BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27150.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484498 jgi|Araly1|484498|fgenesh2_kg.5__490__AT3G27150.1 2098 0.0
> Ahg484498 jgi|Araly1|484498|fgenesh2_kg.5__490__AT3G27150.1
Length=1523
Score = 2098 bits (1136), Expect = 0.0
Identities = 1403/1531 (92%), Gaps = 22/1531 (1%)
Strand=Plus/Plus
Query 70 AGAGGGAATGTCAAAAGTGCACTAGGCCAGGATTTTACATAGAGATGTTGACGCTAGGAG 129
||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||
Sbjct 1 AGAGGGAATGTCAAAAGTGTACTAGGCCGGGATTTTACAAAGACATGTTGACGCTAGGAG 60
Query 130 AAGATCAAATC-GGTAGAATTGGGGCAAGCTCTAG-CTGGTCTAGGTCGAAGAAGCTTCG 187
||||||| | | ||||||||| |||||||||| || || ||||||| |||||||||||||
Sbjct 61 AAGATCATA-CGGGTAGAATTCGGGCAAGCTCGAGCCT-GTCTAGGCCGAAGAAGCTTCG 118
Query 188 GGTTCATCGCTACGAGATTCCTGATCTAAACGTAGAACCTAGTTTGGATTGGGATGGGGA 247
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGTTCGTGGCTACGAGATTCCTGATCTAAACGTAGAACCTAGTTTGGATTGGGATGGGGA 178
Query 248 AGAAACAGGGGAGGCCACTAAGGCTCTGAGCAGTACATGTTTGAAACCTAAGGATGCAGA 307
||||||||||||||||||| || ||||||||||||| ||||||| | || ||||||||||
Sbjct 179 AGAAACAGGGGAGGCCACTCAGACTCTGAGCAGTACCTGTTTGAGATCTCAGGATGCAGA 238
Query 308 TTATTGTTTACTAAATGTTCCTCAGCTCGTATACGAGTTAGAGGTCGAGATACTCGCACG 367
|||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct 239 TTATTGTTTACTAAATGTTCCTCAGCTCGTTTACGAGCTAGAGGTTGAGATACTTGCACG 298
Query 368 CGTGCCGCGTTTCGAGTATTGGAAACTAAAGTTACTTAATAAGGGGTTTTCGCGTTTGCT 427
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 299 CGTGCCGCGTTTCGAGTATTGGAAACTAAAGTTACTTAATAAAGGGTTTTCGAGTTTGCT 358
Query 428 AAAGAGTGATGAGATTTTCAAGGTGAGGCGCGAGCGCGGTGTAGTTGAACCGTCTGTCTT 487
|||||| ||||| |||||||||||||| || || || |||||||||||||||||||||||
Sbjct 359 AAAGAGCGATGAAATTTTCAAGGTGAGACGAGAACGGGGTGTAGTTGAACCGTCTGTCTT 418
Query 488 TATGTTGTCGAGTGGTGATACGTGTTGGACGATGTTTGACAAGGGCTTTGGGAACTGCCA 547
|||| ||||||| ||||||| | |||||||||||||||| |||||||||| ||| | ||
Sbjct 419 TATGCTGTCGAGCGGTGATATGCGTTGGACGATGTTTGATAAGGGCTTTGAGAATTTTCA 478
Query 548 GAAGCTTCCGGAACTTCCTTCTGACATATGCTTCCTCCATGGAGATAAAGAATCGCTTTG 607
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 GAAGCTTCCGGAACTTCCTTCTGACATATGCTTCCTCCATGGAGATAAAGAGTCGCTTTG 538
Query 608 CGCTGGAACTCATTTGATTGTCACTGGGAAAGAGGAGAAGAGCATTGCGCTATGGCGGTA 667
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 539 CGCAGGAACTCATTTGATTGTCACTGGGAAAGAAGAGAAGAGCATAGCCCTATGGCGGTA 598
Query 668 CGAGTTGGAGACGAGCAAATGGTTCAAAGGTCCCGCGATGATCACACCGCGAATCTTGTT 727
| | ||||||| || ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 599 TGTGCTGGAGACAAGTAAATGGTTCAAAGGTCCTGCAATGATCACACCACGAATCTTGTT 658
Query 728 TGCTTCTGCTACTTGTGGGACTGTTGTGTTTGTAGCTGGTGGGTTGAAAATTGAAGGAAA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCTTCTGCTACTTGTGGGACTGTTGTGTTTGTAGCTGGTGGGTTGAAAATTGAAGGAAA 718
