BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27060.1
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484491 jgi|Araly1|484491|fgenesh2_kg.5__483__AT3G27060.1 1827 0.0
Ahg947638 jgi|Araly1|947638|scaffold_703867.1 933 0.0
> Ahg484491 jgi|Araly1|484491|fgenesh2_kg.5__483__AT3G27060.1
Length=1267
Score = 1827 bits (989), Expect = 0.0
Identities = 1166/1248 (93%), Gaps = 26/1248 (2%)
Strand=Plus/Plus
Query 1 CTCAACAAGCTTTTTTCTTTGGATAAAAATTC-CCGAACAAGCTTCTCG-AAACCAAACA 58
|||||||||||||||||||| ||||||||||| || ||||||||||||| ||||| ||||
Sbjct 1 CTCAACAAGCTTTTTTCTTT-GATAAAAATTCTCC-AACAAGCTTCTCGAAAACC-AACA 57
Query 59 AATTTCAAACATTTTTAATA-TTTCCCTCCTC-TATTTTCCCTCTTCACGTCAAAAATTC 116
|||||||||| ||||||||| ||||||||||| || ||||| ||| | || |||||||||
Sbjct 58 AATTTCAAACCTTTTTAATATTTTCCCTCCTCTTA-TTTCCGTCTCCTCGACAAAAATTC 116
Query 117 AAAAA-CCCC-AAAACCCTATAATCTCCTA-TATAAATATTCAGCCCTAGatcttataat 173
||||| |||| |||||||| |||||||| | |||||||| ||| |||||||||| |||||
Sbjct 117 AAAAACCCCCAAAAACCCTCTAATCTCC-ATTATAAATACTCATCCCTAGATCTCATAAT 175
Query 174 tcatcaatcaaa-caatctcttcaatcaaatctcttcttcaatcaaatcttcaaatccct 232
|||||||||||| | |||||||||||| | | || ||||| || || |||||| ||
Sbjct 176 TCATCAATCAAATC-ATCTCTTCAATC-ACT-TC-TCTTC-TTC-AA---TCAAAT--CT 224
Query 233 tcaaagatgccttcaatGCCAGAAGAGCCGCTCCTAACACCAACCCCAGACAGATTCTGT 292
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 225 TCAAAGATGCCTTCAATGCCAGAAGAGCCGCTTCTAACACCAACCCCAGACAGATTCTGT 284
Query 293 ATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTC 344
Query 353 TGGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAGTCTCAAC 412
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 345 TGGACCGCTGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAACAATCTCAAC 404
Query 413 GACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCTGACGGAATC 472
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 405 GACGGTGAACGTCACTTCATCAAACATGTCCTCGCTTTCTTCGCCGCATCCGACGGAATC 464
Query 473 GTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGTGCT 532
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 465 GTATTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCT 524
Query 533 TTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTTCTC 592
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 525 TTCTACGGTTTCCAGATCGCGATTGAAAACATCCATTCGGAGATGTATAGTCTCCTTCTC 584
Query 593 GATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACAATC 652
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 585 GATACGTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATCGAAACGATT 644
Query 653 CCTTGCGTCGCCAAGAAAGCTCAATGGGCTATGAAATGGATCGACGGTTCTCAGACTTTC 712
||||||||||| ||||||||||| ||||| |||||||||||||| || ||||| ||||||
Sbjct 645 CCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGATGGATCTCAAACTTTC 704
Query 713 GCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTTTGT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GCCGAACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCTTTTGT 764
Query 773 TCAATCTTCTGGCTGAAGAAACGAGGACTCATGCCTGGATTAACATTCTCAAACGAATTG 832
|||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 765 TCAATCTTCTGGCTAAAGAAACGAGGACTCATGCCTGGACTAACATTTTCCAACGAATTG 824
Query 833 ATCTCACGTGACGAAGGTTTACACTGTGATTTCGCTTGTCTACTCTACACGCTACTCAAA 892
||||| || |||||||| ||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 825 ATCTCTCGAGACGAAGGACTACACTGCGATTTCGCTTGTCTTCTCTACACGCTTCTCAAA 884
Query 893 ACAAAGCTTAGCGAAGAACGCGTGAAATCAATCGTCTGCGACGCGGTCGAAATCGAGAGA 952
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 885 ACGAAGCTTAGTGAAGAACGCGTGAAATCAATCGTTTGCGACGCGGTCGAAATCGAGAGA 944
Query 953 GAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGT 1004
Query 1013 CAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTAC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTAC 1064
Query 1073 GGTGTTACTAATCCGTTCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACGAATTTC 1132
|||| |||||||||||| ||||||||||||||||| || |||||||||||||| || |||
Sbjct 1065 GGTGCTACTAATCCGTTTGATTGGATGGAACTTATCTCGCTTCAAGGGAAAACTAACTTC 1124
Query 1133 TTCGAGAAACGTGTTGGTGATTACCA-AAAGGCTTCCGTTATGTCTAGCGTTAATGGTAA 1191
|| |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 1125 TTTGAGAAACGTGTTGGTGATTATCAGAAAG-CTTCCGTTATGTCTAGCGTTAATGGTAA 1183
