BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27025.1 Length=1084 Score E Sequences producing significant alignments: (Bits) Value Ahg347067 jgi|Araly1|347067|fgenesh1_pg.C_scaffold_5000459 1133 0.0 > Ahg347067 jgi|Araly1|347067|fgenesh1_pg.C_scaffold_5000459 Length=891 Score = 1133 bits (613), Expect = 0.0 Identities = 808/897 (90%), Gaps = 33/897 (4%) Strand=Plus/Plus Query 31 ATGAAGCTGCTAAGTTGGATGCGAACGATAAAGCCTAATGGCTTAGACTCATCAAAGAAG 90 |||||||||||||||||||||||||| |||||||| ||||||||| || |||||||| || Sbjct 1 ATGAAGCTGCTAAGTTGGATGCGAACAATAAAGCCAAATGGCTTAAACCCATCAAAGGAG 60 Query 91 TTCAAAGGTGGTTTATGTAGTCTAAGAGCTCAGGTTTTCTCTGATGTCCAAGACATCCGC 150 |||||||||| ||| ||| ||||||||||||||| |||| | || ||||||||||||||| Sbjct 61 TTCAAAGGTGATTTCTGTTGTCTAAGAGCTCAGG-TTTC-C-GAAGTCCAAGACATCCGC 117 Query 151 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCATC-CAAAGTTGAACA 209 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 118 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCA-CTCAAAGTTGAACA 176 Query 210 GGATCTTCGGTTTGATGAAGACGAATTTTGCGGATTTCTGGCCATCGGGACGCTTGGTAC 269 |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct 177 AGATCTTCGGTTTGATGAAGACGGGTTTTGCGGATTTCTAGCGATCGGGACGCTTGGTAC 236 Query 270 AGACCCTGAGACACCAAAGTTCTCAGCTATGGTTGCAGAAGAAGATGCAACCGGAGAAAT 329 ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 237 AGAGCCTGAGACACCAAAGTTCTCAGCTATGGTTTCAGAAGAAGATGTAACCGGAGAAAG 296 Query 330 CAAGGAGATGGCCAAGCTCATTGCTAAGAAACTAGACCAGTTTCTTAAGGAATATCCTGA 389 ||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 297 AAAGGAAATGGCCAAGCTCATTACTGAGAAACTAGACAAGTTTCTTAAGGAATATCCTGA 356 Query 390 GGATACTAGAAGTAAGCGGGT--AAA-A----AT--------A-TC---GA-----ATGA 425 | ||||||| ||||| ||||| ||| | || | | || ||| Sbjct 357 GAATACTAGCAGTAATCGGGTCGAAAGATCGGATGCAAAAGAAGACAGAGATTCCCATGC 416 Query 426 ATGTCCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACCAAGGGAAGCAA 485 |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 417 ATGTTCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACGAAGAGAAGCAA 476 Query 486 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACGAGTCTCTTCAAGAGGAGACAAACAGT 545 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 477 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACTAGTCTCTTCAAGATGAGACAAAGAGT 536 Query 546 ACAAGGAGAACCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 605 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 ACAAGGAGAGCCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 596 Query 606 AAAGCTTCATGGAGCTTCTTCAAAGACAAGAAATGATGATGAAGATGATTCTATGTCCAA 665 ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| |||| Sbjct 597 AAAGCTTCATGGATCTTCTTCAAGGACAAGAAATAATGATGAAGATGATTCTATGCCCAA 656 Query 666 GAAGAAGAAAGATCTCAAAAAGAATGTTCAAACCTGCCG-ACGTAAAGTCCACCCTGTTC 724 | ||||||||| ||| ||||||| ||||||||| ||||| | |||||||||||||||||| Sbjct 657 GGAGAAGAAAGCTCTTAAAAAGAGTGTTCAAACTTGCCGGA-GTAAAGTCCACCCTGTTC 715 Query 725 TCTGTACAACTGCAATTCCACA-AGACGATAACGAGATAGATGACAGAAGAAAAGTGGAT 783 ||| |||| |||||| | || | ||||||||| ||||||||||||||||||||||||||| Sbjct 716 TCTATACACCTGCAACTGCA-AGAGACGATAATGAGATAGATGACAGAAGAAAAGTGGAT 774 Query 784 CTCAAGGTCCCTAGTCTTACTGGAGGGTTCCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 843 || |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 775 CTAAAGGTCCCTAATCTTACTGAAGGGTTTCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 834 Query 844 AGGAAACGAGAAAACTGGATCAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 900 ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 835 AGGAATCGCGAAAACTGGATTAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40372169103 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5