BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27170.1
Length=2750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1 4318 0.0
Ahg493886 jgi|Araly1|493886|fgenesh2_kg.7__3319__AT5G40890.1 1934 0.0
Ahg930004 jgi|Araly1|930004|scaffold_302461.1 455 8e-127
> Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1
Length=2715
Score = 4318 bits (2338), Expect = 0.0
Identities = 2600/2726 (95%), Gaps = 19/2726 (1%)
Strand=Plus/Plus
Query 15 CCACCAAGAAGTGCTTTGTTAACAGAGAAAGCTCTGTAAGAACCTTAAAAAGGTTCTGTT 74
||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1 CCACCCAGAAGTGGTTTGTTAACAGAGAAAGCTCTATAAGAACCTTAAAAA-GTTCTGTT 59
Query 75 GCAGAGGTTCCGACCAAAAGCCAGAGTTTCATCTTTATGTGAACAAAGACAGAGAGATGG 134
|||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 60 GCAGAGGTTCCGACCAAAAGCCAGAGTTTCATCTTTATGTGATCAGAGAC--AGAGATGG 117
Query 135 TGGAAGAAGATTTAAACCAGATTGGTGGTAATAGTAATTACAATGGAGAAGGAGGCGACC 194
|||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 118 TGGAAGAAGATTTAAACCAGATTGGTGGCAATAGTAATTACAATGGAGAAGCA---GACC 174
Query 195 CAGAGAGCAACACACTTAACCAACCTCTAGTTAAGGCTAATCGAACACTTTCTTCAACTC 254
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 175 CAGAGAGCAACACACTTAACCAACCTCTGGTTAAGGCTAATCGAACACTTTCTTCAACTC 234
Query 255 CACTTGCTTTGGTTGGTGCCAAAGTTTCCCATATCGAAAGCTTGGACTATGAAATAAACG 314
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 235 CTCTTGCCTTGGTTGGTGCCAAGGTTTCCCATATCGAAAGCTTGGACTATGAAATAAACG 294
Query 315 AGAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCACAAGTACTTCAATACG 374
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCACAAGTACTTCAATACG 354
Query 375 TGTTCTTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAATCGCTACTC 434
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGTTCCTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAATCGCTACTC 414
Query 435 TCATCAACTTAGCTGTTGAAAACATCGCCGGCTATAAGCTTTTAGCCGTTGGTCACTTCC 494
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 415 TCATCAACTTAGCTGTTGAAAACATCGCCGGCTACAAGCTTTTAGCCGTTGGTCACTTCC 474
Query 495 TCACTCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGTTGGGGCGAATTTGGGACTGA 554
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 TCACCCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGCTGGGGCGAATTTGGGACTGA 534
Query 555 CGTTGGTGGCGTCTGTGCTTTGTGTGTGCTTTGCTCCTACGGCGGCTGGACCTGGAATCC 614
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 535 CGTTGGTGGCGTCTGTGCTTTGTGTTTGCTTTGCTCCTACCGCGGCTGGACCTGGAATTC 594
Query 615 CTGAGATCAAAGCTTATCTTAATGGTGTAGATACTCCCAACATGTTTGGTGCTACTACTA 674
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 595 CTGAGATCAAAGCTTATCTTAATGGCGTTGATACTCCCAACATGTTTGGTGCTACTACTA 654
Query 675 TGATCGTTAAGATTGTTGGAAGCATTGGAGCGGTTGCAGCTGGACTTGATCTAGGTAAAG 734
