BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27040.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 1269 0.0
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 219 5e-56
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 87.9 1e-16
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 69.4 5e-11
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 63.9 2e-09
Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742 62.1 8e-09
> Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375
Length=1089
Score = 1269 bits (687), Expect = 0.0
Identities = 968/1100 (88%), Gaps = 34/1100 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60
Query 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119
||| || | |||||||||||||||||||||| ||||||| |||||||| || | ||||||
Sbjct 61 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGT 119
Query 120 CGCTTATCCCAAGAGA--CG-TG-A--TAGGTATACTACTTCTTTCTCTCTGTTTCTATG 173
|||||||||||||||| | || | ||| |||| || | || |||| ||| ||||||
Sbjct 120 CGCTTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTTTGTATCTATG 179
Query 174 TGTTCCTGATTCGGAATCTTTGCCTTCCGGATGGAGAAGACGCGCTAAACTTATTGGTTA 233
|||| ||||||| ||||||||| ||||||||||||||||| ||||||| || || |
Sbjct 180 TGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAA-TT-TT-CCT- 235
Query 234 TAAC-AAAAAGT-ATTCATCATCAAGAACAATGGGGAATCATCAAGCTGATAAGAAGTTC 291
| || | ||| | |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 236 TGACTATGGAGTCA-TCATCATCAAGATCAATGGGGAATCATCAAGCTGATAAGAAGTTC 294
Query 292 ACTTGGGTGATCAAGAATTACAACTCTTTGGGTTCCGGTAGTGTTTATTCTGATACATTC 351
||||||||||| ||||||| ||||||||||| ||||| ||| ||||| ||||||||||||
Sbjct 295 ACTTGGGTGATTAAGAATTTCAACTCTTTGGATTCCGATAGAGTTTACTCTGATACATTC 354
Query 352 AAGGCCGGTCGTTGCAAGTGGCGTCTACTCGCCTTTCCCAAGGG-------AA-A-CAAT 402
||||||| |||||||| ||| |||||||||||| ||||||||| || | |||
Sbjct 355 CAGGCCGGGCGTTGCAAATGGGGTCTACTCGCCTATCCCAAGGGATATAATAATATTAAT 414
Query 403 ATCTATGATTATTTCTTTCTGTATATATGTGTTCCTAATTCTGAGTCTTTGCCTTCCGGA 462
||||||||||| |||| ||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 415 ATCTATGATTACTTCTCTCTTTATATATATGTTCCTAATTCTAAGTCTTTGCCTTCCGGA 474
Query 463 TGGAGAAGACGCGCTAAAGTTTCTTTTACTATGGTAAATCAAATTCCGGGAGGACTCTCC 522
|||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 475 TGGAGAAGACACGCTAAATTTTCTTTTACTATGGTAACTCAAATTCCGGGAGAACTCTCC 534
Query 523 CAACAGCGAGAAGCAGTATACTGGTTTGATGAAAAGGACACAACCCA-TGGTTTTGAATC 581
| |||||||||||||| ||| ||||||||| ||||| |||||| ||| |||||| ||||
Sbjct 535 CTACAGCGAGAAGCAGAATATTGGTTTGATCAAAAGAACACAA-CCAGGGGTTTTCAATC 593
Query 582 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTGATAAAGGGTTTCTCGTAAACGGAGAAGT 641
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 594 TATGTTTCTCCTTTCGGAGATTCAAAGCAGTCATAAAGGGTTTCTTGTAAACGGAGAAGT 653
Query 642 CAAGATTGTTGCAGAAGTAGATGTTCTTGAAGTTATTGGTGA-ATTAGATGTACCAGAGG 700
|||||||||||||||||||||||| ||||||||||||||| | | | |||||||| |||
Sbjct 654 CAAGATTGTTGCAGAAGTAGATGTGCTTGAAGTTATTGGT-ATAGTCGATGTACCCGAGA 712
Query 701 AACCAGAAAGAATTGATATCAATGGGTTTCAAGTCCCTGCTTCACAGGTAGAATCTATGA 760
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 713 AACCAGAAAGCTTTGATATCAATGGGTTTCAAGTCCCTGCTTCACAAGTAGATTCTGTGA 772
