BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27040.1 Length=1077 Score E Sequences producing significant alignments: (Bits) Value Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 1269 0.0 Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 219 5e-56 Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 87.9 1e-16 Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 69.4 5e-11 Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 63.9 2e-09 Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 62.1 8e-09 > Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 Length=1089 Score = 1269 bits (687), Expect = 0.0 Identities = 968/1100 (88%), Gaps = 34/1100 (3%) Strand=Plus/Plus Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60 Query 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119 ||| || | |||||||||||||||||||||| ||||||| |||||||| || | |||||| Sbjct 61 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGT 119 Query 120 CGCTTATCCCAAGAGA--CG-TG-A--TAGGTATACTACTTCTTTCTCTCTGTTTCTATG 173 |||||||||||||||| | || | ||| |||| || | || |||| ||| |||||| Sbjct 120 CGCTTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTTTGTATCTATG 179 Query 174 TGTTCCTGATTCGGAATCTTTGCCTTCCGGATGGAGAAGACGCGCTAAACTTATTGGTTA 233 |||| ||||||| ||||||||| ||||||||||||||||| ||||||| || || | Sbjct 180 TGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAA-TT-TT-CCT- 235 Query 234 TAAC-AAAAAGT-ATTCATCATCAAGAACAATGGGGAATCATCAAGCTGATAAGAAGTTC 291 | || | ||| | |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 236 TGACTATGGAGTCA-TCATCATCAAGATCAATGGGGAATCATCAAGCTGATAAGAAGTTC 294 Query 292 ACTTGGGTGATCAAGAATTACAACTCTTTGGGTTCCGGTAGTGTTTATTCTGATACATTC 351 ||||||||||| ||||||| ||||||||||| ||||| ||| ||||| |||||||||||| Sbjct 295 ACTTGGGTGATTAAGAATTTCAACTCTTTGGATTCCGATAGAGTTTACTCTGATACATTC 354 Query 352 AAGGCCGGTCGTTGCAAGTGGCGTCTACTCGCCTTTCCCAAGGG-------AA-A-CAAT 402 ||||||| |||||||| ||| |||||||||||| ||||||||| || | ||| Sbjct 355 CAGGCCGGGCGTTGCAAATGGGGTCTACTCGCCTATCCCAAGGGATATAATAATATTAAT 414 Query 403 ATCTATGATTATTTCTTTCTGTATATATGTGTTCCTAATTCTGAGTCTTTGCCTTCCGGA 462 ||||||||||| |||| ||| ||||||| ||||||||||||| ||||||||||||||||| Sbjct 415 ATCTATGATTACTTCTCTCTTTATATATATGTTCCTAATTCTAAGTCTTTGCCTTCCGGA 474 Query 463 TGGAGAAGACGCGCTAAAGTTTCTTTTACTATGGTAAATCAAATTCCGGGAGGACTCTCC 522 |||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||| Sbjct 475 TGGAGAAGACACGCTAAATTTTCTTTTACTATGGTAACTCAAATTCCGGGAGAACTCTCC 534 Query 523 CAACAGCGAGAAGCAGTATACTGGTTTGATGAAAAGGACACAACCCA-TGGTTTTGAATC 581 | |||||||||||||| ||| ||||||||| ||||| |||||| ||| |||||| |||| Sbjct 535 CTACAGCGAGAAGCAGAATATTGGTTTGATCAAAAGAACACAA-CCAGGGGTTTTCAATC 593 Query 582 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTGATAAAGGGTTTCTCGTAAACGGAGAAGT 641 ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 594 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTCATAAAGGGTTTCTTGTAAACGGAGAAGT 653 Query 642 CAAGATTGTTGCAGAAGTAGATGTTCTTGAAGTTATTGGTGA-ATTAGATGTACCAGAGG 700 |||||||||||||||||||||||| ||||||||||||||| | | | |||||||| ||| Sbjct 654 CAAGATTGTTGCAGAAGTAGATGTGCTTGAAGTTATTGGT-ATAGTCGATGTACCCGAGA 712 Query 701 AACCAGAAAGAATTGATATCAATGGGTTTCAAGTCCCTGCTTCACAGGTAGAATCTATGA 760 |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||| Sbjct 713 