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 655 TGATCGTTAAGATTGTTGGAAGCATTGGAGCGGTTGCAGCTGGACTTGATCTGGGTAAAG 714
Query 735 AGGGTCCTCTAGTTCACATTGGAAGCTGCATAGCTTCTTTGCTTGGACAAGGTGGAACAG 794
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 715 AGGGTCCTCTGGTTCACATTGGAAGCTGCATAGCTTCTTTGCTTGGACAAGGCGGAACAG 774
Query 795 ACAACCACCGTATCAAGTGGCGGTGGCTTCGTTACTTCAACAACGATAGAGACCGCAGGG 854
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 775 ACAACCACCGTATCAAGTGGCGATGGCTTCGTTACTTCAACAACGATAGAGACCGCAGGG 834
Query 855 ATCTGATTACATGTGGCTCAGCTGCAGGAGTGTGTGCAGCCTTCAGGTCACCTGTTGGAG 914
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 835 ATCTGATTACATGTGGTTCAGCTGCTGGAGTCTGTGCAGCCTTCAGGTCACCTGTTGGAG 894
Query 915 GTGTACTTTTCGCCCTCGAGGAAGTTGCTACTTGGTGGAGAAGTGCCTTATTGTGGCGGA 974
|||| ||||||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 895 GTGTGCTTTTCGCCCTTGAGGAAGTGGCCACTTGGTGGAGAAGCGCCTTATTGTGGCGGA 954
Query 975 CTTTCTTCAGCACAGCGGTTGTTGTGGTTGTTCTAAGAGAGTTCATAGAGATCTGCAATT 1034
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 955 CTTTCTTCAGTACAGCGGTCGTTGTGGTGGTTCTAAGAGAGTTCATAGAGATCTGCAATT 1014
Query 1035 CAGGGAAGTGTGGGTTGTTTGGAAAAGGAGGGCTAATCATGTTTGATGTGAGTCATGTAA 1094
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1015 CAGGGAAGTGTGGGTTGTTTGGAAAAGGAGGTCTTATCATGTTTGATGTGAGTCACGTAA 1074
Query 1095 CTTATACTTACCATGTAACTGATATAATCCCTGTCATGTTGATTGGTGTAATCGGTGGAA 1154
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTTATACTTACCATGTAACTGACATAATCCCTGTCATGTTGATTGGTGTAATCGGTGGAA 1134
Query 1155 TTCTTGGGAGCCTGTACAATCATCTT-CTGCATAAAGTTCTCAGGCTTTACAATCTCATC 1213
||||||||||||| || ||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 1135 TTCTTGGGAGCCTCTATAATCA-CTTCCTGCATAAAGTTCTCCGGCTTTACAATCTCATC 1193
Query 1214 AATGAGAAGGGTAAGATCCATAAGGTGCTTCTCAGTCTTACAGTATCACTCTTTACATCT 1273
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1194 AACGAGAAGGGTAAGATCCACAAGGTGCTTCTCAGTCTTACAGTATCACTCTTCACATCG 1253
Query 1274 GTTTGCCTTTATGGCCTTCCTTTCTTAGCGAAATGCAAGCCTTGTGACCCCTCGATAGAT 1333
||||||||||| || ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1254 GTTTGCCTTTACGGTCTTCCTTTCCTCGCGAAATGCAAGCCTTGTGACCCCTCGATAGAT 1313
Query 1334 GAGATATGCCCGACGAATGGAAGATCGGGTAACTTCAAACAGTTCCATTGCCCTAAAGGT 1393
||||| |||||||| |||||||||||||| ||||||||||||||| | ||||| ||||||
Sbjct 1314 GAGATCTGCCCGACCAATGGAAGATCGGGAAACTTCAAACAGTTCAACTGCCCAAAAGGT 1373
Query 1394 TACTACAATGATCTAGCTACTCTGCTTCTCACCACCAACGATGATGCTGTCAGAAACCTT 1453
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1374 TACTACAATGATTTAGCTACTCTGCTTCTCACCACCAACGATGACGCTGTCAGAAACCTT 1433
Query 1454 TTCTCTTCCAACACTCCCAATGAGTTTGGTATGGGTTCCCTTTGGATATTCTTTGTGCTA 1513
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1434 TTCTCTTCCAACACCCCCAATGAGTTTGGCATGGGTTCCCTGTGGATATTCTTTGTGCTC 1493
Query 1514 TACTGCATCTTGGGGCTTTTCACATTTGGTATTGCAACACCGTCTGGTCTCTTCCTCCCC 1573
