BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27110.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936437 jgi|Araly1|936437|scaffold_500628.1 1701 0.0
> Ahg936437 jgi|Araly1|936437|scaffold_500628.1
Length=1076
Score = 1701 bits (921), Expect = 0.0
Identities = 1023/1074 (95%), Gaps = 0/1074 (0%)
Strand=Plus/Plus
Query 91 CTTACGCACCTCTCTTCTCTCATGGCGGTTTCAGTCTCAGCTCCGGTTTTGTCCCTCTGT 150
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1 CTTACGCACCTCTCTTCTCTCATGGCGGTATCAGTCTCATCTCCGGTTTTGTCCCTCTGT 60
Query 151 TACAATCAGAGCGGCGAATTGTCTCGTAGTTTGGGATATAGACTACCGAAGAAAGTGGGA 210
|||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 61 TACAATCAGAGCGGTGAATTGTCTAGTCGTTTGGGATATAGACTACCGAAGAAAGTGGGA 120
Query 211 TTTAGCTCTGGTCGTCGTTCAGTGAGTTATATCGGTTTCGGTGCGGAGAAAGTTGGAAGA 270
||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TTTAGCTCTAGTCGCCGTTCAGTGAGTTATATCGGTTTCGGTACGGAGAAAGTTGGAAGA 180
Query 271 TTTAGGGTTAGGGTTCCGATTTGCAGAGCTGTACCTCCTCTCTTGTTCAAAGATCTCGAT 330
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 181 TTTAGGGTTAGGGTTCCGATTTGCAGAGCTGTGCCTCCTCTGTTGTTCAAAGATCTTGAT 240
Query 331 GCTGATGATTTCCGACATCCTTTTGATAAGCAGAACACGTTGTTACTAAGGGCTATACCG 390
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 241 GCTGATGATTTCCGTCATCCTTTGGATAAGCAGAACACTTTGTTACTAAGGGCGATACCG 300
Query 391 GGGTTGAACGAATTCGGCAAAGCTCTTTTAGGGTCAATGACGGAGCAGATTATGCTTCTT 450
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGGTTGAACGAATTCGGCAAAGCTCTTTTAGGGTCAATGACGGAACAGATTATGCTTCTT 360
Query 451 GAGAACATTGGGACTTCTGTTCTTGTTTCCAAGAATCAGCTCTCTGATCTTCACGGTTTG 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAACATTGGGACTTCTGTTCTTGTTTCCAAGAATCAGCTCTCTGATCTTCACGGTTTG 420
Query 511 TTGGTTGAGGCTGCTGAGATTTTGAATATAGAGGCTCCTGATCTATATGTGCGACAGAGT 570
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 421 TTGGTTGAGGCTGCTGAGATTTTGAGCATAGAGGCTCCTGATCTATATGTGCGACAAAGT 480
Query 571 CCTGTTCCTAATGCGTATACGCTGGCAATAAGCGGTAAGAAGCCGTTTATTGTTGTCCAC 630
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 481 CCTGTTCCTAATGCGTATACACTGGCAATAAGCGGTAAAAAGCCTTTTATTGTTGTTCAT 540
Query 631 ACCAGCTTGATCGAGCTTCTTACTAGCGCGGAGCTACAGGCTGTCTTAGCCCATGAACTA 690
||||||||||| |||||||||||| |||| ||||||||||||||||| || |||||||||
Sbjct 541 ACCAGCTTGATTGAGCTTCTTACTCGCGCTGAGCTACAGGCTGTCTTGGCGCATGAACTA 600
Query 691 GGCCATCTGAAGTGTGATCACGGCGTGTGGCTCACATTTGCAAATATTCTTACTCTTGGG 750
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 601 GGCCATCTGAAGTGTGATCATGGCGTGTGGCTCACATTTGCAAACATTCTTACTCTTGGT 660
Query 751 GCTTATACAGTTCCTGCTTTTGGGCAAATGATAGCTCGAACCTTGGAAGAACAGTTACTT 810
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 661 GCTTATACAGTTCCTGCTTTTGGGCAAATGATAGCTCGGACTTTGGAAGAACAATTACTT 720
Query 811 CGTTGGCTACGTTCAGCAGAGCTGACTTGTGATCGCGCAGCACTACTCGTCGCCCAAGAT 870
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 CGTTGGCTGCGTTCAGCAGAGCTGACTTGTGATCGCGCAGCACTTCTGGTCGCCCAAGAT 780
Query 871 CCAAAGGTTGTTGTATCTGTTCTGATGAAATTAGCCGGAGGATGTCCATCAATCGCTGAT 930
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 CCAAAGGTTGTTGTATCCGTTCTGATGAAATTAGCCGGAGGATGTCCATCAATTGCTGAT 840
Query 931 CAGCTAAATGTTGACGCATTTCTAGAACAAGCCCGTTCATATGACAAAGCTTCTTCAAGC 990
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 841 CAGCTAAATGTTGACGCATTTCTAGAACAAGCTCGATCATATGACAAAGCTTCTTCAAGC 900
Query 991 CCCTTGGGATGGTACATAAGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCGGTT 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 CCCTTGGGATGGTACATAAGAAATGCTCAGACTAGTCAACTTTCGCATCCATTGCCAGTT 960
Query 1051 CTTCGTGCACGTGAGATTGATGAGTGGTCCAGGAGTCTCGAGTACAAAAGTCTCCTGAAA 1110
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 961 CTTCGTGCACGTGAGATTGATGAATGGTCCAGGAGTCTTGAGTACAGAAGTCTCCTGAAA 1020
Query 1111 CGGGCAAATCGAAAAAGCACAGTACAGAAGGTTTAGTGACGTTGTTAAAGATTT 1164
||||||||||||| |||||| || ||||||||||||||| ||||||||| ||||
Sbjct 1021 CGGGCAAATCGAATAAGCACGGTGCAGAAGGTTTAGTGATGTTGTTAAATATTT 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5