BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27180.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936442 jgi|Araly1|936442|scaffold_500633.1 2505 0.0
Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1 505 6e-142
> Ahg936442 jgi|Araly1|936442|scaffold_500633.1
Length=1584
Score = 2505 bits (1356), Expect = 0.0
Identities = 1494/1561 (96%), Gaps = 7/1561 (0%)
Strand=Plus/Plus
Query 10 GATGAATTCGTCGAGCCTTTTCTCGTTCGGCGGTCGTTTTCCAATCATCAA-CTGCCGCG 68
|||| ||||||||||||||||||||||| || ||||| ||||||||| || ||||||||
Sbjct 25 GATGCATTCGTCGAGCCTTTTCTCGTTCAGCTCTCGTTATCCAATCAT-AACCTGCCGCG 83
Query 69 TGTCAGCTCCTGCTTCGGCTCCCTTCGTCGCTTCCGTTCCTCTCCCGCCGTCAACCTCCT 128
||||| ||||| | ||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 84 TGTCACCTCCTTCCTCGCCTCCCTTCGTCGCTTCCGTTCCTCTTCCGCCGTCAAGCTCCT 143
Query 129 CCGACTCACTAGCTTGCTCTCTCCAATGTCCTCATTTCCAATCGTGCTCAGGATGTACGC 188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 144 CCGACTCACTAGCTTGCTCTCTCCAATGTCCTCATTTCCAATCGTGCTCAGGTTGTACGC 203
Query 189 AAGAGTTCAATCTCCATCGTCCAGCTGTTGTCGACGAAGCTTCAGACTTCTTCAAGCGTT 248
| ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 204 AGGAGTTTAATCTCCACCGTCCAGCTGTTGTCGACGAAGCTTCAGGCTTCTTCAAGCGTT 263
Query 249 ACGGCGTCGATGATTTCACTTTCGACAGTTGTAGACTGTGGGGATGGAGATGCCGAGCAA 308
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 264 ACGGCGTCGAAGATTTCACTTTCGATAGTTGTAGACTGTGGGGATGGAGATGCCGAGCAA 323
Query 309 AATTGGCTGTTCGTGGCTCTTCAGATAACGCATTAATTGGATTGTACCAAGAAGGAACTC 368
||||||| |||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 324 AATTGGCCATTCGTGGCTCATCTGATAATGCATTGATTGGATTGTACCAAGAAGGAACTC 383
Query 369 ACACTGTTGTTGATATTCCTGAATGCAAATCTCATCATCCTAATATTAATGCTGCCATTG 428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ACACCGTTGTTGATATTCCTGAATGCAAATCTCATCATCCTAATATTAATGCTGCCATTG 443
Query 429 AGTTATTGAGAGAAGGTATTAAGGTGTTTGATGTTGTGCCATTTGATGAGGATCAGGGTA 488
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 444 AGTTACTGAGAGAAGGTATTAAGGTGTTTGATGTTGTGCCATTTGATGAGGATCAGGGCA 503
Query 489 CTGGGGACTTACGATATGTTCAGATGGCTGTTACGACGCATAGTACAAATCTTCGTGCTC 548
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 504 CTGGGGACTTACGATATGTTCAGATGGCTGTTACAACGCACAGTACAAATCTTCGTGCTC 563
Query 549 CAGAGAGATATAAAAATGGAAAAGTGCAGGTGTCCTTGGTTTGGAACTCGAGAAATGAGA 608
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 564 CAGAGAGATACAAAAATGGAAAAGTGCAGGTGTCTTTGGTTTGGAACTCGAGAAATGAGA 623
Query 609 GATCTCATAATGCAGATAAGTTGCAAGCATTGTCCACCTACTTGTGGAGAAAGGGTGGAC 668
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 624 GATCTCATAATGCAGATAAGTTGCAAGCATTGTCCAGTTACTTGTGGAGAAAGGGTGGAC 683
Query 669 CAAACAGCAAGTTTCACCTGATACATTCTGTCTGGGCTAACTTTCAGACATCAACCAACA 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CAAACAGCAAGTTTCACCTGATACATTCTGTCTGGGCTAACTTTCAGACATCAACCAACA 743
Query 729 ATATAATCTTTGGAAACAGATGGAGGCATCTTTTAGGTGAGAGAGATTTCTGGGAACATG 788
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 ATATAATTTTTGGAAACAGATGGAGGCATCTTTTAGGTGAGAGAGATTTCTGGGAACATG 803
Query 789 TAGGAGGAATTGACATATCCTTGGATCCTTCCAGTTTTGGCCAGGCAAATACTCGGGCTT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 804 TAGGAGGAATTGACATATCCTTGGATCCTTCCAGTTTTGGCCAGGCAAATACACGGGCTT 863
Query 849 TTGATAGCTTGCTTTGGAAACTGCATAAGTATGTTCCTGGTGGATCATCTGTTGCTGATC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTGATAGCTTGCTTTGGAAACTGCATAAGTATGTTCCTGGTGGATCATCTGTTGCTGATC 923
Query 909 TATATGCAGGAGCCGGAGTGATTGGATTATCGTTAGCTACATCGAGGAAATGCAGTTCTG 968
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 924 TATATGCAGGAGCCGGAGTGATTGGATTATCATTAGCTACATCGAGGAAATGCAGGTCTG 983