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1494 TACTGCATCTTGGGGCTTTTCACATTTGGAATTGCAACACCGTCTGGTCTCTTCCTTCCC 1553
Query 1574 ATCATCCTCATGGGTGCTGCATATGGCCGAATGCTTGGCGCTGCAATGGGATCATACACA 1633
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1554 ATCATCCTCATGGGTGCTGCATATGGCCGAATGCTTGGCGCTGCGATGGGATCCTACACA 1613
Query 1634 AGTATTGACCAAGGGCTTTATGCTGTCCTTGGTGCAGCTGCACTCATGGCTGGATCGATG 1693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AGTATTGACCAAGGGCTTTATGCTGTCCTTGGTGCAGCTGCACTCATGGCTGGATCGATG 1673
Query 1694 AGAATGACTGTGTCACTCTGTGTTATATTCCTTGAACTCACCAACAACCTTCTTTTGCTT 1753
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1674 AGAATGACTGTGTCACTCTGTGTTATATTCCTCGAACTCACCAACAACCTTCTTTTGCTT 1733
Query 1754 CCTATAACGATGATCGTGCTTCTGATAGCCAAAACTGTGGGAGACAGCTTTAACCCGAGT 1813
|| || || ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1734 CCCATTACAATGATTGTGCTTCTGATTGCCAAAACTGTGGGAGACAGCTTCAACCCAAGT 1793
Query 1814 ATATATGACATCATCTTGCATCTAAAGGGCTTACCTTTCTTAGAAGCAAATCCAGAGCCG 1873
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 ATCTATGACATCATCTTGCATCTAAAGGGCTTACCTTTCTTAGAAGCAAATCCAGAGCCG 1853
Query 1874 TGGATGAGGAACCTCACCGTTGGTGAGCTTGGTGATGCTAAGCCCCCGGTTGTAACCCTG 1933
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TGGATGAGGAACCTCAGTGTTGGTGAGCTTGGTGATGCTAAGCCCCCGGTTGTAACCCTG 1913
Query 1934 CAAGGTGTTGAAAAGGTTTCAAATATAGTTGATGTGCTAAAGAACACGACGCATAATGCA 1993
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1914 CAAGGCGTAGAAAAGGTTTCAAAAATAGTTGATGTGCTAAAGAACACGACCCATAATGCA 1973
Query 1994 TTCCCTGTTTTAGATGAAGCAGAAGTACCTCAAGTGGGTCTAGCAACTGGGGCTACAGAA 2053
||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1974 TTCCCTGTTTTAGATAAAGCAGAAGTACCTCAAGTGGGTCTACCAACTGGTGCTACAGAA 2033
Query 2054 CTCCACGGGTTGATCTTGAGAGCGCACCTCGTTAAAGTTCTGAAAAAGAGATGGTTCTTG 2113
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 CTCCACGGGTTGATCCTGAGAGCGCACCTCGTTAAAGTTCTGAAAAAGAGATGGTTCTTG 2093
Query 2114 ACAGAGAAAAGAAGAACAGAGGAGTGGGAGGTCAGAGAAAAGTTTCCATGGGATGAATTG 2173
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2094 ACAGAGAAAAGAAGAACAGAAGAGTGGGAGGTCAGGGAGAAGTTTCCATGGGATGAATTG 2153
Query 2174 GCTGAAAGAGAAGACAACTTTGACGACGTGGCCATCACAAGCGCTGAAATGGAAATGTAT 2233
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 GCTGAGAGAGAAGACAACTTTGACGACGTGGCCATCACAAGCGCTGAAATGGAAATGTAT 2213
Query 2234 GTCGATCTTCATCCTCTCACCAACACAACACCTTACACAGTCATGGAGAACATGTCAGTG 2293
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2214 GTCGATCTTCATCCTCTTACCAACACAACACCTTACACAGTCATGGAGAACATGTCTGTG 2273
Query 2294 GCCAAGGCTTTAGTACTTTTCCGGCAAGTGGGACTCCGGCATTTGCTTATTGTTCCCAAG 2353
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GCCAAGGCTTTAGTACTATTCCGGCAAGTGGGACTCCGGCATTTGCTTATTGTTCCCAAG 2333
