BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27025.1
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347067 jgi|Araly1|347067|fgenesh1_pg.C_scaffold_5000459 1133 0.0
> Ahg347067 jgi|Araly1|347067|fgenesh1_pg.C_scaffold_5000459
Length=891
Score = 1133 bits (613), Expect = 0.0
Identities = 808/897 (90%), Gaps = 33/897 (4%)
Strand=Plus/Plus
Query 31 ATGAAGCTGCTAAGTTGGATGCGAACGATAAAGCCTAATGGCTTAGACTCATCAAAGAAG 90
|||||||||||||||||||||||||| |||||||| ||||||||| || |||||||| ||
Sbjct 1 ATGAAGCTGCTAAGTTGGATGCGAACAATAAAGCCAAATGGCTTAAACCCATCAAAGGAG 60
Query 91 TTCAAAGGTGGTTTATGTAGTCTAAGAGCTCAGGTTTTCTCTGATGTCCAAGACATCCGC 150
|||||||||| ||| ||| ||||||||||||||| |||| | || |||||||||||||||
Sbjct 61 TTCAAAGGTGATTTCTGTTGTCTAAGAGCTCAGG-TTTC-C-GAAGTCCAAGACATCCGC 117
Query 151 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCATC-CAAAGTTGAACA 209
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 118 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCA-CTCAAAGTTGAACA 176
Query 210 GGATCTTCGGTTTGATGAAGACGAATTTTGCGGATTTCTGGCCATCGGGACGCTTGGTAC 269
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 177 AGATCTTCGGTTTGATGAAGACGGGTTTTGCGGATTTCTAGCGATCGGGACGCTTGGTAC 236
Query 270 AGACCCTGAGACACCAAAGTTCTCAGCTATGGTTGCAGAAGAAGATGCAACCGGAGAAAT 329
||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 237 AGAGCCTGAGACACCAAAGTTCTCAGCTATGGTTTCAGAAGAAGATGTAACCGGAGAAAG 296
Query 330 CAAGGAGATGGCCAAGCTCATTGCTAAGAAACTAGACCAGTTTCTTAAGGAATATCCTGA 389
||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 297 AAAGGAAATGGCCAAGCTCATTACTGAGAAACTAGACAAGTTTCTTAAGGAATATCCTGA 356
Query 390 GGATACTAGAAGTAAGCGGGT--AAA-A----AT--------A-TC---GA-----ATGA 425
| ||||||| ||||| ||||| ||| | || | | || |||
Sbjct 357 GAATACTAGCAGTAATCGGGTCGAAAGATCGGATGCAAAAGAAGACAGAGATTCCCATGC 416
Query 426 ATGTCCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACCAAGGGAAGCAA 485
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 417 ATGTTCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACGAAGAGAAGCAA 476
Query 486 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACGAGTCTCTTCAAGAGGAGACAAACAGT 545
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 477 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACTAGTCTCTTCAAGATGAGACAAAGAGT 536
Query 546 ACAAGGAGAACCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 605
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACAAGGAGAGCCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 596
Query 606 AAAGCTTCATGGAGCTTCTTCAAAGACAAGAAATGATGATGAAGATGATTCTATGTCCAA 665
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct 597 AAAGCTTCATGGATCTTCTTCAAGGACAAGAAATAATGATGAAGATGATTCTATGCCCAA 656
Query 666 GAAGAAGAAAGATCTCAAAAAGAATGTTCAAACCTGCCG-ACGTAAAGTCCACCCTGTTC 724
| ||||||||| ||| ||||||| ||||||||| ||||| | ||||||||||||||||||
Sbjct 657 GGAGAAGAAAGCTCTTAAAAAGAGTGTTCAAACTTGCCGGA-GTAAAGTCCACCCTGTTC 715
Query 725 TCTGTACAACTGCAATTCCACA-AGACGATAACGAGATAGATGACAGAAGAAAAGTGGAT 783
||| |||| |||||| | || | ||||||||| |||||||||||||||||||||||||||
Sbjct 716 TCTATACACCTGCAACTGCA-AGAGACGATAATGAGATAGATGACAGAAGAAAAGTGGAT 774
Query 784 CTCAAGGTCCCTAGTCTTACTGGAGGGTTCCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 843
|| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 775 CTAAAGGTCCCTAATCTTACTGAAGGGTTTCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 834
Query 844 AGGAAACGAGAAAACTGGATCAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 900
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 835 AGGAATCGCGAAAACTGGATTAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40372169103
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5