Query 969 TCAAATGCATTGAGGTTAACAAAGAAGCAAGGCTGTCTTTTGAGAAAACAATCCAGCGGT 1028
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 984 TCAAATGCATTGAGGTTAACAAAGAAGCAAGGCTATCTTTTGAGAAAACAATCCAGCGGT 1043
Query 1029 TGCCGAACTCATTGAATTGCAGCATCAGTTGGCACCATGCAGATGCTTCAGTTAACCCTC 1088
|||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGCCAAACTCAGTGGATTGTAGCATCAGTTGGCACCATGCAGATGCTTCAGTTAACCCTC 1103
Query 1089 TTTCGTGGATAATAGGATCAGATGTAGTCGTTGTGGATCCTCCTAGGAGAGGTCTGGATG 1148
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1104 TTTCGTGGATTATAGGATCAGATGTAGTCGTTGTGGATCCTCCTAGGAGAGGTCTCGATG 1163
Query 1149 CTTCTCTCCGTCAGATGCTGGAGTCTGTTCCCTCCATTGAGAAAAGAATGAGGTCGTCAT 1208
||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| |
Sbjct 1164 CTTCTCTGCGTCAGATGTTGGAGTCCGTCCCCTCCATTGAGAAAAGAATGAGGTCGTCGT 1223
Query 1209 CACAGAGTTCAAGCTTGAACGCAAAAGAGGAGAAGAGGCCGTGGATTTTAAGAGCAAAGG 1268
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1224 CACAGAGTTCAAACTCGAACACAAAAGAGGAGAAGAGGCCGTGGATTTTAAGAGCAAAGG 1283
Query 1269 AACTTTCAATTCAAGCTGGCAACAAGCAGACCTCTGAGGAGAACAATACACTACCGCAAA 1328
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct 1284 AACTTTCAATTCAAGCTGGCAACAAGCTGACCCCTGAGGAGAACAATACACTACCACAAA 1343
Query 1329 GACTCATATATATAAGCTGTGGTTGGGAAAGCTTTAAAGAGGACTGCAAGTCGTTATTAT 1388
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1344 GACTCATATATATAAGCTGTGGTTGGGAAAGCTTTAAGGAGGACTGCAAGTCGTTATTAT 1403
Query 1389 CTAGCAGAGCGTGGGAGTTGGAAAAAGCCCATGGCTTCAACTTCTTTCCCGGAACCGACA 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 CTAGCAGAGCGTGGGAGTTGGAAAAAGCCCATGGCTTCAACTTCTTTCCCGGAACCGACA 1463
Query 1449 GCATTGAAGTTTTGGCCGTATTCAAAAGAAGGGTTGCGAGCAAGAAAAAGAAGAAATCGG 1508
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1464 GCATTGAAGTTTTGGCCGTATTCAAAAGAAGGGTTGCGATCAAGAAAAAGAAGAAATCAG 1523
Query 1509 GAATaaaaaaaGTGGGAATTAAGAAAGTGCGTGCTA---AG--TCACAGGACTCTTATTA 1563
||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1524 GAATAAAGAAAGTGGGAATTAAGAAAGTGCGTGCTACGTAGAATCACAAGACTCTTATTA 1583
Query 1564 G 1564
|
Sbjct 1584 G 1584
> Ahg484500 jgi|Araly1|484500|fgenesh2_kg.5__492__AT3G27170.1
Length=2715
Score = 505 bits (273), Expect = 6e-142
Identities = 327/351 (93%), Gaps = 11/351 (3%)
Strand=Plus/Minus
Query 1547 TCACAGGACTCTTATTAGTTAATGTCTGTAACACTTGAACTTCAGAGGTTTAGGAGACCA 1606
||||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2715 TCACAAGAATCTCATTAGTTAATGTCTGTAACACTTGAACTTCAGAAGTTTAGGAGACCA 2656
Query 1607 TCTAATAGATG-G-AAACAGTTTTGCTCTGTTCCTGTTGATAAGGAGATATGAG-TCTCT 1663
||||||||||| | ||||||||||||||||||||||||||||| | |||||| | |||||
Sbjct 2655 TCTAATAGATGAGAAAACAGTTTTGCTCTGTTCCTGTTGATAACGCGATATG-GTTCTCT 2597
Query 1664 C-TTTTTGTGTCATTGCAATATTTATCTTATCAACTTCTGTTGGATATGAAGAAAAAGTG 1722
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2596 CTTTTTTGTGTCATTGCAATATTTATCTTATCAACTTCTGTTGGATATGAAGAAGAAGTG 2537
Query 1723 CAAAACTGGACAGATACATCTTTAAGAATGAGAAGAAAAACACAAGGCTGCAAGCGAT-T 1781
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2536 CAAAACTGGACAGATACATCTTCAAGAATGAGAAGAAAAACACAAGGCTGCAAGCGATAT 2477
Query 1782 TCTTACAACAA-GCAAGTAGCTCTTTCAATGTGTCTTT-CCACCTTTGGATTTTTCCAAG 1839
| ||||||||| | ||||||||||| ||||||| |||| |||| |||||||||||||||
Sbjct 2476 T-TTACAACAAAGTAAGTAGCTCTT-CAATGTG-CTTTTCCACTTTTGGATTTTTCCAAT 2420
Query 1840 AGAGGAAAGGCTTGTAGAATGTTGTATGCCCTTAGGTCCTGTCTGGTTAAG 1890
||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2419 AGAGGAAAGGCTTGTAGAATGTTGTATGCCCTTAGATCCTGCCTGGTTAAG 2369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5