BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27240.1
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484506 jgi|Araly1|484506|fgenesh2_kg.5__498__AT3G27240.1 2254 0.0
Ahg947660 jgi|Araly1|947660|scaffold_703889.1 1125 0.0
> Ahg484506 jgi|Araly1|484506|fgenesh2_kg.5__498__AT3G27240.1
Length=1417
Score = 2254 bits (1220), Expect = 0.0
Identities = 1354/1419 (95%), Gaps = 7/1419 (0%)
Strand=Plus/Plus
Query 1 GCCGCTGTGTCATCGTGGAACTCCCATTTTCTCTCTTTTACTTGTTCGTTCCCAAACTCT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GCCGCTGTGTCATCGTGGAACTCCCATTTTCTCTCTTTTACTTCTTCGTTCCCAAACTCT 60
Query 61 TCTCCCTCGATCGTCTCCGTCGCCGATCTCGTTTCTTCATTTTCCGCGTGTTGATTGGTA 120
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 TCTCCCTCGATCGTCTCCGTCGCCGATCTCGTTGCTTCATTTTCCGCGAGTTGATTGGTA 120
Query 121 CAAAG-GTTTAATCAAATGGTTGGAGGAGGAGTTATCCAGCAAATTCTTAGGAGGAAGCT 179
||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CAAAGCG-TTAATCAAATGGTTGGAGGAGGACTTATCCAGCAAATTCTTAGGAGGAAGCT 179
Query 180 TCACTCCCAATCACTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGA 239
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCACTCTCAATCAGTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGA 239
Query 240 GGATGCTGGTTCTTCTGGTGTAAGAGCACTTGCCTTGTTGGGTGCTGGTGTTACAGGACT 299
||||||||| |||||||||||||||||||||||| | || |||||||||||||| |||||
Sbjct 240 GGATGCTGGCTCTTCTGGTGTAAGAGCACTTGCCCTATTTGGTGCTGGTGTTACTGGACT 299
Query 300 GTTGAGTTTTTCTACAGTAGCATCTGCTGATGAGGCTGAACATGGATTGGAGAGTCCAGA 359
|||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||
Sbjct 300 GTTGAGTTTTTCTACAGTTGCGTCTGCTGATGAAGCTGAACATGGATTGGAGTGTCCAGA 359
Query 360 GTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCGATCCGTCGTGG 419
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 360 CTACCCTTGGCCTCATGATGGCATTCTCAGCTCATATGATCATGCTTCGATCCGTCGTGG 419
Query 420 GCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCG 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 ACATCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCAATGTCTCTGATCTCTTACCG 479
Query 480 AGACTTGGTGGGTGTCGCCTACACAGAGGAAGAGGCAAAGGCAATGGCAGCTGAAATCGA 539
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 AGATTTGGTGGGTGTTGCCTACACAGAGGAAGAAGCAAAGGCAATGGCAGCTGAAATCGA 539
Query 540 GGTAGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGTAAACTCAGTGA 599
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GGTTGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGTCCTGGTAAACTCAGTGA 599
Query 600 CCGGTTTCCTCAGCCATA-TGCAAATGAATCAGCTGCAAGGTTTGCTAATGGTGGAGCGT 658
|||||||||| | ||||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 600 CCGGTTTCCTGAACCATACT-CGAATGAATCAGCTGCAAGGTTTGCTAATGGGGGAGCGT 658
Query 659 ATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAATGGTCCAAACTATGTCTTTG 718
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 659 ATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAACGGTCCTAATTATGTCTTTG 718
Query 719 CGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGATTAGAGAGGGGTTACACT 778
| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 719 CTCTTCTGACTGGTTACCGTGATCCGCCTGCTGGCATTTCAATTAGAGAGGGGTTACACT 778
Query 779 ACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTG 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 ACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAGATGCTCAATGATGAAGCTG 838
Query 839 TTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCAT 898
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGAGTATGAGGATGGTGTCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCAT 898
Query 899 TCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGATGGGTTTCAAATGGA 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 899 TCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAATTGATGGGTTTCAAATGGA 958
Query 959 TATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTTACTACAGGCGACTAAAATGGTCGG 1018
|||||||||| ||||| ||||| |||||||| || || ||||||||||| ||||||||||
Sbjct 959 TATTCCTACTATCTCTTGCTCTGCTCCAAGCAGCCTATTACAGGCGACTGAAATGGTCGG 1018
Query 1019 TTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAAAGCGCCGCTGAAAAGCTTT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 TTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAAAGCGCCGCTCAAAAGCTTT 1078
Query 1079 TGCATTGGCCTGGCCACACACAGTCGTATTTTCAACAAAGGATGTTAAATAGAGAAGAGC 1138
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1079 TGCATTGGCCTGGCCACACACAGTCGTATTTTCAACTATGGATGTTAAATAGAGAAGAGC 1138
Query 1139 CTTTCTCTGGGTAATAACGTATCATCATTTTTATGTGTCATAAAAATCTTTGATGAGACC 1198
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTTTCTCTAGGTAATAACGTATCATCATTTTTATGTGTCATAAAAATCTTTGATGAGACC 1198
