BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27190.1
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936446 jgi|Araly1|936446|scaffold_500637.1 2333 0.0
Ahg493890 jgi|Araly1|493890|fgenesh2_kg.7__3323__AT5G40870.1 1563 0.0
> Ahg936446 jgi|Araly1|936446|scaffold_500637.1
Length=1493
Score = 2333 bits (1263), Expect = 0.0
Identities = 1422/1499 (95%), Gaps = 9/1499 (1%)
Strand=Plus/Plus
Query 129 TTACCTTCGCCGAGAAACTCAATGCCAGAAGATTC-AACGGCGATTGACTATGTCATGGA 187
|||| ||| || |||| |||||||| |||||||| || ||||||||||||||||||||
Sbjct 1 TTACATTCAACGGGAAATTCAATGCCGGAAGATTCTAA-TGCGATTGACTATGTCATGGA 59
Query 188 GAAGGCATCGGGGCCTCACTTCTCCGGTCTTCGCCTTGACGGTCTTCTTTCTTCTCCGTC 247
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 GAAGGCATCGGGGCCTCACTTCTCCGGTCTTCGCCTTGACGGTCTTCTCTCTTCTCCGTC 119
Query 248 GAAATCCTCCGTCTCTTCTCCTTCTCACTTCCGTTTGAGTAATTCTTCTTTTTCGGCTAC 307
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct 120 GAAATCCTCCGTCTCTTCTCCTTCTCATTTCCGTTTAAGTAATTCATCTTTTTCCGCTAT 179
Query 308 CGACGATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTC 367
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CGACGATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACTGCTTC 239
Query 368 TGGTAAGACGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTT 427
||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 240 TGGTAAGACCACGGTGTGTGACATGATTATTCAGCAACTTCATGATCATCGCATTGTTCT 299
Query 428 AGTTAACCAGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTT-GAGCATGTACAAG 486
||||||||||||||| |||||||||||| |||||||||||||| || |||||||||||||
Sbjct 300 AGTTAACCAGGATTCCTTTTACCGTGGTCTGACATCTGAAGAA-TTGGAGCATGTACAAG 358
Query 487 AATACAATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA 546
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AATATAATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA 418
Query 547 TACTCAAGAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTA 606
|||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 419 CACTCAAGAGTGGGCAACCTTATCAAATTCCAATTTACGACTTCAAAACCCATCAACGTA 478
Query 607 AAGTAGATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAG 666
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 AATTAGATGCTTTTCGTCAGGTCAATGCTTGTGATGTCATAATTTTGGAAGGGATTCTAG 538
Query 667 TTTTTCATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATG 726
|||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 539 TTTTCCATGACTCGCGAGTTCGGGACTTGATGAATATGAAGATCTTCGTTGACACAGATG 598
Query 727 CTGATGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTG 786
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 CTGATGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGCAGGGATGTTG 658
Query 787 ACTCTGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCC 846
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ATTCTGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCCGCGTTTGATGATTTTGTGCTCC 718
Query 847 CCTCAAAGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTG 906
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 719 CCTCTAAGAAATATGCTGATGTGATCATTCCCCGAGGAGGTGACAATCATGTTGCAGTTG 778
Query 907 ATTTGATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACC 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTTGATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACC 838
Query 967 CAAATGTTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAG 1026
|||| ||||||||||||||| ||||||||||||| ||||||||||| || || |||||||
Sbjct 839 CAAACGTTTTTGTTATTGAATCAACATTTCAGATTAGAGGCATGCATACACTTATTCGAG 898
Query 1027 AGAAGGACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTG 1086
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 899 AGAAGGACATATCAAAACATGACTTTGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTG 958
Query 1087 TGGAGCATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGAT 1146
| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 959 TAGAGCACGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACCCCAACAGGAT 1018
Query 1147 CTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTG 1206
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1019 CTGTGTATAGCGGTGTTGATTTCTGCAAGAAACTTTGTGGCGTCTCAGTCATTCGAAGTG 1078
Query 1207 GTGAAAGCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTC 1266
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1079 GTGAAAGCATGGAAAACGCATTACGCGCGTGTTGCAAAGGGATAAAGATAGGGAAGATTC 1138
Query 1267 TCATCCATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCAAGTGATA 1326
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCATCCATCGTGATGGCGACAATGGAATGCAGCTTATATACGAGAAGCTTCCAAGTGATA 1198
Query 1327 TCTCCGAGCGTCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATC 1386
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 TCTCCGAGCGCCATGTCCTGCTATTAGATCCTGTTTTAGGCACAGGTAACTCTGCAAACC 1258
Query 1387 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1259 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCTTAAATC 1318
Query 1447 TTATCTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAAAGTTGAAGATTG 1506
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 TCATCTCAGCGCCCGAAGGAATCCATTGCGTCTGCAAACGGTTTCCAAAGTTGAAGATTG 1378
Query 1507 TGACGTCAGAAATCGATCAGTGTCTGAACGAAGAGTT-CAGGGTTATACCAGGCTTGGGT 1565
|||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1379 TGACTTCAGAAATCGATCAGTGTCTGAACGAAGAGTTTC-GAGTTATACCAGGCTTGGGT 1437
Query 1566 GAGTTTGGTGATCGCTACTTTGGTACCGACGAGTAGAAGAAGTACCAAAGTGTTTGTCA 1624
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1438 GAGTTTGGTGATCGCTACTTTGGTACTGACGAGTAGAA-AC--ACCAAAGTGTTTGTCA 1493
> Ahg493890 jgi|Araly1|493890|fgenesh2_kg.7__3323__AT5G40870.1
Length=1845
Score = 1563 bits (846), Expect = 0.0
Identities = 1267/1470 (86%), Gaps = 29/1470 (2%)
Strand=Plus/Plus
Query 148 CAATGCCAGAAGATTCAACGGCGATTGACTATGTC-ATGGAGAAGGCATCGGGGCCTCAC 206
||||||| || ||||| | | || ||||| | | ||||||||||||||||||||||||
Sbjct 112 CAATGCCGGAGGATTCTTCTTCAATAGACTACG-CGATGGAGAAGGCATCGGGGCCTCAC 170
Query 207 TTCTCCGGTCTTCGCCTT-GACGGTC-T-TCT-TTCTTCTCCGTCGAAATCCT---CCGT 259
|||||||||||||| ||| ||||| | | ||| ||||||||| | || |||| ||||
Sbjct 171 TTCTCCGGTCTTCG-CTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGT 229
Query 260 CTCTTCTCCTTCTCACTTCCGTTTGAG-TAATTCTT-CT-TT-TTCGGCTACCGACGATC 315
|||||| | ||||||| |||| | || ||||| || || | ||||| | |||||
Sbjct 230 CTCTTCACTTTCTCACCTCCG-ATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATC 288
Query 316 CCGCCGCTCCTC-ATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACAGCTTCTGGTAAG 374
||| |||||| | | ||||||||| ||||||| ||| |||||||||| |||||||||||
Sbjct 289 CCGACGCTCC-CAAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAA 347
Query 375 ACGACGGTATGTGACATGATAATCCAGCAACTTCATGATCATCGCATTGTTTTAGTTAAC 434
|| || || || || ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 348 ACCACAGTCTGCGATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAAT 407
Query 435 CAGGATTCGTTTTACCGTGGTTTGACATCTGAAGAACTTG-AGCATGTACAAGAATACAA 493
|||||||| ||||| |||||||||||||||| || | ||| ||| ||| ||||| |||||
Sbjct 408 CAGGATTCCTTTTATCGTGGTTTGACATCTG-AGGAGTTGCAGCGTGTGCAAGAGTACAA 466
Query 494 TTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACA-TACTCA 552
||||||||||| ||||| |||||||||||||||||||||||||| | ||| | | ||||
Sbjct 467 CTTTGATCATCCCGATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACT-CTCA 525
Query 553 AGAGTGGGCAACCCTATCAAATTCCAATTTATGACTTCAAGACCCATCAACGTA-AAGTA 611
|||| ||||||||||||||| ||||||| || ||||| |||||||||||||||| | |
Sbjct 526 AGAGCGGGCAACCCTATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCT- 584
Query 612 GATGCTTTTCGCCAGGTCAATGCTTGTGATGTCATCATTTTGGAAGGGATTCTAGTTTTT 671
