BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27080.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484492 jgi|Araly1|484492|fgenesh2_kg.5__484__AT3G27080.1 953 0.0
> Ahg484492 jgi|Araly1|484492|fgenesh2_kg.5__484__AT3G27080.1
Length=645
Score = 953 bits (516), Expect = 0.0
Identities = 606/649 (93%), Gaps = 7/649 (1%)
Strand=Plus/Plus
Query 34 AAGTTTTGTACGAAAGAAGAAAAGCTTTGAGAAGCCATGGATACGGAAACTGAGTTCGAT 93
|||||||||||| |||||| |||| ||||||||||||||||||||||| | |||||||||
Sbjct 1 AAGTTTTGTACGGAAGAAG-AAAGTTTTGAGAAGCCATGGATACGGAAGCCGAGTTCGAT 59
Query 94 AGGATACTATTGTTCGAACAAATTCGTCAAGACGCCGAAAATACCTACAAGTCAAATCCT 153
||| ||||||||||||||||||||||| ||||||| ||| | |||||||||| ||| |||
Sbjct 60 AGGTTACTATTGTTCGAACAAATTCGTAAAGACGCAGAAGAGACCTACAAGTTAAACCCT 119
Query 154 TTAGATGCCGATAATCTGACTAGATGGGGAGGAGT-TTTACTCGAGTTATCTCAGTTTCA 212
|||||||||||| |||||||||||||||||||| | |||||| |||||| ||||||||||
Sbjct 120 TTAGATGCCGATGATCTGACTAGATGGGGAGGA-TCTTTACTTGAGTTAGCTCAGTTTCA 178
Query 213 TAGCATCTCAGATGCAAAGCAAATGATTCAAGAGGCCATCACAAAGTTTGAAGAGGCATT 272
||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 179 TAGCATCTCAGATTCAAAACAAATGATTCAAGAGGCCATCACAAAGTTCGAAGAAGCATT 238
Query 273 GTTGATTGACCCAAAGAAAGATGAAGCGGTTTGGTGTATTGGGAATGCATACACTTCATT 332
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 GTTGATTGACCCGAAGAAAGATGAAGCGGTTTGGTGTATCGGGAATGCATACACTTCATT 298
Query 333 TGCGTTTCTGACTCCTGACGAGACTGAAGCTAAACATAACTTTGACTTAGCTACTCAGTT 392
||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 299 TGCGTTTTTGACTCCCGACGAGACTGAAGCTAAACATAATTTTGACTTGGCTACTCAGTT 358
Query 393 CTTTCAACAAGCTGTGGATGAGCAACCAGATAATACA-CACTACCTGAAATCACTCGAAA 451
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 359 CTTTCAACAAGCTGTGAATGAGCAACCAGATAAT-CAGCACTACCTGAAATCACTCGAAA 417
Query 452 TGACGGCCAAGGCTCCACAGCTGCACGCAGAAGCTT-ACAAACAAGGCTTAGGCTCACAA 510
||||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||
Sbjct 418 TGACGGCCAAGGCTCCACAACTGCACGCAG-AGGTTCACAAACATGGCTTAGGCTCACAA 476
Query 511 CCAATGGGTCGCGTTGAAGCTCCAGCACCGCCGAGCTCAAAGGCAGTGAAGAATAAGAAA 570
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCAATGGGTGGCGTTGAACCTTCAGCACCGCCGAGCTCAAAGGCAGTGAAGAATAAGAAA 536
Query 571 AGTAGTGATGCCAAGTATGATGCTATGGGTTGGGTGATTCTAGCCATTGGTGTTGTTGCT 630
||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 AGTAGCGACGCGAAGTATGATGCTATGGGTTGGGTGATTCTAGCCATTGGTGTTGTTACT 596
Query 631 TGGATCAGTTTCGCGAAAGCTAATGTGCCTGTCTCTCCTCCTCGTTAAG 679
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 597 TGGATCAGTTTCGCGAAAGCTAATGTGCCTGTGTCTCCTCCTCGTTAAG 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5