BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27200.1 Length=774 Score E Sequences producing significant alignments: (Bits) Value Ahg484503 jgi|Araly1|484503|fgenesh2_kg.5__495__AT3G27200.1 1024 0.0 > Ahg484503 jgi|Araly1|484503|fgenesh2_kg.5__495__AT3G27200.1 Length=739 Score = 1024 bits (554), Expect = 0.0 Identities = 700/765 (92%), Gaps = 31/765 (4%) Strand=Plus/Plus Query 2 TATATCAAAACCGAGTTCAATTC-ACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 60 |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1 TATATCAAAACCAAGTTCAA-TCTACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 59 Query 61 TTGGTTTTCTCCGGTTTACTTTCGGTTAAGACAGCGTTAGCAGCACGACATGTGATCGGC 120 ||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||| Sbjct 60 CTGGTTTTCTCCGGTTTAATCTCGGTTAAGACAACGTTAGCAGCACAACATGTGATCGGC 119 Query 121 GGGAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGTAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 179 Query 181 AAAGTCGGCGACCAAATCGTTTTTAAGTATTCAGAACTACACAGCGTTGTGGAGCTAGGA 240 ||||||||||||||||||||||||||||| || | |||||| |||||||| ||||||||| Sbjct 180 AAAGTCGGCGACCAAATCGTTTTTAAGTACTCCGGACTACATAGCGTTGTAGAGCTAGGA 239 Query 241 AGTGAAACAGCATACAAGAGTTGTGACCTGGGAACATCAGTTAATTCCTTAAGCTCTGGA 300 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 240 AGTGAAACGGCATACAAGAGTTGTGACCTGGGAACATCAGTCAATTCCTTAAGCTCTGGA 299 Query 301 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGA 359 Query 361 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCCGCT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 360 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCTGCT 419 Query 421 TCCTCTCCTTCAGGTTCAGGTTCGGGTTCGGATTCAGGGTCGGGTTCTGGATCTAGTTCA 480 |||||||| ||||||||||||| ||||||| |||||||||||||||||||| Sbjct 420 TCCTCTCCG---GGTTCAGGTTCGG------ATTCAGGATCGGGTTCTGGATCTAGTTCG 470 Query 481 GGTCATGGGTTACGTGCTTCCACTGGATACATGTTCGTTGTTGGATCGTTGGTTATTGGT 540 ||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 471 GGTCATGGGCTACGTGGTTCCATTGGATACATTTTCGTTGTTGGATCGTTGGTTATTGGT 530 Query 541 CTTATTTGGGCTTACTAATAATTGTTTAGGGCTTTTTTGTAATGTATCGAATATAT-TTG 599 ||| |||||||||||| | | |||| |||||||||||||||||| || Sbjct 531 CTTTTTTGGGCTTACT-------G---A----TTTT--GTAATGTATCGAATATATATTC 574 Query 600 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 634 Query 660 AGTTCGGATATTTGCATTTCTGATCTAATTTTCT-ATATATATCTTGTTTTTCATGTTTT 718 |||||||||||||| | || |||||| ||| | | ||||||||||||||||||||||||| Sbjct 635 AGTTCGGATATTTGAAATTATGATCTTATTCTATTATATATATCTTGTTTTTCATGTTTT 694 Query 719 CTCAACCGCTACTCCACTTGATTGGTT-GAGTTGGAATATTCttt 762 |||||||| | ||||||||||||||| | ||||||||||||||| Sbjct 695 CTCAACCGATTGTCCACTTGATTGGTTCG-GTTGGAATATTCTTT 738 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28554064833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5