Query 2354 ATTCAAGCCTCAGGAATGTGTCCTGTGGTAGGGATCTTAACCAGACAGGACCTAAGGGCA 2413
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2334 ATTCAAGCCTCGGGAATGTGTCCTGTGGTAGGGATCTTAACCAGGCAGGATCTAAGGGCA 2393
Query 2414 TACAACATTCTACAAGCCTTTCCTCTCTTGGAAAAATCCAAAGGTGGAAA-GACACATTG 2472
|||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||
Sbjct 2394 TACAACATTCTACAAGCCTTTCCTCTATTGGAAAAATCCAAAAGTGGAAAAG-CACATTG 2452
Query 2473 AAAGAGCTACTTGCTT-GTTGTAAGAA-ATCGCTTGCAGCCTTGTGTTTTTCTTCTCATT 2530
|| ||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2453 AA-GAGCTACTTACTTTGTTGTAA-AATATCGCTTGCAGCCTTGTGTTTTTCTTCTCATT 2510
Query 2531 CTTAAAGATGTATCTGTCCAGTTTTGCACTTTTTCTTCATATCCAACAGAAGTTGATAAG 2590
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2511 CTTGAAGATGTATCTGTCCAGTTTTGCACTTCTTCTTCATATCCAACAGAAGTTGATAAG 2570
Query 2591 ATAAATATTGCAATGACACAAAAA-GAGAGA-CTCATATCTCCTTATCAACAGGAACAGA 2648
|||||||||||||||||||||||| |||||| | |||||| | |||||||||||||||||
Sbjct 2571 ATAAATATTGCAATGACACAAAAAAGAGAGAAC-CATATCGCGTTATCAACAGGAACAGA 2629
Query 2649 GCAAAACTGTTT-C-CATCTATTAGATGGTCTCCTAAACCTCTGAAGTTCAAGTGTTACA 2706
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2630 GCAAAACTGTTTTCTCATCTATTAGATGGTCTCCTAAACTTCTGAAGTTCAAGTGTTACA 2689
Query 2707 GACATTAACTAATAAGAGTCCTGTGA 2732
||||||||||||| ||| || |||||
Sbjct 2690 GACATTAACTAATGAGATTCTTGTGA 2715
> Ahg493886 jgi|Araly1|493886|fgenesh2_kg.7__3319__AT5G40890.1
Length=2890
Score = 1934 bits (1047), Expect = 0.0
Identities = 1903/2312 (82%), Gaps = 76/2312 (3%)
Strand=Plus/Plus
Query 181 AGAAGGAGGCGACCCAGAGAGCAACACACTT-AACCAACCTCTAGTTAAGGCTA-ATCGA 238
||||| ||| || ||||||| |||||| || ||||||||||| |||| | | || ||
Sbjct 358 AGAAGAAGGAGATCCAGAGAACAACAC-TTTGAACCAACCTCTCCTTAA-GAGACATAGA 415
Query 239 ACACTTTCTTCAACTCCACTTGCTTTGGTTGGTGCCAAAGTTTCCCATATCGAAAGCTTG 298
|| |||||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||
Sbjct 416 ACTCTTTCTTCAACTCCTCTTGCTTTGGTCGGTGCCAAGGTTTCACACATCGAGAGTTTA 475
Query 299 GACTATGAAATAAACGAGAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCA 358
|| ||||||||||| ||||| |||||||| |||||||| ||||||| |||||||| ||
Sbjct 476 GATTATGAAATAAATGAGAATGATCTGTTCAAGCATGACTGGAGAAGCAGATCAAAAACA 535
Query 359 CAAGTACTTCAATACGT-GTTCTTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCAC 417
||||| |||||||| | ||| | |||||||| |||||||||||||||||||| |||||
Sbjct 536 CAAGTGTTTCAATACATATTTC-TAAAATGGACATTAGCTTGTCTTGTTGGTCTCTTCAC 594
Query 418 TGGT-TTAATCGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTATAAGCTTT 476
|||| || |||||||||||||||||| | ||| | |||||||||||||| || || |||
Sbjct 595 TGGTCTT-ATCGCTACTCTCATCAACCTCGCTATCGAAAACATCGCCGGTTACAAACTTC 653
Query 477 TAGCCGTTGGTC-ACTTCCTCACTCAAGA-AAGATATGTTACAGGTCTGATGGTGC-TTG 533
| ||||| || | ||| | || |||||| | | | || |||||||||||| | | ||
Sbjct 654 TCGCCGTAGG-CTACTACATCGGTCAAGATAGGTTTTG-GACAGGTCTGATGAT-CTTTA 710