Query 788 CGGGACCATGGAAGTTGTGGACAGCGTTGAGAAGTATGACTCTAAGACCAAAACGTGGAC 847
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 CGGGACCATGGAAGTTGTGGACAGCGTCGAGAAGTATGACTCTAAGACCAAAACGTGGAC 778
Query 848 GCTTCTACGCGGAATGCATAAGCGGCGGAAATTCTGCTCTGGGTGTTACTTGCGTGGCAA 907
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 779 GCTTCTCCGCGGAATGCATAAGCGGCGGAAGTTCTGCTCCGGGTGTTACTTGCGTGGCAG 838
Query 908 GTTTTATGTTCTCGGAGGCCGGGATGAGAATGGTCAAAACCTAACTTGCGGAGAAAGTTA 967
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTTTTACGTACTTGGAGGCCGGGATGAGAATGGTCAAAACCTAACTTGCGGAGAAAGTTA 898
Query 968 CGACGAGAAGAC-GAACACATGGGAACTCATACCGGACATTCTCAAAGACATGTCTTTCT 1026
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 CGACGAGAAGACAGA-CACATGGGAACTAATACCGGACATTCTCAAAGACATGTCTTTCT 957
Query 1027 CTTCTGTCCAATCTCCACCGCTCATCGCAGTGGTTGGGGATGATCTTTACTCATTGGAAA 1086
|||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||||
Sbjct 958 CTTCTGTCCAATCTCCGCCCCTCATTGCGGTGGTTGGGGATGATCTTTACTCGTTGGAAA 1017
Query 1087 CCTCGGCGAACGAGCTCCGCGTTTATGATGCAAATGCAAACTCTTGGAAGAAGCTTGGAG 1146
||||||| |||||||| ||||||||||||||||| |||||| | ||||||||||||||||
Sbjct 1018 CCTCGGCAAACGAGCTTCGCGTTTATGATGCAAAGGCAAACGCCTGGAAGAAGCTTGGAG 1077
Query 1147 ATGTGCCCGTGAGGGCTAAGTCTAATGGAGGATGGGGCGTTGCGTTTAAGTCACTTGGAG 1206
|||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1078 ATGTTCCCGTGAGAGCTAAGTCTAATGGAGGATGGGGAGTAGCGTTTAAGTCGCTTGGAG 1137
Query 1207 ATAAGTTGCTTGTGATTGGAGCATCAGCCGGTCCGTCTAGGGCCGAGACAATGTCGGTTT 1266
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1138 ACAAGCTGCTTGTGATTGGAGCATCAGCGGGTCCGTCTAGGGCCGAGACAATGTCGGTTT 1197
Query 1267 ACACGAGCCGTCCATCCGCAAATCCTGCGAACAAGCTGTATTGGGAGGAGTCTAAACGTT 1326
||| | |||||||||| || ||||| |||||||||||||||||||||||||||||| |
Sbjct 1198 ACATGTGCCGTCCATCTGCTGTTCCTGAGAACAAGCTGTATTGGGAGGAGTCTAAACGCT 1257
Query 1327 GCTGTGGCGTTAGGTTCAATCATTTTATCCTAAACTGTTGTGTAATGATTGCGTAAGGG- 1385
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 GCTGTGGCGTTAGGCTCAACCATTTTATCCTAAACTGTTGTGTAATGATTGCTTAAGGGT 1317
Query 1386 CAAAAACTTTGCGAAGCT-GTGGTTTtgtgtgtgtgtgATTGAATAGAACG--GTGCTAT 1442
| || | ||| || ||||||||||||||| | | |||||| |||| |||||||
Sbjct 1318 CTTCT-CTAAGAGAA-CTTGTGGTTTTGTGTGTGAG--ACTGAATAAAACGCTGTGCTAT 1373
Query 1443 TGTGGGTTATCTTCTGATTCAGAGTCT--ATCTTGAGTTTTTGGTGAACGCTAGTGATTG 1500
|||||||||||||| ||||||| || | ||||| | ||||||||||||||| |||||||
Sbjct 1374 TGTGGGTTATCTTCCGATTCAGCGTTTGCATCTTCACTTTTTGGTGAACGCTGGTGATTG 1433
Query 1501 CTCATTTTGTGATATATCT-T---AAGCTTTTGCAAGATTGTGTTAAAAATAAGAAAGGT 1556
||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct 1434 CTCATTTTGTGATATATCTATCTTAAGCTTTTGTAAGATTGTGTTAAAAATAA-AAAGGT 1492
Query 1557 TGTT-ATATCTGAATAATTCGAAACAATCTG 1586
| || ||||||||||||||||||||||||||
Sbjct 1493 TATTTATATCTGAATAATTCGAAACAATCTG 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5