BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27100.2

Length=745
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg347077 jgi|Araly1|347077|fgenesh1_pg.C_scaffold_5000469           436    8e-122


> Ahg347077 jgi|Araly1|347077|fgenesh1_pg.C_scaffold_5000469
Length=366

 Score =  436 bits (236),  Expect = 8e-122
 Identities = 261/273 (96%), Gaps = 2/273 (1%)
 Strand=Plus/Plus

Query  105  GAAACATTCGGTGAATCGGCCTCCGACACCAGATGAAGACGATGTGGCGG-ATGGTTTCG  163
            |||||| ||||||||||||||||||||||| |||||||||||||  |||| ||  |||||
Sbjct  21   GAAACACTCGGTGAATCGGCCTCCGACACCTGATGAAGACGATGCAGCGGAAT-ATTTCG  79

Query  164  AGAAAGACAAGGTCACGCTTCGAGAAATCATCAACGTCAAGTTGGTGGAGAGTGGAGAGA  223
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  80   AGAAAGACGAGGTCACGCTTCGAGAAATCATCAACGTCAAGTTGGTGGAGAGTGGTGAGA  139

Query  224  AGGAGAATCTAATGGAGCTTGTGAGAGATAGATTGGTGGAGTGTGGTTGGAAAGATGAGA  283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  140  AGGAGAATCTAATGGAGCTTGTGAGAGATAGATTGGTGGAGTGTGGTTGGAAAGATGAGA  199

Query  284  TGAGAATTGCTTGCAGGGAGCATGTAAAGAAGAAAGGGAGAAAAGATGTTACAGTCGATG  343
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  200  TGAGAATTGCTTGCAGGGAGCATGTAAAGAAGAAAGGAAGAAAAGATGTTACAGTCGATG  259

Query  344  AACTGATCCGAGTGATCACTCCTAAAGGCAGAG  376
            ||||||||||||||||||| || ||||||||||
Sbjct  260  AACTGATCCGAGTGATCACACCAAAAGGCAGAG  292


 Score =  124 bits (67),  Expect = 7e-28
 Identities = 73/76 (96%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  472  AGCTTCAGTACCAGATTCTGTGAAGGCAGAGCTGTTGAACAGAATTCAAAACTTCATTGT  531
            |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  291  AGCTTCGGTACCAGATTCTGTGAAGGCAGAGCTGTTGAACCGAATTCAAAACTTCATTGT  350

Query  532  ATCAGCTGCTCTTTGA  547
            ||||||| ||||||||
Sbjct  351  ATCAGCTTCTCTTTGA  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27448500240


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5