BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27210.1
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484504 jgi|Araly1|484504|fgenesh2_kg.5__496__AT3G27210.1 1099 0.0
> Ahg484504 jgi|Araly1|484504|fgenesh2_kg.5__496__AT3G27210.1
Length=905
Score = 1099 bits (595), Expect = 0.0
Identities = 798/887 (90%), Gaps = 49/887 (6%)
Strand=Plus/Plus
Query 25 TCGATCTCGTTTGATCATAATTTCTCAATC-AAA-T-T-TCT-T-TCTCTAAAAAGGTTT 78
||||||||| |||||||||||| ||||||| ||| | | ||| | ||||| |||||||||
Sbjct 28 TCGATCTCG-TTGATCATAATTGCTCAATCAAAACTCTCTCTCTATCTCT-AAAAGGTTT 85
Query 79 TGCTCTTTATAAATTTATTTTGATTACTTATATTAA----T--CTATGAATGGGTTCGTC 132
| |||||| ||| ||| ||||||||| ||||| ||| | |||||||||||||||||
Sbjct 86 TTCTCTTTTTAACTTTGTTTTGATTATTTATA-TAATCTTTGCCTATGAATGGGTTCGTC 144
Query 133 TTCGTCGTCGTCGCTTAATAACTCTCCGATTAGAGCTGATAGTATGGTAACTCCAGAATC 192
| ||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 145 -T--TCGTCGTCGCTTAATAATTCTCCGATTAGAGTTGATAGCATGGTAACTCCAGAATC 201
Query 193 TCAGATGACTGTGAACGATAACAAAAACGACAACGTTTCGATCTTGTCTCCTTCTGTCAA 252
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 202 TCCGATGACTGTGAAGGATAACAAAAACGACAACGTTTCGATCATGTCTCCTTC---CAA 258
Query 253 GAAAAGCTTTGAATCGCCAAGGAAGAGTA---C--TT-C-GA----T-T----C--CGGC 294
|||||| |||||||||||||||||||||| | || | || | | | ||||
Sbjct 259 GAAAAGTTTTGAATCGCCAAGGAAGAGTACTTCGATTCCGGAGGTTTCTCCGACGACGGC 318
Query 295 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTCTCTTCATCCAAGAAAAGTTT 354
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 319 GAATAATAATCTCACTCCGGTCAAATCTCGGTGGTCTTTTTCTTCATCCAAGAAAAGTTT 378
Query 355 CGGAAGCAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGACTCCGACGA 414
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 379 TGGAAGTAAAGATGAAACCTTTTTCGATTCGCAGCCATGGCTACAATCTGATTCCGATGA 438
Query 415 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 TGATTTCCACAGCGTAAATGGCGATTTCACTCCATCACTCGGAAACACTCCTAAGAGCAG 498
Query 475 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAAGAAGCCTTCCCG 534
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 499 CTTCTCAGATAGGCCACCACGTTTCCACAACCTTATATTCCACGAGAGGAAGTCTTCCCG 558
Query 535 AGGCTCGTCTTCTCCAGCGCCACTTCCAAGGAGGAAGAAGCTTGGTGAGCTTTTCAGAGA 594
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 559 AGGCTCGTCTTCTCCAGCACCACTTCCAAGAAGGAAGAAGCTTGGTGAGCTATTCAGAGA 618
Query 595 CAGTATAAGAGAAGAACGAGAAGAAAGC---G--G----TTCATCGTCAGCTATAAGCAC 645
|||||||||||||||||||||||||||| | | |||||| ||||||||||||||
Sbjct 619 CAGTATAAGAGAAGAACGAGAAGAAAGCTCTGAAGGCGGTTCATCCTCAGCTATAAGCAC 678
Query 646 TCCTTATCTATCAGGTGCTAACTCACGCGAATTCAATGACACCGCCATCGAAAAGGAAGA 705
||||||||| || |||||||||||| | |||||||| |||| ||||||||| ||||||||
Sbjct 679 TCCTTATCTCTCTGGTGCTAACTCAGGAGAATTCAACGACAACGCCATCGAGAAGGAAGA 738
Query 706 GAAGAAGAAGTCTAACTGGCATCATCATCGTTGTCTTCCTGGTTTCTCTTCATGTGGTGG 765
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 739 GAAGAAGAAGTCTAATTGGCAGCATCATCGTTGTCTTCCTGGATTCTCTTCATGTGGTGG 798
Query 766 AAGTTTCATGGAGAGGAGGAAGAAGATGAGTTCTGAAACTCCAGTTGTTGCTGTGAAATG 825
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 799 AAGTTTCATGGAGAGGAGGAAGAAGATGAGCTCTGAAACTCCGGTTGTTGCTTTGAAATG 858
Query 826 AGATGTAGAGATTAT-GAAATTTGGAAATGTTTTGTATATGAAAGAA 871
| ||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 859 AAATGTAGAGAATCTTGAAATTTGGAAATGTTTTGTATATGAAAGAA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40905889941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5