Query 761 ACAGTCTGTTTGAAAAGTATCGAGGCTTTGCATCAAAAATCTTTCCCAAGAACCAACATC 820
||||||||||| ||||||| | |||||||||||||||| ||| ||||||||||| ||||
Sbjct 773 ACAGTCTGTTTAAAAAGTACCCAGGCTTTGCATCAAAAGTCTGTCCCAAGAACCCACATT 832
Query 821 TG-AGAAAAACATTTC-TGGATGTTGTACTAAGTATGACTGAGATTCTGTGCAAGTTTCC 878
|| || |||||| | | || |||||||||||||| ||| ||||||| ||||||||| ||
Sbjct 833 TGAAG-AAAACA-TACTTGAATGTTGTACTAAGTCTGAATGAGATTATGTGCAAGTCCCC 890
Query 879 GGA-AGAACTTTCCAGTGGTGATCTGGCAGAGGCATATTCTGCACTACGATTTGTTACAA 937
|| | |||| || | ||||||||| || || ||||||||||||||||||| ||| ||||
Sbjct 891 TGATA-AACTCTCTAATGGTGATCTTGCTGATGCATATTCTGCACTACGATATGTGACAA 949
Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACTGAAAGAGACTGGTAAGAGTCGAC 997
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 950 AAGCAGGGTTTAAGTTGGATTGGTTGGAGATGAAACTGAAAGAGACTGGTAAGACTAGGC 1009
Query 998 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGGATGCTT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1010 TGCAAGAAATTGAGGAAGATTTAAAGGACTTGAAGGTGAAGTGTGCAGACATGAATGCTC 1069
Query 1058 TGCTTGATTTCTTACGATGA 1077
||||||| ||||||||||||
Sbjct 1070 TGCTTGAGTTCTTACGATGA 1089
Score = 228 bits (123), Expect = 8e-59
Identities = 197/231 (85%), Gaps = 12/231 (5%)
Strand=Plus/Plus
Query 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCGCTTGGGTGATTAAGAATTTCAACTCTTTG 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 265 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 324
Query 61 GATACC-ACTAGAGTTTACTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTAGT 119
||| || | |||||||||||||||||||||| ||||||| |||||||| ||| ||||| |
Sbjct 325 GATTCCGA-TAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGGGGTCTACT 383
Query 120 CGCTTATCCCAAGAGACGTGATAGGTAT-ACTA-CT-TCTTT-CT-CTCTGTTTCTATGT 174
||| ||||||||| || | ||| ||| | || || | || || |||| ||| ||| |
Sbjct 384 CGCCTATCCCAAGGGATATAATAA-TATTAATATCTATGATTACTTCTCTCTTTATATAT 442
Query 175 --GTTCCTGATTCGGAA-TCTTTGCCTTCCGGATGGAGAAGACGCGCTAAA 222
|||||| |||| || ||||||||||||||||||||||||| |||||||
Sbjct 443 ATGTTCCTAATTCT-AAGTCTTTGCCTTCCGGATGGAGAAGACACGCTAAA 492
Score = 209 bits (113), Expect = 3e-53
Identities = 204/246 (83%), Gaps = 13/246 (5%)
Strand=Plus/Plus
Query 262 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATCAAGAATTACAACTCTTTG 321
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1 ATGGGGAATCATCAAGCTGATAAGAAGTTCACTTGGGTGATTAAGAATTTCAACTCTTTG 60
Query 322 GGTTCCGGTAGTGTTTATTCTGATACATTCAAGGCCGGTCGTTGCAAGTGGCGTCTACTC 381
| ||||| ||| ||||| |||||||||||| ||||||| |||||||| || | |||| ||
Sbjct 61 GATTCCGATAGAGTTTACTCTGATACATTCCAGGCCGGGCGTTGCAAATGCCATCTAGTC 120
Query 382 GCCTT-TCCCAAGGGAAACAAT-A-TCTA-TGAT--TA--T-TT-CT-TTCTGTATATAT 430
|| || ||||||| || || | | || | || || | || || || ||||| |||
Sbjct 121 GC-TTATCCCAAGAGATTTGATGAATGTAGTTATAGTAAATGTTACTCTT-TGTATCTAT 178
Query 431 GTGTTCCTAATTCTGAGTCTTTGCCTTCCGGATGGAGAAGACGCGCTAAAGTTTCTTTTA 490
||||| || ||||| | ||||||| ||||||||||||||||| ||||||| |||| || |
Sbjct 179 GTGTTTCTGATTCTAAATCTTTGCATTCCGGATGGAGAAGACACGCTAAATTTTCCTTGA 238
Query 491 CTATGG 496
||||||
Sbjct 239 CTATGG 244
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 219 bits (118), Expect = 5e-56
Identities = 333/434 (77%), Gaps = 26/434 (6%)
Strand=Plus/Plus
