BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27030.1

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322830 jgi|Araly1|322830|fgenesh1_pm.C_scaffold_5000374           710    0.0  
  Ahg493879 jgi|Araly1|493879|fgenesh2_kg.7__3312__AT5G40970.1         143    1e-33


> Ahg322830 jgi|Araly1|322830|fgenesh1_pm.C_scaffold_5000374
Length=429

 Score =  710 bits (384),  Expect = 0.0
 Identities = 414/429 (97%), Gaps = 0/429 (0%)
 Strand=Plus/Plus

Query  1    ATGCCTGATTGGGGACCGGTTTTTGTCGCGGTGACGCTTTTTGTGTTGCTGACTCCGGGA  60
            ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct  1    ATGCCTGATTGGGGACCAGTTTTTGTCGCGGTGACGCTTTTCGTGTTGCTAACTCCGGGA  60

Query  61   CTGCTGATTCAAGTTCCTGGGAGAGGTCGAGTGGTTGAGTTTGGAACGTTTCAGACAAGT  120
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTGCTGATTCAAGTTCCCGGGAGAGGTCGAGTGGTTGAGTTTGGAACGTTTCAGACAAGT  120

Query  121  GGTCTCTCGGTTATTGTTCATACTCTTATTTACTTCACTCTTGTTTGTATTCTCTTGCTT  180
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GGTCTCTCAGTTATTGTTCATACTCTCATTTACTTCACTCTTGTTTGTATTCTCTTGCTT  180

Query  181  GCTCTCCAAATTCACATTTGTAACCTTTTTTCTACTTCAATGGCGGATTGGGCTCCAGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTCTCCAAATTCACATTTGTAACCTTTTTTCTACTTCAATGGCGGATTGGGCTCCAGTT  240

Query  241  CTCGTCGGCGTGGTCCTGTTCGTGATTCTCTCACCGGGACTTCTCTTCTCATTACCTGGT  300
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTCGTCGGTGTGGTCCTCTTCGTGATTCTCTCACCGGGACTTCTCTTCTCATTACCTGGT  300

Query  301  AACAACCGCACCGTAGATTTCGGTGGCCTCAAAACCAACGGCAAAGCCATCGCTGTTCAC  360
            |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  AACAACCGGACTGTAGATTTCGGTGGTCTCAAAACCAACGGCAAAGCCATCGCTGTTCAC  360

Query  361  ACTCTCATCTTCTTCGCCATTTACACCATTTTAATCCTCGCCCTCAATCTCCACATCTAC  420
            ||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct  361  ACTCTCATCTTCTTCGCTATTTACACCATTTTGATCCTCGCTCTTAATCTCCACATCTAC  420

Query  421  ACTGGCTGA  429
            |||||||||
Sbjct  421  ACTGGCTGA  429


> Ahg493879 jgi|Araly1|493879|fgenesh2_kg.7__3312__AT5G40970.1
Length=443

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 171/216 (79%), Gaps = 8/216 (4%)
 Strand=Plus/Plus

Query  218  CAATGGCGGATTGGGCTCCAGTTCTCGTCGGCGTGGTCCTGTTCGTGATTCTCTCACCGG  277
            ||||||||||||||||||||||||||||||| || ||  | |||||| | || || || |
Sbjct  23   CAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTATTATTCGTGCTCCTTTCTCCAG  82

Query  278  GACTTCTCTTCTCATTACCTGG--TAACAACCGCAC-CGTAGATTTCGGTGGCCTCAAAA  334
            | || || ||||| || || ||  |  || || ||| | |  | ||||| ||| | ||||
Sbjct  83   GTCTCCTTTTCTCGTTGCCCGGACTT-CA-CCACACTC-TCCAATTCGGCGGCATGAAAA  139

Query  335  CCAACGGCAAAGCCATCGCTGTTCACACTCTCATCTTCTTCGCCATTTACACCATTTTAA  394
            ||||||||||||| ||||| |||||||| ||||| ||||||||   |||||| || || |
Sbjct  140  CCAACGGCAAAGCTATCGCCGTTCACACACTCATTTTCTTCGCTGCTTACACGATCTTGA  199

Query  395  TCCTCGCCCTCAATCTCCACATCTACA-CTGGCTGA  429
            |||||||  |||||||||||||| ||| | ||||||
Sbjct  200  TCCTCGCTGTCAATCTCCACATC-ACAACCGGCTGA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15453013545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5