||| |||| |||||||||||||||| |||||| || || ||||||||||||||||||||
Sbjct 585 GATACTTTCCGCCAGGTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTC 644
Query 672 CATGACTCACGAGTTCGGGACCTAATGAATATGAAGATCTTCGTTGACACAGATGCTGAT 731
|||||||||||||||||| | || |||||||||||| |||| ||||| ||||||||||||
Sbjct 645 CATGACTCACGAGTTCGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGAT 704
Query 732 GTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGTAGGGATGTTGACTCT 791
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 705 GTAAGGCTTGCTCGCAGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCT 764
Query 792 GTGCTTGAACAGTATGCAAAGTTTGTGAAGCCTGCGTTTGATGATTTTGTGCTCCCCTCA 851
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 765 GTGCTTGAACAGTATGCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCG 824
Query 852 AAGAAATATGCTGATGTGATCATTCCACGAGGAGGTGACAATCACGTTGCAGTTGATTTG 911
|||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 825 AAGAAATATGCTGACGTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTG 884
Query 912 ATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAAT 971
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 885 ATTACACAACATATCCACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAAT 944
Query 972 GTTTTTGTTATTGAAACAACATTTCAGATAAGAGGCATGCACACTCTCATTCGAGAGAAG 1031
|||| || || || ||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 945 GTTTACGTCATCCAATCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAG 1004
Query 1032 GACATATCAAAACATGACTTCGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTGGAG 1091
||||||||||| ||||| || |||||||| |||||||| ||||||||| |||||||||||
Sbjct 1005 GACATATCAAAGCATGATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAG 1064
Query 1092 CATGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACTCCGACAGGATCTGTG 1151
||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 1065 CATGGTCTTGGTCATTTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTA 1124
Query 1152 TATAGCGGTGTTGATTTCTGCAAGAAACTCTGTGGGGTCTCAGTCATTCGAAGTGGTGAA 1211
|||| |||||||||||||||||||||||| |||||||||||| | ||| |||||||||||
Sbjct 1125 TATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAA 1184
Query 1212 AGCATGGAAAACGCATTGCGCGCATGTTGCAAAGGGATTAAGATAGGGAAGATTCTCATC 1271
||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 1185 AGCATGGAAAATGCATTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATC 1244
Query 1272 CATCGTGACGGAGACAATGGAATGCAGCTTATATACGAGAAGCTTCCA-AGTGATATCTC 1330
|| ||||| || |||||||||| |||||||| || ||||||||||| | || |||||
Sbjct 1245 CACCGTGATGGCGACAATGGAAAACAGCTTATTTATGAGAAGCTTCCTCAC-GACATCTC 1303
Query 1331 CGAGCGTCATGTCCTGCTAT-TAGATCCTGTTTTAGGCACAGGTAACTCTGCAAATCAGG 1389
|| || ||||||||||| | |||||||||| |||| ||||||||||||||||||||| |
Sbjct 1304 TGAACGCCATGTCCTGCT-TCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAG 1362
Query 1390 CGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCCTCAATCTTA 1449
| || ||| |||| |||||||||||||| |||||| | ||||||||||||||||| ||||
Sbjct 1363 CCATTGAATTACTTATACAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTA 1422
Query 1450 TCTCAGCGCCAGAAGGAATCCATTGCGTCTGCAAACGGTTCCCAA-AGTTGAAGATTGTG 1508
|||| || || || |||||||| || ||||||||||| || ||| | |||||||| |||
Sbjct 1423 TCTCGGCACCGGAGGGAATCCACTGTGTCTGCAAACGTTTTCCAGCA-TTGAAGATAGTG 1481
Query 1509 ACGTCAGAAATCGATCAGTGTCTGAACGAAGAGTTCAGGGTTATACCAGGCTTGGGTGAG 1568
||||| ||||| || |||||||| ||| |||||||| | |||||||| ||||| || |||
Sbjct 1482 ACGTCTGAAATAGACCAGTGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAG 1541
Query 1569 TTTGGTGATCGCTACTTTGGTACCGACGAG 1598
||||||||||| ||||| || |||||||||
Sbjct 1542 TTTGGTGATCGTTACTTCGGCACCGACGAG 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70276502025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5