Query 534 TTGGGGCGAATTTGGGACTGACGTTGGTGGCGTCTGTGCTTTG-TGTGTGCTTTGCTCCT 592
||||| |||||||| ||||| ||||||||| | || | ||| ||| | ||||||||||
Sbjct 711 CGGGGGCAAATTTGGGTCTGACTTTGGTGGCGACAGTAC-TTGTTGTTTACTTTGCTCCT 769
Query 593 ACGGCGGCTGGACCTGGAATCCCTGAGATCAAAGCTTATCTTAATGGTGTAGATACTCCC 652
||||| ||||| || ||||| |||||||| ||||||||||||||||| | || ||||||
Sbjct 770 ACGGCCGCTGGTCCCGGAATTCCTGAGATTAAAGCTTATCTTAATGGCATTGACACTCCC 829
Query 653 AACATGTTTGGTGCTACTACTATGATCGTTAAGATTGTTGGAAGCATTGGAGCGGTTGCA 712
|| ||||||||| ||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 830 AATATGTTTGGTTTTACCACCATGATGGTTAAGATTGTTGGAAGTATTGGAGCGGTTGCA 889
Query 713 GCTGGACTTGATCTAGGTAAAG-AGGGTCCTCTAGTTCACATTGGAAGCTGCATAGCTTC 771
|||||||||||||| ||||||| |||| ||| | ||||| |||||||||||||| |||||
Sbjct 890 GCTGGACTTGATCTTGGTAAAGAAGGG-CCTTTGGTTCATATTGGAAGCTGCATTGCTTC 948
Query 772 TTTGCTTGGACAAGGTGGAACAGACAACCACCGTATCAAGTGGCGGTGGCTTCGTTACTT 831
||||||||| |||||||| |||| || ||| | ||||||||| | ||||||||||||||
Sbjct 949 TTTGCTTGGTCAAGGTGGTCCAGATAATCACAGAATCAAGTGGAGATGGCTTCGTTACTT 1008
Query 832 CAACAACGATAGAGACCGCAGGGATCTGATTACATGTGGCTCAG-CTGCAGGAGTGTGTG 890
||||||||||||||| || || ||||| ||||| ||||| || | || | ||||| ||||
Sbjct 1009 CAACAACGATAGAGATCGAAGAGATCTTATTACCTGTGGATCTGCCT-CTGGAGTATGTG 1067
Query 891 CAGCCTTCAGGTCACCTGTTGGAGGTGTACTTTTCGCCCTCGAGGAAGTTGCTACTTGGT 950
|||| ||||||||||| || ||||| || |||||||| || |||||||||||||| ||||
Sbjct 1068 CAGCTTTCAGGTCACCAGTAGGAGGAGTGCTTTTCGCACTTGAGGAAGTTGCTACGTGGT 1127
Query 951 GGAGAAGTGCCT-TATTGTGGCGGACTTTCTTCAGCACAGCGGTTGTTGTGGTTGTTCTA 1009
||||||||| || | |||||| |||| |||||||| ||||| ||||| |||||||| ||
Sbjct 1128 GGAGAAGTG-CTCTCTTGTGGAGGACATTCTTCAGTACAGCCGTTGTGGTGGTTGTACTG 1186
Query 1010 AGAG-AGTTCATAGAGATCTGCAATTCAGGGAAGTGTGGG-TTGTTTGGAAAAGGAGGGC 1067
|||| | ||||| || || || ||||| ||||| || ||| || || || |||||| |
Sbjct 1187 AGAGCA-TTCATTGAAATTTGTAATTCCGGGAAATGCGGGCTT-TTCGGCTCAGGAGGAC 1244
Query 1068 TAATCATGTTTGATGTGAGTCATGTA-ACTTATACTTACCATGTAACTGATATAATCCCT 1126
| || ||||||||||| ||||||||| | | || ||||| | | |||||||||||||
Sbjct 1245 TCATTATGTTTGATGTAAGTCATGTAGAGGT-TAGGTACCACGCAGCTGATATAATCCCG 1303
Query 1127 GTCATGTTGATTGGTGTAATCGGTGGAATTCTTGGGAGCCTGTACAATCATCTTCTGCAT 1186
|||| ||||||| || | ||||| |||||||| ||| |||||||||||||| |||||
Sbjct 1304 GTCACACTGATTGGAGTCTTTGGTGGCATTCTTGGAAGCTTGTACAATCATCTTTTGCAT 1363
Query 1187 AAAGTTCTCAGGCTTTACAATCTCATCAATGAGAAGGGTAAGATCCATAAGGTGCTTCTC 1246
||||||||| |||||||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 1364 AAAGTTCTCCGGCTTTACAATCTCATCAATCAGAAGGGTAAGATTCACAAGGTGCTTCTA 1423
Query 1247 AGTCTTACAGTATCACTCTTTACATCTGTTTGCCTT-TATGGCCTTCCTTTCTTAGCGAA 1305
|||||| ||||| || ||||| || ||||| ||| || || ||||||||||| ||| |
Sbjct 1424 AGTCTTGGGGTATCTCTATTTACCTCGGTTTG-CTTGTACGGTCTTCCTTTCTTGGCGGA 1482
