BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27220.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936451 jgi|Araly1|936451|scaffold_500642.1 2043 0.0
> Ahg936451 jgi|Araly1|936451|scaffold_500642.1
Length=1315
Score = 2043 bits (1106), Expect = 0.0
Identities = 1234/1296 (95%), Gaps = 8/1296 (1%)
Strand=Plus/Plus
Query 71 CTGCATAAACACAAATGGCGAATAAACCTGatcatcatcatcatcatcaCCAATCTTCAA 130
|||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||
Sbjct 7 CTGCTTAAACACAAATGGCGAATAAACCTG---ATCATCATCA-C--CACCAATCTTCAA 60
Query 131 GGAGATTGATGCTTGTGTTGTACTTCACCAGTGTTCTTGGGATTGGATTCATCGCAGCTT 190
|||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||
Sbjct 61 GGAGATTGATGCTTGTATTGTACTTCACCAGCGTTCTTGGGATTGGATTCGTTGCGGCTT 120
Query 191 TTCTTTGTCTCTCTTCTTCAATTCCCTCAGTATCCGCTGTTTTTTCAATCTGGGTTCCCG 250
|||||||||| ||||||||||||| |||| | ||| | ||| |||||||| ||||||||
Sbjct 121 TTCTTTGTCTGTCTTCTTCAATTCTCTCATTCTCCACCCTTTCTTCAATCTCGGTTCCCG 180
Query 251 TTAACCGGCCGGAGATACAGATTCCGATCATCGATTCCAAAATTGTTCAAAAGAGAAGCA 310
| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TAAACCGGCCGGAGATTCAGATTCCGAACATCGATTCCAAAATTGTTCAAAAGAGAAGCA 240
Query 311 AACAATCGAATGATACAAAAGATCATGTCCGATTCTTATCGGCAATATTTGCCGATATAC 370
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||
Sbjct 241 AACAATCGAATGATACAAAAGATCATCTCCGATTTTTATCGGCAACATTTGCCGATATAC 300
Query 371 CGGCGCCGGAGTTAAAATGGGAGGAAATGGAATCAGCTCCAGTTCCTCGTCTTGATGGAT 430
|||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 301 CGGCGCCGGAATTACAATGGGAGCAAATGCAATCAGCTCCAGTTCCTCGTCTTGACGGAT 360
Query 431 ACTCAGTTCAAATCAATAACCTTTTGTATGTCTTCTCCGGTTACGGCAGTCTCGACTATG 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTCAGTTCAAATCAATAACCTTTTGTATGTCTTCTCCGGTTACGGCAGTCTCGACTATG 420
Query 491 TTCATTCTCATGTGGATGTGTTCAATTTCACAGACAATAAGTGGTGTGACAGATTCCACA 550
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 421 TTCATTCTCATGTGGATGTGTTCAATTTCACAGACAATAAGTGGTGTGAGAGATTCAACA 480
Query 551 CTCCTAAAGAAATGGCGAATTCGCACCTCGGGATTGTGACGGATGGACGGTATGTATATG 610
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 481 CTCCTAAAGAGATGGCGAATTCGCACCTTGGGATTGTGACAGATGGACGGTATGTGTATG 540
Query 611 TGGTTTCAGGGCAGCTTGGTCCACAATGTAGAGGACCTACTTCTCGTTCCTTTGTTTTAG 670
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 541 TGGTTTCAGGGCAGCTTGGTCCACAATGTAGAGGACCCACATCTCGTTCCTTTGTATTAG 600
Query 671 ACTCATTCACAAAGACTTGGCTCGAATTTCCTTCACTACCAGCTCCAAGGTATGCTCCTG 730
| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 ATTCAATCACAAAGACTTGGCTCGAGTTTCCTTCACTACCAGCTCCAAGGTATGCTCCTG 660
Query 731 CGACTCAGATATGGAGAGGGAGGCTTCATGTGATGGGTGGAAGCAAAGAGAATCGCAATG 790
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 CGACTCAGATATGGAGAGGGAGGCTTCATGTGATGGGTGGAAGCAAAGAAAATCGCAATG 720
Query 791 CCGTTGCTTTTGACCATTGGAGCATAGCTGTAAAAGATGGCAAAGCACTCGACGAATGGC 850
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 CGGTTGCTTTTGACCATTGGAGCATAGCTGTAAAAGATGGCAAAGCACTTGACGAATGGC 780
Query 851 GGGAAGAGGTCCCTATTCCTCGAGGTGGACCACACAGGGCTTGTGTAGTTGCTAACGATA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 GGGAAGAGGTCCCTATTCCTCGAGGTGGACCACACAGGGCTTGTGTAGTTGCTAATGATA 840
Query 911 AACTACTTGTAATCGGTGGCCAAGAAGGTGACTTCATGGCCAAACCTAACTCACCCATCT 970
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AACTACTTGTGATCGGTGGCCAAGAAGGTGACTTCATGGCCAAACCTAACTCACCCATCT 900
Query 971 TCAAGTGCTCACGTAGACGCGAGATCTTTAATGGTGAGGTGTACATGATGGACGAGGAGA 1030
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 TCAAGTGCTCACGTAGACGCGAGATCTTTAATGGTGAGGTGTATATGATGGACGAGGAGA 960
Query 1031 TGAAGTGGAAAATGTTGCCACCAATGCCAAAAAACAATTCCCACATTGAATCTGCGTGGA 1090
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 961 TGAAGTGGAAAGTGTTGCCACCAATGCCAAAGAACAATTCCCACATTGAATCTGCATGGA 1020
Query 1091 TCATTGTCAATAACTCAATTGTTATCGTTGGTGGTACCACAGATTGGCATCCAGTGACGA 1150
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 TCATTGTCAATAACTCAATTGTTATCGTTGGTGGTACCACGGATTGGCATCCAGTGACGA 1080
Query 1151 AAAGGCTTGTTCTTGTTGGAGAGATATTCCGGTTTCAGTTAGATACGTTGACTTGGTCTG 1210
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1081 AAAGGCTTGTTCTTGTTGGAGAGATTTTCCGGTTTCAGTTAGATACTTTGACTTGGTCTG 1140
Query 1211 TGATTGGACGGTTACCATACCGTGTCAAAACAGCGATGGCCGGATTCTGGAACGGTTATT 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGATTGGACGGTTACCATACCGTGTCAAAACAGCGATGGCCGGATTCTGGAACGGTTATT 1200
Query 1271 TGTACTTCACGTC-GGGACAGAGGGATAGAGGACCAGATAATCCACAGCCTGGGAAAGTT 1329
|||||||||| || ||| ||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 1201 TGTACTTCACATCAGGG-CAGCGGGATAGAGGACCGGATAATCCACAGCCCGGGAAAGTT 1259
Query 1330 ATTGGAGAAATGTGGAGAACCAAGTTGAAGTTTTGA 1365
||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATTGGAGAAATGTGGAGAACCAAGTTGAAGTTTTGA 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5