Query 619 GGGTTTCTCGTAAACGGAGAAGTCAAGATTGTTGCAGAAGTAGATGTTCTTGAAGTTATT 678
|||||||| || || |||||||||||| ||||||| || || | ||||||||||||| ||
Sbjct 361 GGGTTTCTGGTGAATGGAGAAGTCAAGGTTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTT 420
Query 679 GGTGAATTAGATGTACCAGAGG-AAC----------CA-GAAAGAATTGATATCAATGGG 726
|| ||| |||||| || || ||| || ||||| || ||| ||||||||
Sbjct 421 GGCAAATCAGATGTGTTAGTGGAAACTTTATTAGTTCAGGAAAGCATCGATGTCAATGGG 480
Query 727 TTTCAAGTCCCTGCTTCACAGGTAGAATCTATGAACAGTCTGTTTGAAAAGTATCGAGGC 786
|||||||| | | |||| |||||||| ||| |||||| ||| ||| |||| || | || |
Sbjct 481 TTTCAAGTTCTTCCTTCTCAGGTAGACTCTGTGAACAATCTCTTTAAAAATTACCCAGAC 540
Query 787 TTTGCATCAAAAATCTTTCCCAAGAACCAACATCTGAGAAAAACATTTC-TGGAT-GTTG 844
||||||||||| ||| || ||||||||| ||||||| |||| | | || || |
Sbjct 541 ATTGCATCAAAATTCTGTCTGGAGAACCAACTTCTGAGAGCAACA-TACATGAATAG-CC 598
Query 845 TACTAAG-TATGACTGAGATTCTGTGCAAGTTTCCGGAAG-AACTTTCCAGTGGTGATCT 902
||||| | | |||||||||||||| || ||| || | || |||| || |||| ||||||
Sbjct 599 TACTATGCT-TGACTGAGATTCTGAGCCAGTCCCCTG-AGAAACTCTCTAGTGTTGATCT 656
Query 903 -GGCAGAGGCATATTCTGCACTACGATT-TGTTACAAAAGCAGGGTTTAAGTTGGATTGG 960
| || | ||| ||| | ||||| || | | |||||||| || |||||||||||||||
Sbjct 657 CGCCA-ATGCACATTGTACACTA-TCTTCTCTGACAAAAGCCGGTTTTAAGTTGGATTGG 714
Query 961 TTGGAGAAGAAACTGAAAGAGACTG-GTAAGAGTCGACTGCAAGAAATTGAGGAAGATTT 1019
||||||||||||||||||||| || || | | ||| ||||| || ||||| |||||||
Sbjct 715 TTGGAGAAGAAACTGAAAGAG-CTTCGTGATACTCGGGTGCAACAACTTGAGCAAGATTT 773
Query 1020 AAAGGACTTGAAGG 1033
|||||||||||||
Sbjct 774 GAAGGACTTGAAGG 787
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 87.9 bits (47), Expect = 1e-16
Identities = 137/177 (77%), Gaps = 19/177 (11%)
Strand=Plus/Plus
Query 616 AAAGGG-TTTCTCGTAAACGGAGAAGTC-AAGATTGTTGCAGAAG-TAGATGTTCTTGAA 672
|||||| ||||| || || |||||| || ||| ||||||| ||| ||||||||||||||
Sbjct 330 AAAGGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGC-CAAGATAGATGTTCTTGAA 387
Query 673 GTTATTGGTGAATTAGATGTACCAGAGGAA-C-----CAG-A-AAG-AA---TTGATATC 720
||| | || |||||||||| || ||||| | ||| | | || | ||| ||
Sbjct 388 GTTGTAGGAAAATTAGATGTTTCACAGGAATCGTTATCAGTAGTGGAAACCGTAGATGTC 447
Query 721 AATGGGTTTCAAGTCCCTGCTTCACAGGTAGAATCTATGAA-CAGTCTGTTTGAAAA 776
|||||||||||||| | | ||||||||||||||||| |||| | || ||||||||||
Sbjct 448 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGC-GTTTGTTTGAAAA 503
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 69.4 bits (37), Expect = 5e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974
|||||||||||||||||||||||||||||||||||||
Sbjct 683 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 719
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 938 AAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974
|||||||||||||||||||||||||||| ||||||||
Sbjct 707 AAGCAGGGTTTAAGTTGGATTGGTTGGAAAAGAAACT 743
> Ahg898776 jgi|Araly1|898776|Al_scaffold_0005_2742
Length=954
Score = 62.1 bits (33), Expect = 8e-09
Identities = 38/40 (95%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 936 AAAA-GCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 974
|||| | |||||||||||||||||||||||||||||||||
Sbjct 746 AAAATGTAGGGTTTAAGTTGGATTGGTTGGAGAAGAAACT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5