Query 1306 ATGCAAGCCTTGTGACCCCTCGATAGATGAGATATGCCCGACGAATGGAAGATCGGGTAA 1365
||||||||||||| | || |||||||| ||||| || || || ||||||||||| || ||
Sbjct 1483 ATGCAAGCCTTGTAATCCTTCGATAGACGAGATGTGTCCAACAAATGGAAGATCAGGAAA 1542
Query 1366 CTTCAAACAGTTCCATTGCCCTAAA-GGTTACTACAATGATCTAGCTACTCTGCTTCTCA 1424
|||||| || ||| | || || ||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1543 CTTCAAGCAATTCAACTGTCC-AAATGGTTATTACAACGATCTAGCTACTCTGCTTCTCA 1601
Query 1425 CCACCAACGATGATGCTGTCAGAAACCTTTTCTCTTCCAACACTCCCAATGAGTTTGGTA 1484
| ||||| |||||||| ||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 1602 CAACCAATGATGATGCAGTCAGAAACATTTTCTCTTCAAACACTCCTAATGAGTTTGGTA 1661
Query 1485 TGGGTTCCCTTTGGATATTCTTTGTG-CTATACTGCATCTTGGGGCTTTTCACATTTGGT 1543
||| ||| || ||||||||||||| | || |||||||| ||||| ||| ||||||| |||
Sbjct 1662 TGGTTTCTCTCTGGATATTCTTTG-GCCTCTACTGCATTTTGGGTCTTATCACATTCGGT 1720
Query 1544 ATTGCAACACCGTCTGGTCTCTTCCTCCCCATCATCCTCATGGGTGCTGCATATGGCCGA 1603
|| || ||||| || ||||||||||| || || |||||||||||| ||||||| || ||
Sbjct 1721 ATAGCGACACCATCGGGTCTCTTCCTACCGATTATCCTCATGGGTTCTGCATACGGTCGG 1780
Query 1604 ATGCTTGGCGCTGCAATGGGATCATACACAAGTATTGACCAAGGGCTTTATGCTGTCCTT 1663
||||| ||| | ||||||||||| ||||||| || || ||||||||||| || || |||
Sbjct 1781 ATGCTAGGCACAGCAATGGGATCTTACACAAACATAGATCAAGGGCTTTACGCGGTTCTT 1840
Query 1664 GGTGCAGCTGCACTCATGGCTGGATCGATGAGAATGACTGTGTCACTCTGTGTTATATTC 1723
||||||||| ||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct 1841 GGTGCAGCTTCACTCATGGCTGGTTCAATGAGAATGACAGTTTCACTCTGTGTTATATTC 1900
Query 1724 CTTGAACTCACCAACAACCTTCTTTTGCTT-CCTATAACGATGATCGTGCTTCTGATAGC 1782
||||||||||||||||||||||||||| || || || || ||| | ||||||||||||||
Sbjct 1901 CTTGAACTCACCAACAACCTTCTTTTG-TTACCCATTACAATGTTTGTGCTTCTGATAGC 1959
Query 1783 CAAAACTGTGGGAGACAGCTTTAACCCGAGTATATATGACATCAT-CTTGCATCTAAAGG 1841
||||| || ||||||||||| || | ||||| || || ||||| || ||||||||||
Sbjct 1960 TAAAACAGTTGGAGACAGCTTCAATCTAAGTATCTACGAGATCATTCTC-CATCTAAAGG 2018
Query 1842 GCTTACCTTTCTTAGAAGCAAATCCAGAGCCGTGGATGAGGAACCTCACCGTTGGTGAGC 1901
||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || |||||||
Sbjct 2019 GCTTACCGTTCTTGGAAGCAAATCCAGAGCCATGGATGAGGAATCTCACTGTAGGTGAGC 2078
Query 1902 TTGGTGATGCTAAGCCCCCGGTTGTAACCCTGCAA-GGTGTTGA-AAAGGTTTCAAATAT 1959
|| || |||||||| ||||||||||| || || || || || |||| | | |||||
Sbjct 2079 TTAACGACGCTAAGCCTCCGGTTGTAACACTT-AACGGAGTAGAGAAAG-TCGCGAATAT 2136
Query 1960 AGTTGATGTGCTAAAGAACACGACGCATAATGCATTCCCTGTTTTAGATG-AAGCAGAAG 2018
||| ||||| |||| |||||| |||||||| |||||||| || || |||| || ||||
Sbjct 2137 AGTCGATGTACTAAGGAACACAACGCATAACGCATTCCCAGTCTTGGATGGAA-CAGA-- 2193
Query 2019 TACCTCAAGTGGGTCTAGCAACTGGGGCTACAGAACTCCACGGGT-TGATCTTGAGAGCG 2077
| | || | || |||| |||||| ||||| || | ||||| | |||||
