BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27027.1

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936424 jgi|Araly1|936424|scaffold_500615.1                        344    1e-94


> Ahg936424 jgi|Araly1|936424|scaffold_500615.1
Length=250

 Score =  344 bits (186),  Expect = 1e-94
 Identities = 202/210 (96%), Gaps = 0/210 (0%)
 Strand=Plus/Plus

Query  1    ATGAGCACGGATTGGGGACCTGTGATTGTAGCGGTGTCTCTATTCATCCTACTCTCACCA  60
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  21   ATGAGCACGGATTGGGGACCGGTGATTGTAGCGGTGTCTCTCTTCATCCTACTCTCACCA  80

Query  61   GGACTACTATTCCAGCTTCCCGCAAGAACGAGAGTGGTTGAATTCGGAAACATGACCACA  120
            |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct  81   GGACTACTATTCCAGCTTCCAGCAAGAACAAGAGTGGTTGAATTCGGAAACATGACTACA  140

Query  121  AGCGGTATAGCCATTTTGGTTCACGCATTTATATACTTCTGTATACTAACAATCTTGGTG  180
            ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  141  AGCGGTATAGCGATTTTAGTTCACGCATTTATATACTTCTGTATACTCACAATCTTGGTG  200

Query  181  ATTGCTATACAAATTCACATCCATTTCTAA  210
            ||||||||||||||||||||||||||||||
Sbjct  201  ATTGCTATACAAATTCACATCCATTTCTAA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7141204807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5