Query 1199 AGTTCTCACCTGAAGG-TGAAAAGACCTCATCGTTCTTCTTTTTCCTTCGATTATTACT- 1256
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGTTCTCACCTGACGGGTGAAAAGACCTCATCGTTCTTCTTTTTCCTTCGATTATTACTT 1258
Query 1257 AGAGAGTTTTATGAGGATAATCACGAAAACTTGtttttttCGCCTCATAATAATCACACA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAGAGTTTTATGAGGATAATCACGAAAACTTGTTTTTTTCGCCTCATAATAATCACACA 1318
Query 1317 TGATTTTGAGATTATATCATTTGTTATGTTTTTCCTCTTGTCTCAATAAAAAATAACTTT 1376
|||||||||||| |||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 1319 TGATTTTGAGATCATATCATTTGTTATGTTTTTTCGCTCGTCTCAATAAAGAATAACTTT 1378
Query 1377 GTACTCTGAT-TTTGTTGTCTATTTTCGGCATTTCTTGC 1414
|||||||||| ||||| ||||||||||||||||||||||
Sbjct 1379 GTACTCTGATATTTGTGGTCTATTTTCGGCATTTCTTGC 1417
> Ahg947660 jgi|Araly1|947660|scaffold_703889.1
Length=965
Score = 1125 bits (609), Expect = 0.0
Identities = 841/953 (88%), Gaps = 16/953 (2%)
Strand=Plus/Plus
Query 115 TTGG-TACAAAG-GTTTAATCAAATGGTTGGAGGAGGAGTTATCCAGCAAATTCTTAGGA 172
|||| ||| ||| |||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1 TTGGTTAC-AAGTGTTT-ATCAAATGGTTGGAGGAGGAGTTATCCAGCAGCTTCTTAGAA 58
Query 173 GGAAGCTTCACTCCCAATCACTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAG 232
|||| ||||| ||||||||| | ||||||||||| ||||| ||||| |||||||||||||
Sbjct 59 GGAAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTATCTTCGAAGAAAG 118
Query 233 CTCATGAGGATGCTGGTTCTTCTGGTGTAAGAGCACTTGCCT-TGTTGGGTGCTGGTGTT 291
|| |||| |||||||| ||| ||||| |||||||| ||| || | ||||||||||| ||
Sbjct 119 CTAATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTG-CTCTCATGGGTGCTGGTATT 177
Query 292 ACAGGACTGTTGAGTTTTTCTACAGTAGCATCTGCTGATGAGGCTGAACATGGATTGGAG 351
|||||| | |||||||||||||| || ||||| ||||||||||| |||||||| ||||||
Sbjct 178 ACAGGATTATTGAGTTTTTCTACTGTTGCATCCGCTGATGAGGCCGAACATGGTTTGGAG 237
Query 352 AGTCC-AGAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCGAT 410
|||| | | ||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 238 TGTCCTA-ACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGAT 296
Query 411 CCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGAT 470
||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 297 CCGTCGTGGTCACCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCGATGTCTCTGAT 356
Query 471 CTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAGGAAGAGGCAAAGGCAATGGCAGC 530
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 357 CTCATACCGAGACTTGGTTGGTGTTGCCTACACAGAGGAAGAGGCTAAGGCAATGGCAGC 416
Query 531 TGAAATCGAGGTAGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGTAA 590
|||||| ||||| || |||||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 417 TGAAATTGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTTACCAGACCTGGTAA 476
Query 591 ACTCAGTGACCGGTTTCCTCAGCCATATGCAAATGAATCAGCTGCAAGGTTTGCTAATGG 650
||||||||| ||| ||||| | |||||| |||||||||||||||||||||| || |||||
Sbjct 477 ACTCAGTGATCGGCTTCCTGAACCATATTCAAATGAATCAGCTGCAAGGTTCGCCAATGG 536
Query 651 TGGAGCGTATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAATGGTCC-AAACT 709
||||||||||| ||||||||||||||| | |||||||||||||||||||| || ||| |
Sbjct 537 AGGAGCGTATCCACCTGATCTAAGTCTTGTTACTAAGGCACGTCACAATGG-CCAAAATT 595
Query 710 ATGTCTTTGCGCT-TCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGATTAGAGAG 768
|||||||||| || | ||||||||||||||||||| || ||||| || ||||| ||||||
Sbjct 596 ATGTCTTTGCTCTGT-TGACTGGTTACCGTGATCCTCCAGCTGGAATTTCGATCAGAGAG 654
Query 769 GGGTTACACTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAA-ATGCTCAA 827
||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||
Sbjct 655 GGGTTACACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCC-AAAGATGCTCAA 713
Query 828 TGATGAAGCTGTTGAGTATGAAGATGGTG-TCCCCGCCACAGAGGCACAGATGGGTAAAG 886
||||||||||| || ||||||||||| ||| || ||||| |||||||||||||| |
Sbjct 714 CGATGAAGCTGTGGAATATGAAGATGGAACTCCA-GCAACAGAAGCACAGATGGGTAAGG 772
Query 887 ATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGATGG 946
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 773 ATGTTGTATCATTCTTGTCCTGGGCAGCTGAACCAGAAATGGAAGAGAGAAAATTGATGG 832
Query 947 GTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTTACTACAGGCGAC 1006
||||||||||||||||| |||| ||| | ||||| || |||||||| || |||||| |||
Sbjct 833 GTTTCAAATGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGAC 892
Query 1007 TAAAATGGTCGGTTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAA 1059
| |||||||| || ||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct 893 TGAAATGGTCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTCAACTAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5