BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27130.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347079 jgi|Araly1|347079|fgenesh1_pg.C_scaffold_5000471 1511 0.0
> Ahg347079 jgi|Araly1|347079|fgenesh1_pg.C_scaffold_5000471
Length=1983
Score = 1511 bits (818), Expect = 0.0
Identities = 939/998 (94%), Gaps = 6/998 (1%)
Strand=Plus/Plus
Query 91 ATGGCGGGAAAGCGTTCGTCGCCGTTTTCTTCTCCGTTACTGAGACCACCACCGGAGTTT 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGGGAAAGCGTTCGTCGCCGTTTTCTTCTCCGTTACTGAGACCACCACCGGAGCTT 60
Query 151 CTGAATGTGAAGGAGGAAGGAGAAACGGAGACGCCGTGTTGGAGAAAGGAAGTGGATGAG 210
||||||||||||||||||||||||||||||||| |||| ||||||||||| || || |||
Sbjct 61 CTGAATGTGAAGGAGGAAGGAGAAACGGAGACGTCGTGCTGGAGAAAGGAGGTAGACGAG 120
Query 211 AACTTGAAGCGTCTCCAATCGCTGCTCTTCGGCGCCGACAAATTCCTGGAGAAATCTGAT 270
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 121 AACTTGAAGCGTCTCCAATCGCTGCTCTTCGGCGCCGACCAATTCCTTGAGAAATCTGAT 180
Query 271 TTCTCTTCTGCTCAGATCCTTGGGCTTCGTCTTCTAGGTTTCCTCGATTCTCGTTCTGTC 330
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 TTCTCCTCCGCTCAGATCCTTGGGCTTCGTCTTCTAGGTTTCCTCGATTCTCGCTCTGTT 240
Query 331 ACTGACGCCGATCGTGATTTCATTGGTCCCATTCGTCGTGAAGTTGCCTCTAAGATTGAT 390
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 241 ACTGACGCCGATCGTGATTTCATTGGTCCCATTCGCCGTGAAGTTGCTTCTAAGGTCGAT 300
Query 391 TTAGCTTTGGAAGGCCTCGTTTCAGATTCGGATCGGAAGGCGTTTGAGCTTGCAAATACA 450
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TTAGCTTTGGAAGGACTCGTTTCAGATTCGGATCGGAAAGCGTTTGAGCTTGCAAATACA 360
Query 451 GCTCCAGGGGCAATTTTTGGCAGCAAAGGTGGATTTGATGTGGAAAAGATTAAGCAGTCT 510
| |||||| | |||||||||||| || |||||||||||||||||||||||||||
Sbjct 361 GTTCCAGGACCTATTTTTGGCAGC-AA-----ATTTGATGTGGAAAAGATTAAGCAGTCA 414
Query 511 AAGTACTTTGGTTTTCATGTCAGTCAATCTAACGGAAAGGGTGTTAAAGAGATGGAAGAA 570
|| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 415 AAACACTTTAGTTTTCATGTCAGTCAATCTAATGGAAAGGGTGTTAAGGAGATGGAAGAG 474
Query 571 CGGCATGATACGGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGCCAAACTG 630
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGACAGGATACTGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGCCAAACTG 534
Query 631 ACATCATTGTATGGAAACAGTATTGGTAAACCAGATAATCAGCGCAAAACTTCAGTGAAC 690
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 535 ACATCATTGTATGGAAACAGCATTGGTAAACCAGATAATCAGCGAAAAACTTCTGTGAAC 594
Query 691 AATCAAGACCGTGCCTCTGATGAATGTGTCATTGTTGAGAGAAGTCATGGATTTGGTTTT 750
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 595 AATCAAGACCGTGCCTCTGATGAATGTGTCATTGTCGAGAGAAGTCATGGATTTGGTTTT 654
Query 751 GGAACAAAGCGACCTCATGCAGAAACCAGTAGCCTTGCAAATGATGGGGAAGTAAAGGAA 810
|||||||||||| |||||||||||||||| || || ||||||||||||||| |||||| |
Sbjct 655 GGAACAAAGCGAACTCATGCAGAAACCAGCAGTCTCGCAAATGATGGGGAAATAAAGGCA 714
Query 811 GATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGTAAGACAA 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGTAAGACAA 774
Query 871 AAACGAGGATCAACTGAGTCACCAAGTTCATGTCTTTCTCCACAGAGTGACAAAAATGCT 930
| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 775 AGACGAGGATCAACCGAGTCACCAAGTTCTTGTCTTTCTCCACAGAGTGAAAAAAATGCT 834
Query 931 TTAGGTAGGGGCTATGGTTCAAGGTCGGGTGGATTAAGACGTGGATACCGTAGTAATTTT 990
|| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 835 TTGGGTAGGGGCTATGGTTCAAGATCGGGTGGATTAAGACGTGGATACCGTGGTAATTTT 894
Query 991 GTCCCTCCTGTTAAAACTAATGGGAATAATGTTGGAAACTTGACGTCTCGTATTGGTGGA 1050
||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 895 GTCCCTCCTGTTAAATCTAATGGGAATAATGCTGGAAACTTGACATCTCGTATTGGTGGA 954
Query 1051 AAGACTGACGATGCACTGGATGACTCAACCAGAACATG 1088
|||| |||||||||||||||||||||||||||||||||
Sbjct 955 AAGATTGACGATGCACTGGATGACTCAACCAGAACATG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5