Query 1192 CGGCGCGTTTGATAACCATGTCTTCTCTCTCGACGAAGATTTTTAAAG 1239
||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1184 CGGTGCGTTTGATAATCATGTCTTTTCTCTCGACGAAGATTTTTAAAG 1231
> Ahg947638 jgi|Araly1|947638|scaffold_703867.1
Length=1042
Score = 933 bits (505), Expect = 0.0
Identities = 857/1023 (84%), Gaps = 39/1023 (4%)
Strand=Plus/Plus
Query 235 aaagatgccttcaatGCCAGAAGAGCCGCTCCTAACACCAACCCCAGA-CAGATTCTGTA 293
||| |||||||| |||||||| || || ||||||||||||| ||||| | |||||||||
Sbjct 17 AAAAATGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATC-GATTCTGTA 75
Query 294 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTCT 353
|||||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 76 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCT 135
Query 354 GGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAA--CAGTCT-CA 410
|||||||||||||||| ||||| || |||||||| |||||||||||||| || | | ||
Sbjct 136 GGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCCA 195
Query 411 ACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCTGACGGAA 470
||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 196 ACGAC---GAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAA 252
Query 471 TCGTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGTG 530
|||| || ||||||||| | | || ||||||||||||||||| ||||| || || ||||
Sbjct 253 TCGTTCTGGAGAATCTCTCAACCCGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTG 312
Query 531 CTTTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTTC 590
| |||||||||||||| ||||| || || || || || || |||||||||||||||||||
Sbjct 313 CCTTCTACGGTTTCCAAATCGCAATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTC 372
Query 591 TCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACAA 650
|||| ||||| |||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 373 TCGACACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAA 432
Query 651 TCCCTTGCGTCGCC-AAGAAAGCTCAATGGGCTATGAAATGGATCGACGGTTCTCAGA-C 708
| ||||| || | | || ||||| |||||||||||||||||||| |||| ||||| | |
Sbjct 433 TTCCTTGTGT-GACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGC 491
Query 709 TTTCGCCGA-ACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCT 767
|| ||| || | ||||| | ||||| |||||||| |||||||| |||||||| || ||||
Sbjct 492 TT-CGCTGAGA-GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCT 549
Query 768 TTTGTTCAATCTTCTGGCTGAAGAAACGAGGACTCATGCCTGGATTAACATTCTCAAACG 827
||||||| || |||||| ||||||||||||| | ||||||||| | |||||||| ||||
Sbjct 550 TTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACG 609
Query 828 AATTGATCTC-ACGTGACGAAGGT-TTACACTGTGATTTCGCTTGTCT-ACTCTACACG- 883
||||||| || | | ||||||||| || |||||||||||||||||| | | |||| | |
Sbjct 610 AATTGATTTCGA-GAGACGAAGGTCTT-CACTGTGATTTCGCTTGTTTGA-TCTATA-GT 665
Query 884 CTACTCAAAACAAAGCTT-AGCGAAGAACGCGTGAAATCAATCGTCTGCGACGCGGTCGA 942
|| || | ||| |||||| | |||||||| ||||||| || || || || ||||| ||
Sbjct 666 CTTCTTAGAACTAAGCTTGAT-GAAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGA 724
Query 943 AATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGA 1002
||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||
Sbjct 725 GATCGAGAGAGAGTTTGTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGA 784
Query 1003 TTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTT-TTGGGTGCGCTTGGGTACG 1061
||||||||||||||| |||||||||||||| |||||| || ||| ||||||||||| |
Sbjct 785 TTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGG-TTATTGACTGCGCTTGGGTGTG 843
Query 1062 GGAAGGTGTACGGTGTTACTAATCCGTTCGATTGGATGGAACTT-ATTTCACTTCAAGGG 1120
| |||||||| ||||| | |||||| || |||||||||||| || ||||| ||||||||
Sbjct 844 GTAAGGTGTATGGTGTGAGTAATCCTTTTGATTGGATGGAA-TTGATTTCGCTTCAAGGT 902
Query 1121 AAAACGAA-TTTCTTCGAGAA-ACGTGTTGGTGATTACCA-AAAGGCTTCCGTTATGTCT 1177
||||| || ||| || ||||| | | |||||||| || || |||| |||| |||||||||
Sbjct 903 AAAACTAACTTTTTT-GAGAAGA-GAGTTGGTGAGTATCAGAAAG-CTTCTGTTATGTCT 959
Query 1178 AGCGTTAATGGTAACGGC-GCGTTTGAT-A--ACCATGTCTTCTCTCTCGACGAAGATTT 1233
|| ||| |||| |||| | |||||| || | | ||||||||| || ||||| |||||
Sbjct 960 AGTGTTCATGGAAACG-CTGCGTTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTT 1018
Query 1234 TTA 1236
|||
Sbjct 1019 TTA 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50207881689
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5