BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27200.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484503 jgi|Araly1|484503|fgenesh2_kg.5__495__AT3G27200.1 1024 0.0
> Ahg484503 jgi|Araly1|484503|fgenesh2_kg.5__495__AT3G27200.1
Length=739
Score = 1024 bits (554), Expect = 0.0
Identities = 700/765 (92%), Gaps = 31/765 (4%)
Strand=Plus/Plus
Query 2 TATATCAAAACCGAGTTCAATTC-ACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 60
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 TATATCAAAACCAAGTTCAA-TCTACTAAACCAATGAAAATGCAAGCAGTTCTTGTTATC 59
Query 61 TTGGTTTTCTCCGGTTTACTTTCGGTTAAGACAGCGTTAGCAGCACGACATGTGATCGGC 120
||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 60 CTGGTTTTCTCCGGTTTAATCTCGGTTAAGACAACGTTAGCAGCACAACATGTGATCGGC 119
Query 121 GGGAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTAGCCAAGGCTGGGAACAATCCGTTGATTTTGATTCTTGGTCTTCTGATCAATCTTTC 179
Query 181 AAAGTCGGCGACCAAATCGTTTTTAAGTATTCAGAACTACACAGCGTTGTGGAGCTAGGA 240
||||||||||||||||||||||||||||| || | |||||| |||||||| |||||||||
Sbjct 180 AAAGTCGGCGACCAAATCGTTTTTAAGTACTCCGGACTACATAGCGTTGTAGAGCTAGGA 239
Query 241 AGTGAAACAGCATACAAGAGTTGTGACCTGGGAACATCAGTTAATTCCTTAAGCTCTGGA 300
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 AGTGAAACGGCATACAAGAGTTGTGACCTGGGAACATCAGTCAATTCCTTAAGCTCTGGA 299
Query 301 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AACGACGTCGTTAAGCTTTCTAAAACCGGTACTCGTTACTTCGCTTGTGGAACCGTTGGA 359
Query 361 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCCGCT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 CATTGCGAACAAGGCATGAAGATTAAAGTCAACGTTGTCTCTTCTGACTCCAAATCTGCT 419
Query 421 TCCTCTCCTTCAGGTTCAGGTTCGGGTTCGGATTCAGGGTCGGGTTCTGGATCTAGTTCA 480
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 420 TCCTCTCCG---GGTTCAGGTTCGG------ATTCAGGATCGGGTTCTGGATCTAGTTCG 470
Query 481 GGTCATGGGTTACGTGCTTCCACTGGATACATGTTCGTTGTTGGATCGTTGGTTATTGGT 540
||||||||| |||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 471 GGTCATGGGCTACGTGGTTCCATTGGATACATTTTCGTTGTTGGATCGTTGGTTATTGGT 530
Query 541 CTTATTTGGGCTTACTAATAATTGTTTAGGGCTTTTTTGTAATGTATCGAATATAT-TTG 599
||| |||||||||||| | | |||| |||||||||||||||||| ||
Sbjct 531 CTTTTTTGGGCTTACT-------G---A----TTTT--GTAATGTATCGAATATATATTC 574
Query 600 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GTGGGGAGAGAATAAATATTTTTGGAATTATTAATTCGTACTTGTTGTTGTATTTTATAT 634
Query 660 AGTTCGGATATTTGCATTTCTGATCTAATTTTCT-ATATATATCTTGTTTTTCATGTTTT 718
|||||||||||||| | || |||||| ||| | | |||||||||||||||||||||||||
Sbjct 635 AGTTCGGATATTTGAAATTATGATCTTATTCTATTATATATATCTTGTTTTTCATGTTTT 694
Query 719 CTCAACCGCTACTCCACTTGATTGGTT-GAGTTGGAATATTCttt 762
|||||||| | ||||||||||||||| | |||||||||||||||
Sbjct 695 CTCAACCGATTGTCCACTTGATTGGTTCG-GTTGGAATATTCTTT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5