGTCACA 59
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GTAAATTCCCAAAAG-AAAAAAAAAAAACTCGATACCTTTTCTTTTACAAAGTCGTCACA 59
Query 60 ATTCTGAAACCCTTAATTGAATCC------AAGAGA-ATTTTTGATTAAATTAAGTCTCT 112
||||| |||||||||||||||||| |||||| | |||||||||| ||||| |||
Sbjct 60 ATTCTCAAACCCTTAATTGAATCCAAGAGAAAGAGAGAATTTTGATTAATTTAAG--TCT 117
Query 113 GGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGTCACC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 118 GGACCCTGAAGTCCCCACACAAGCAAGCTTCGATGGATCCCAAGAACCTAAATCGACACC 177
Query 173 AAGTACCAAATTTCTTGAACCCACCACCACCACCGCGAAATCAGGGTTTGGTAGATGATG 232
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 178 AAGTACCAAATTTCTTGAACCCACCACCACCA---CGAAATCAGGGTTTGGGAGATGGTG 234
Query 233 ATGCTGCTTCTGCTGTTGTTTCCGACGAGAATCGCAAACCAACAACTGAGATTAAAGATT 292
|| || || | | | | ||||||||||||||||||||| |||||||||||||||
Sbjct 235 TTGTTG-TT-T-CCGACGACAAGGACGAGAATCGCAAACCAACATCTGAGATTAAAGATT 291
Query 293 TCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACA--A-GAAGAGTCAGAATCAGA 349
||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 292 TCCAGATCGTGGTCTCTGCTTCCGACAAAGAACCAAACACTAAGAAGACTCAGAATCAGA 351
Query 350 ACCAGCTTGGTCCTAAGAGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAG 409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ACCAGCTTGGTCCTAAGCGAAGCTCTAACAAAGACAGACACACTAAAGTCGAAGGTAGAG 411
Query 410 GTCGACGAATTCGGATGCCTGCTCTTTGTGCTGCTAGGATTTTTCAATTGACTAGAGAAT 469
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 412 GTCGAAGAATTCGGATGCCTGCTCTTTGTGCTGCTAGAATTTTTCAATTGACTAGAGAAT 471
Query 470 TGGGTCATAAATCTGATGGTGAAACTATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGA 529
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 472 TGGGTCATAAATCGGATGGTGAAACAATCCAGTGGCTGCTTCAACAAGCTGAGCCATCGA 531
Query 530 TTATTGCAGCTACTGGTTCAGGAACTATACCGGCCTCTGCTTTAGCTTCTTCAGCTGCAA 589
|||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 532 TTATTGCAGCCACCGGTTCAGGAACTATACCTGCCTCTGCTTTAGCTTC---AGCTGCAA 588
Query 590 -C-CT--CT--AACCATCATCAAGGTGGGTCTCTTACTGCTGGTTTAATGATCAGTCATG 643
| || || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 589 GCTCTGTCTCTAACCATCATCAAGGTGGGTCTCTTACTACTGGTTTAATGATCAGTCATG 648
Query 644 ACTTAGATGGTGGGTCTAGTAGTAGTGGTAGACCATTAAATTGGGGGATTGGTGGCGGTG 703
||||||||||||||||||||||| | | |||||||||||||||||| |||||||| ||||
Sbjct 649 ACTTAGATGGTGGGTCTAGTAGT-G-G-TAGACCATTAAATTGGGGAATTGGTGGAGGTG 705
Query 704 AAGGAGTTTCTAGGTCAAGTTTACCAACTGGGTTATGGCCAAATGTAGCTGGGTTTGGTT 763
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 706 AAGGAGCTTCTAGGTCAAATTTACCAACTGGGTTGTGGCCAAATGTAGCTGGGTTTGGTT 765
Query 764 CTGGTGTGCCAACCACTGGTTTAATGAGTGAAGGAGCTGGTTATAGAATTGGGTTTCCTG 823
||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 766 CTGGTGTACCAACTACTGGGTTGATGAGTGAAGGAGCTGGGTATAGAATTGGGTTTCCTG 825
Query 824 GTTTTGATTTTCCTGGTGTTGGTCATATGAGTTTTGCATCTATTTTGGGTGG-G------ 876
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 826 GTTTTGAGTTTCCTGGTGTTGGTCCTATGAGTTTTGCATCTATTTTGGGTGGTGCTGGTG 885
Query 877 --AATCATAATCAGATGCCTGGACTTGAGTTAGGCTTGTCTCAAGAAGGGAATGTTGGTG 934
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 886 GGAATCATAATCAGATGCCTGGACTTGAGTTAGGGTTGTCTCAAGAAGGGAATGTTGGGG 945
Query 935 TTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCA-G-----GCTCAGG 988
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 946 TTTTGAATCCTCAGTCTTTTACTCAGATTTATCAACAGATGGGTCAAGCTCAAGCTCAGG 1005
Query 989 CTCAAGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGAACATCAGCAAG 1048
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1006 CTCAGGCTCAAGGTAGGGTTCTTCACCATATGCATCATAACCATGAAGATCATCAGCAAG 1065
Query 1049 AGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAAAGGATTGGGttttttttt 1108
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1066 AGAGTGGTGAGAAAGATGATTCTCAAGGCTCAGGTCGTTAAA-GGATTG--TTTTTTTTT 1122
Query 1109 GTATCTTCTGGATTTGAAAAAGCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTT 1168
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1123 -TATCTTCTGGATTTGAAAA-GCTTTTGGCTTTTGTTTTGTGATAATATTGTTGTAATTT 1180
Query 1169 GTACCACCATGGAGAAGAAAAAGAAAA-GG------TTATATACTGAGTGAGAGTGATAA 1221
||| ||| ||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1181 GTATCACTATGGAGAAGAAAAAGAAAAAGGAAAAGGTTTTATACTGAGTGAGAGTGATAA 1240
Query 1222 TCTATACTTATTGAAACCTCTGCAAAAACACAAGGTGGAGTTTGTTGAATACACACAGCC 1281
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||
Sbjct 1241 TCTATACTTATTGAAACCTCTGCAAAAACACAGGGTGGAGTTTGTTGA-TACACAAAGCC 1299
Query 1282 AGAGAtttttttGTTTGGAGTCTTTAAGTTGCAGAGAGGCTTGTTTTTACTTGTTCTGAG 1341
| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1300 AAAGATTTTTTTGTTTGGAGTCTTTAAGTTCCAGAGAGGCTTGTTTTTACTTATTCTCTG 1359
Query 1342 TTTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCAGATAGTA-CAACAATGGTAAT 1400
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1360 TGTTGTTGCTTTTGAATATCAAGAAACCGGCTTTTTTCA-ATAGTAACAACAATGGTAAT 1418
Query 1401 GTATACTTGTCTTCCATCAC 1420
||||||||||||||||||||
Sbjct 1419 GTATACTTGTCTTCCATCAC 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5