AACCAGAAAGCTTTGATATCAATGGGTTTCAAGTCCCTGCTTCACAAGTAGATTCTGTGA 772 Query 761 ACAGTCTGTTTGAAAAGTATCGAGGCTTTGCATCAAAAATCTTTCCCAAGAACCAACATC 820 ||||||||||| ||||||| | |||||||||||||||| ||| ||||||||||| |||| Sbjct 773 ACAGTCTGTTTAAAAAGTACCCAGGCTTTGCATCAAAAGTCTGTCCCAAGAACCCACATT 832 Query 821 TG-AGAAAAACATTTC-TGGATGTTGTACTAAGTATGACTGAGATTCTGTGCAAGTTTCC 878 || || |||||| | | || |||||||||||||| ||| ||||||| ||||||||| || Sbjct 833 TGAAG-AAAACA-TACTTGAATGTTGTACTAAGTCTGAATGAGATTATGTGCAAGTCCCC 890 Query 879 GGA-AGAACTTTCCAGTGGTGATCTGGCAGAGGCATATTCTGCACTACGATTTGTTACAA 937 || | |||| || | ||||||||| || || ||||||||||||||||||| ||| |||| Sbjct 891 TGATA-AACTCTCTAATGGTGATCTTGCTGATGCATATTCTGCACTACGATATGTGACAA 949 Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTGAAAGAGACTGGTAAGAGTCGAC 997 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | | Sbjct 950 AAGCAGGGTTTAAGTTGGATTGGTTGGAGATGAAACTGAAAGAGACTGGTAAGACTAGGC 1009 Query 998 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGGATGCTT 1057 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1010 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGAATGCTC 1069 Query 1058 TGCTTGATTTCTTACGATGA 1077 ||||||| |||||||||||| Sbjct 1070 TGCTTGAGTTCTTACGATGA 1089 Score = 228 bits (123), Expect = 8e-59 Identities = 197/231 (85%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 265 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 324 Query 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119 ||| || | |||||||||||||||||||||| ||||||| |||||||| ||| ||||| | Sbjct 325 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGGGGTCTACT 383 Query 120 CGCTTATCCCAAGAGACGTGATAGGTAT-ACTA-CT-TCTTT-CT-CTCTGTTTCTATGT 174 ||| ||||||||| || | ||| ||| | || || | || || |||| ||| ||| | Sbjct 384 CGCCTATCCCAAGGGATATAATAA-TATTAATATCTATGATTACTTCTCTCTTTATATAT 442 Query 175 --GTTCCTGATTCGGAA-TCTTTGCCTTCCGGATGGAGAAGACGCGCTAAA 222 |||||| |||| || ||||||||||||||||||||||||| ||||||| Sbjct 443 ATGTTCCTAATTCT-AAGTCTTTGCCTTCCGGATGGAGAAGACACGCTAAA 492 Score = 209 bits (113), Expect = 3e-53 Identities = 204/246 (83%), Gaps = 13/246 (5%) Strand=Plus/Plus Query 262 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATCAAGAATTACAACTCTTTG 321 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60 Query 322 GGTTCCGGTAGTGTTTATTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTACTC 381 | ||||| ||| ||||| |||||||||||| ||||||| |||||||| || | |||| || Sbjct 61 GATTCCGATAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGTC 120 Query 382 GCCTT-TCCCAAGGGAAACAAT-A-TCTA-TGAT--TA--T-TT-CT-TTCTGTATATAT 430 || || ||||||| || || | | || | || || | || || || ||||| ||| Sbjct 121 GC-TTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTT-TGTATCTAT 178 Query 431 GTGTTCCTAATTCTGAGTCTTTGCCTTCCGGATGGAGAAGACGCGCTAAAGTTTCTTTTA 490 ||||| || ||||| | ||||||| ||||||||||||||||| ||||||| |||| || | Sbjct 179 GTGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAATTTTCCTTGA 238 Query 491 CTATGG 496 |||||| Sbjct 239 CTATGG 244 > Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 Length=849 Score = 219 bits (118), Expect = 5e-56 Identities = 333/434 (77%), Gaps = 26/434 (6%) Strand=Plus/Plus Query 619 GGGTTTCTCGTAAACGGAGAAGTCAAGATTGTTGCAGAAGTAGATGTTCTTGAAGTTATT 678 |||||||| || || |||||||||||| ||||||| || || | ||||||||||||| || Sbjct 