BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27230.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936457 jgi|Araly1|936457|scaffold_500648.1 1988 0.0
> Ahg936457 jgi|Araly1|936457|scaffold_500648.1
Length=1273
Score = 1988 bits (1076), Expect = 0.0
Identities = 1209/1274 (95%), Gaps = 5/1274 (0%)
Strand=Plus/Plus
Query 127 TCTCTTTCACTGCATTGAAGATGGGATCTGTATCTTTAAAGATCGGCGATGGAACAGCCA 186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCACTGCATTGAAGATGGGATCTGTATCTTTAAAGATCGGCGATGGAACAGCCA 60
Query 187 GATTCCGACGAACATCAATTTGTTCATCCGCCGTGAACCTCCTCATGCTCTTCTCCGTCG 246
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCCGACGAACATCAATTTGTTCCTCCGCCGTGAACCTCCTCATGCTCTTCTCCGTCG 120
Query 247 TCACCACAAATCTCTTCGCCTTATACGCGTTCTCCTCTCATTCCCAAGCAAACTCGCCAC 306
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 121 TCACCACAAATCTCTTCGCCTTATACGCGTTCTCTTCTCATTCCCAAGCTAATTCGCCAC 180
Query 307 TTCTCCACAGCTCCAACAATATCTCACTCGTTTCTCAACATCTCTCTTTGATTCTCCGAG 366
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTCACAATTCCAACAATATCTCACTCGTTTCTCAACATCTCTCTTTGATTCTCCGAG 240
Query 367 AAATCGATTCGTCTCAACGCAAGCTTGCTCAGATGGAGAAACAGATGCTTGGTTACGAAT 426
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATCGATTCGTCTCAACGTAAGCTTGCTCAGATGGAGAAACAGATGCTTGGTTACGAAT 300
Query 427 CTATTGATATCTCTCGACCTAACATTGTTCCTGAGCTCAAATTGTTCCTCCAGCGTCATC 486
|||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 301 CTATTGATCTCTCTCGACCTAATATTGTTCCTGAGCTCAAATTGTTCCTCCAACGTCATC 360
Query 487 AGCTTCCTTTAGGGAAAGATTCGCGTACCGGGATCACTGAAATGGTGTCTTCCGTTGGAC 546
||||||| || |||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 361 AGCTTCCGTTGGGGAAAGACTCGCGTACCGGGATCACTGAAATGGTGTCGTCTGTTGGAC 420
Query 547 ATTCTTGTGGGAAATCTACGGATTTGCTTTCTCAGTATATGTCATATAAGGTGTTTGATA 606
||||||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 ATTCTTGCGAAAAATCTGCGGATTTGCTTTCGCAGTATATGTCATATAAGGTGTTTGATA 480
Query 607 GATGTCCTGATGATTGGAGTCTTGGCCAGAAGTTGATTCTTCGTGCTTGTGAGCCGTTGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGTCCTGATGATTGGAGTCTTGGCCAGAAGTTGATTCTTCGTGCTTGTGAGCCGTTGC 540
Query 667 CGCGGAGACGGTGTTTGGCGAAAACGGTGCAGAAGCAAGATTTGAGTA-AGTCTCCTGAT 725
||||||| ||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 541 CGCGGAGGCGGTGTTTGGCGAAAACGGTGCAGAAGCAAGATCTGAGTCGA-TGGCCTGAT 599
Query 726 TCGTTATGGAGATCTGTTAGTAACAAGAGTGTTAATTGGAGTGGACTTGGTTGCAAGAGT 785
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGTTGTGGAGATCTGTTAGTAACAAGAGTGTTAATTGGAGTGGACTTGGTTGCAAGAGT 659
Query 786 TTTGATTGCTTGAAAGGTAAGAAACTTAGCAAGGAATGTGTTGGTTGTTTCGATTTAGGG 845
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 660 TTTGATTGCTTGAAAGGTAAGAAACTTAGCCGGGAATGCGTTGGTTGTTTCGATTTAGGT 719
Query 846 GTTGAGAAAGATAGGTTTGTGAAGGTTAAGGGGAAGAATGATTTCTTGATTGATGATGTG 905
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGAGAAAGATAGATTTGTGAAGGTTAAGGGGAAGAATGATTTCTTGATTGATGATGTG 779
Query 906 TTGGGTTTAGGAAGTGGGAAAATTCGAATCGGGTTCGATATTAGCGGTGGATCAGGGACT 965
||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||
Sbjct 780 TTGGGTTTAGGAAGTGGGAAAATCCGAATCGGGTTTGATGTTAGTGGTGGATCAGGGACT 839
Query 966 TTCGCAGCGAGAATGGCTGAGAAGAACGTGACTGTAATCACTAACACTTTGAATAATGGT 1025
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 840 TTCGCAGCGAGAATGGCTGAGAAGAACGTGACTATAATCACTAACACGTTGAATAATGGT 899
Query 1026 GCTCCGTTTAGTGAGTTTATAGCTGCGAGAGGGCTCTTTCCGTTGTTCTTGAGCTTAGAC 1085
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 900 GCTCCGTTTAGTGAGTTTATAGCCGCGAGGGGGCTTTTTCCGTTGTTCTTGAGTTTAGAC 959
Query 1086 CATAGATTTCCTTTTCTTGACAATGTGTTTGATCTTATTCATGCTTCTAGCGGATTAGAT 1145
|||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 960 CATAGATTTCCTTTCCTTGACAATGTGTTTGATCTCATCCATGCTTCAAGCGGATTAGAT 1019
Query 1146 GTTGAGGGTAAAGCGGAGAAGCTAGAGTTCT-TGATGTTCGATCTTGATCGGGTTTTGAA 1204
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 1020 GTTGAGGGTAAAGCGGAGAAGTTAGAGTT-TGTGATGTTCGATCTTGATCGGGTTTTGAA 1078
Query 1205 ACCCCGTGGATTGTTCTGGTTGGATAACTTCTATTGTGCTAATGATGAGAAGAAGAAAGA 1264
|||| |||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct 1079 ACCCGGTGGATTGTTCTGGTTGGATAACTTCTACTGCGCTAACGATGAAAAGAAGAAAGA 1138
Query 1265 ACTTACACGTATGATTGAGAGGTTTGGGTATAAGAAGCTTAAATGGGTTATTGGAGAGAA 1324
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 TCTTACACGTTTGATTGAGAGGTTTGGGTATAAGAAGCTTAAATGGGTCATTGGAGAGAA 1198
Query 1325 GGCTGATGCACAAGTTTATCTCTCAGCTGTTCTGCAAAAGCCAGTGAGAGCTTGATCGGG 1384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGCTGATGCACAAGTTTATCTCTCAGCTGTTCTGCAAAAGCCAGTGAGAGCTTGATCGG- 1257
Query 1385 AATGCAAAAGGAAG 1398
|| |||||||||||
Sbjct 1258 AAGGCAAAAGGAAG 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5