BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27050.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936430 jgi|Araly1|936430|scaffold_500621.1 981 0.0
> Ahg936430 jgi|Araly1|936430|scaffold_500621.1
Length=589
Score = 981 bits (531), Expect = 0.0
Identities = 571/590 (97%), Gaps = 3/590 (1%)
Strand=Plus/Plus
Query 45 GAG-ttttttttttGGGGCAATGGCGTCGTCGCTGCAAAGCTCGGGGATGTTGACGAAAG 103
||| || |||||||||||||||||||| |||||| |||||||| ||||||||||||||||
Sbjct 1 GAGATTGTTTTTTTGGGGCAATGGCGTTGTCGCTACAAAGCTCTGGGATGTTGACGAAAG 60
Query 104 AGCAAATGGTTTATCTCTTTGATCGATTCGATTACTTGACTTCACAATCTGATGTGAAGA 163
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 61 AGCAAATGGTTTATCTATTTGATAGATTCGATTACTTGACTTCACAGTCTGATGTGAAGA 120
Query 164 AACGAATCTCCGACGCTGTGGATGACAAACAGGAAGCTGTAGCGGTAACAACTGCTATTC 223
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 121 AACGAATCTCCGACGCTGTGGAGGATAAACAGGAAGCTGTAGCGGTAACAACTGCGATTC 180
Query 224 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAGGAGATATTCTTGGAGATGGGGATTGACCCGGGATTTGGTATTGGCTGCTTGGGAA 240
Query 284 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCTGAACTCTGCATACGAAAACGATAAAGAGTTGATGATTGGTTTCTACAAGTTTCTCG 300
Query 344 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACAAGATGGATTTGAACAGAAAA 403
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 CAAAGGAGGAGATGGCATGTGAAGAAGCTGAGCTTGGACCAGATGGATTTGAACAGAAAA 360
Query 404 TGAAAGCACTACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 463
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAAAGCACAACAACAATTACAAGAACAGCAACTAGAGATGCTTAAGTATATGCGTAAAT 420
Query 464 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTCTGGATGATCAATCTGCTATCCTTCAAAAGCTTCAGAAGCAATTAGAAAATGCGG 480
Query 524 GTTTTGAGCCGGAGGCGTCTCTTTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 583
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTTTGAGCCGGAGGCGTCGCTGTTGTCAGGAGAGGAAATGGAGGAAGCTGGAAGAAGAA 540
Query 584 GAGTTTCACCTGTTTTTGGAAGCAGATAGCTTTTC-AGTTCTCACAAGCT 632
||||||| |||||||||||||||||||||||| || | ||||||||||||
Sbjct 541 GAGTTTCGCCTGTTTTTGGAAGCAGATAGCTTCTCGA-TTCTCACAAGCT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5