Sbjct 2194 T-CA--AA------C---CA-CTGG---TACAGAGCTCCATGG-TCTGATCCTAAGAGCT 2236
Query 2078 CACCTCGTTAAAGTTCTGAAAAAGAGATGGTTCTTGACA-GAGAAAAGAAGAACAGAGGA 2136
||||| || |||||||||||||||||||||||||||| | |||||||| |||||||| ||
Sbjct 2237 CACCTTGTGAAAGTTCTGAAAAAGAGATGGTTCTTGA-ATGAGAAAAGGAGAACAGAAGA 2295
Query 2137 GTGGGAGGT-CAGAGAAAAGTTTC-CATGGGATGAATTGGCTGAAAGAGAAGACAACTTT 2194
||||| || | | |||||||| | || || |||||| ||||| |||||||| || |||
Sbjct 2296 ATGGGAAGTTCGG-GAAAAGTT-CACACCGGTTGAATTAGCTGAGAGAGAAGATAA-TTT 2352
Query 2195 -GACGACGTGGCCATCACAAGCGCTGAAATGGAAATGTATGTCGATCTTCATCCTCTCAC 2253
||||| || || || | |||| | || ||| || ||||||| |||||||||||| | ||
Sbjct 2353 CGACGATGTTGCAATTATAAGCTCAGAGATGCAATTGTATGTTGATCTTCATCCTTTGAC 2412
Query 2254 CAACACAACACCTTACACAGTCATGGAGAACATGTCAGTGGCCAAGGCTTTAGTACTTTT 2313
|||||| |||||||||||||| || ||| ||||||||||| || ||||| || || ||
Sbjct 2413 CAACACTACACCTTACACAGTGGTGCAGAGTATGTCAGTGGCTAAAGCTTTGGTGCTGTT 2472
Query 2314 CCGG-CAAGTGGGACTCCGGCATTTGCTTATTGTTCCCAAGATTCAAGCCTCAGGAATGT 2372
|||| || ||||| ||| | |||||||| ||||||||||||||||||| ||||| ||||
Sbjct 2473 CCGGTCA-GTGGGTCTCAGACATTTGCTGGTTGTTCCCAAGATTCAAGCTTCAGGGATGT 2531
Query 2373 GTCCTGTGGTAGGGATCTTAACCAGACAGGACCTAAGGGCATACAACATTCTACAAGCCT 2432
|||||| ||||||||||||| || || || |||||||| || |||||||||||||| |
Sbjct 2532 CACCTGTGATAGGGATCTTAACAAGGCAAGATCTAAGGGCTTATAACATTCTACAAGCAT 2591
Query 2433 TTCCTCTCTTGGAAAAATC-CAAAGGTGGAAA 2463
|||||| |||||| ||| | |||| |||||||
Sbjct 2592 TTCCTCACTTGGATAAA-CACAAAAGTGGAAA 2622
> Ahg930004 jgi|Araly1|930004|scaffold_302461.1
Length=406
Score = 455 bits (246), Expect = 8e-127
Identities = 269/280 (96%), Gaps = 1/280 (0%)
Strand=Plus/Plus
Query 307 AATAAACGAGAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCACAAGTACT 366
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 95 AATAAACGAAAACGATCTGTTTAAGCACGATTGGAGAAAAAGATCAAAGGCACAAGTGCT 154
Query 367 TCAATACGTGTTCTTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAAT 426
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TCAATACGTCTTCCTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAAT 214
Query 427 CGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTATAAGCTTTTAGCCGTTGG 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 215 CGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTACAAGCTTTTAGCCGTTGG 274
Query 487 TCACTTCCTCACTCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGTTGGGGCGAATTT 546
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 275 TCACTTTCTCACTCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGCTGGGGCCAATTT 334
Query 547 GGGACTGACGTTGGTGGCGTCTGTGCTTTGTGTGTG-CTT 585
||||||||||||||||||||||||||||||||| || |||
Sbjct 335 GGGACTGACGTTGGTGGCGTCTGTGCTTTGTGTTTGGCTT 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103757827380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5