361 GGGTTTCTGGTGAATGGAGAAGTCAAGGTTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTT 420 Query 679 GGTGAATTAGATGTACCAGAGG-AAC----------CA-GAAAGAATTGATATCAATGGG 726 || ||| |||||| || || ||| || ||||| || ||| |||||||| Sbjct 421 GGCAAATCAGATGTGTTAGTGGAAACTTTATTAGTTCAGGAAAGCATCGATGTCAATGGG 480 Query 727 TTTCAAGTCCCTGCTTCACAGGTAGAATCTATGAACAGTCTGTTTGAAAAGTATCGAGGC 786 |||||||| | | |||| |||||||| ||| |||||| ||| ||| |||| || | || | Sbjct 481 TTTCAAGTTCTTCCTTCTCAGGTAGACTCTGTGAACAATCTCTTTAAAAATTACCCAGAC 540 Query 787 TTTGCATCAAAAATCTTTCCCAAGAACCAACATCTGAGAAAAACATTTC-TGGAT-GTTG 844 ||||||||||| ||| || ||||||||| ||||||| |||| | | || || | Sbjct 541 ATTGCATCAAAATTCTGTCTGGAGAACCAACTTCTGAGAGCAACA-TACATGAATAG-CC 598 Query 845 TACTAAG-TATGACTGAGATTCTGTGCAAGTTTCCGGAAG-AACTTTCCAGTGGTGATCT 902 ||||| | | |||||||||||||| || ||| || | || |||| || |||| |||||| Sbjct 599 TACTATGCT-TGACTGAGATTCTGAGCCAGTCCCCTG-AGAAACTCTCTAGTGTTGATCT 656 Query 903 -GGCAGAGGCATATTCTGCACTACGATT-TGTTACAAAAGCAGGGTTTAAGTTGGATTGG 960 | || | ||| ||| | ||||| || | | |||||||| || ||||||||||||||| Sbjct 657 CGCCA-ATGCACATTGTACACTA-TCTTCTCTGACAAAAGCCGGTTTTAAGTTGGATTGG 714 Query 961 TTGGAGAAGAAACTGAAAGAGACTG-GTAAGAGTCGACTGCAAGAAATTGAGGAAGATTT 1019 ||||||||||||||||||||| || || | | ||| ||||| || ||||| ||||||| Sbjct 715 TTGGAGAAGAAACTGAAAGAG-CTTCGTGATACTCGGGTGCAACAACTTGAGCAAGATTT 773 Query 1020 AAAGGACTTGAAGG 1033 ||||||||||||| Sbjct 774 GAAGGACTTGAAGG 787 > Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 Length=891 Score = 87.9 bits (47), Expect = 1e-16 Identities = 137/177 (77%), Gaps = 19/177 (11%) Strand=Plus/Plus Query 616 AAAGGG-TTTCTCGTAAACGGAGAAGTC-AAGATTGTTGCAGAAG-TAGATGTTCTTGAA 672 |||||| ||||| || || |||||| || ||| ||||||| ||| |||||||||||||| Sbjct 330 AAAGGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGC-CAAGATAGATGTTCTTGAA 387 Query 673 GTTATTGGTGAATTAGATGTACCAGAGGAA-C-----CAG-A-AAG-AA---TTGATATC 720 ||| | || |||||||||| || ||||| | ||| | | || | ||| || Sbjct 388 GTTGTAGGAAAATTAGATGTTTCACAGGAATCGTTATCAGTAGTGGAAACCGTAGATGTC 447 Query 721 AATGGGTTTCAAGTCCCTGCTTCACAGGTAGAATCTATGAA-CAGTCTGTTTGAAAA 776 |||||||||||||| | | ||||||||||||||||| |||| | || |||||||||| Sbjct 448 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGC-GTTTGTTTGAAAA 503 > Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 Length=882 Score = 69.4 bits (37), Expect = 5e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974 ||||||||||||||||||||||||||||||||||||| Sbjct 683 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 719 > Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 Length=927 Score = 63.9 bits (34), Expect = 2e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974 |||||||||||||||||||||||||||| |||||||| Sbjct 707 AAGCAGGGTTTAAGTTGGATTGGTTGGAAAAGAAACT 743 > Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 Length=954 Score = 62.1 bits (33), Expect = 8e-09 Identities = 38/40 (95%), Gaps = 1/40 (3%) Strand=Plus/Plus Query 936 AAAA-GCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974 |||| | ||||||||||||||||||||||||||||||||| Sbjct 746 AAAATGTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 785 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40105308684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5