BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27250.1
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484507 jgi|Araly1|484507|fgenesh2_kg.5__499__AT3G27250.1 1531 0.0
> Ahg484507 jgi|Araly1|484507|fgenesh2_kg.5__499__AT3G27250.1
Length=1143
Score = 1531 bits (829), Expect = 0.0
Identities = 1081/1193 (91%), Gaps = 56/1193 (5%)
Strand=Plus/Plus
Query 1 AGACACACagaaagactatagagaaagagagagaaagaaagaaagaaaa-a--gagtgag 57
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1 AGACACACAGAAAGACTATAGAGAAAGAGAGAGAAAGAAAGAAAGAAAAGAGTGAGAGAG 60
Query 58 agtgtttgatgata-agagagaaagataaaaaaTGGATCAAGATGACTGGTTGGGAACGC 116
|||||||||| | | |||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 61 AGTGTTTGAT-A-AGAGAGAGAAAGAT-AAAAATGGATCAAGATGAGTGGTTGGGAACGC 117
Query 117 TAAGATACGCCGGTAAGGCGCAGGATAAAGTTTCCGTTGACGCTCTCATGCTCCGGTACC 176
||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 118 TAAGATA---C------GCGCAGGATAAAGTTTCCGTCGACGCTCTCATGCTCCGGTACC 168
Query 177 GTCCGATCGCTCCAAAGCCGACGACTGGTCAGCCATGTGGTGT-GGCAGATAACAACAAC 235
|||| |||||||| |||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 169 GTCCCATCGCTCCGAAGCCGACGACTGGTCAGTCATGTGGTGTAGG-AGATAACAACAAC 227
Query 236 AATAGCTCATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 295
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AACAACTTATACGGTATGAGCAAACGAACCAAACGAAAGTACGTTAGGGTTTCGAAGAAT 287
Query 296 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AATAAAGGCACGTGTCGAGGTAAGAGCAGATCTGACTTGTCTGATGATCGGGAACAAACT 347
Query 356 GATGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GAAGTCGTGACGTTGCAACTCTTGCCGGAAAAATCAGATATTTCCGGTGAGTACTCGCCG 407
Query 416 TTGGATCAAGATAGTCTCGATCCGTCGGTGAAATCGATAATCGGAGAGGAAACACAAGAA 475
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 408 TTGGATCAGGATAGTCTCGATCCATCGGTGAAAACGATAATCGGAGAGGAAACACAAGAA 467
Query 476 ACCAACACGTGGGGTATGTTTAACGGCAGCGTCACGGCGGAGATGGAGACGTGGGTGACG 535
||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 468 ACCAACATGTGGGGTACGTTTAACGGCGGCGTCACGGCGGATATGGAGACGTGGGTTACG 527
Query 536 GTGGAGTCCGTCACAAGCGTGTGTGAGGGTAGTTTGAGTTCCCATGCGGTGGGGATTACG 595
|||||||| |||||||| || ||||| |||| |||||||||||||||||||||| |||||
Sbjct 528 GTGGAGTCTGTCACAAGTGTTTGTGATGGTATTTTGAGTTCCCATGCGGTGGGGTTTACG 587
Query 596 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGC 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GACGTTGAGATCGTTGATAATCTTGGTAAGGACACGTGTCCAGCGTTCGTATCGGATGGT 647
Query 656 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGAAATGTTTCCGGTGATGATTCA 715
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 648 TCGAACCGTGTGGTGTGGGTCAACGAGGCTTACCGGAGGAATGTTTCCGGTGATGATTCA 707
Query 716 ACGGCGTCAGTATCGCCGGAAGTTGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 775
||| || || || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 708 ACGTCG---GTGTCCCCGGATGTCGTGGTGTGGTTGGTGGCGGAGGAGGCAACGGCGGCG 764
Query 776 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ATGCATTGTAACTACCAAGCTTTCACGTGTAGGGTGAGGATGCAATACACGTGGAAGGAA 824
Query 836 ACAAAGTATACCAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGTTTTGCA 895
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 825 ACAAAGTATACAAAAACGGTGCCGTGTGATGTGTGGAAAATGGAGTTTGGTGGCTTTGCA 884
Query 896 TGGAGGCTAGACACAACAGCTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCAAGTA 955
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 885 TGGAGGCTAGACACAACAACTGCTCTGACTCTCTGGCTTTGATGGTGATTGCTGCGAG-A 943
Query 956 -ACATGCGGGTAAGATTGTTAAGATATGTGATTTTAGTGTGTGACTAATCACAAAATTAG 1014
||||| |||||||||| ||| ||||||||||||| ||||| ||||| ||| || |
Sbjct 944 CACATGAGGGTAAGATTACCAAGCTATGTGATTTTAGAGTGTGTCTAATG-CAACTTT-G 1001
Query 1015 TAATCGCTTCAAGCGCAACTTTGTTTAGACGAGTAAGAAGGAAGCAAATGATGCTAATGT 1074
| | | | | | || || |||||||||| ||||||||||||||||
Sbjct 1002 T--T---T--A-G---A-CT------AG-----TAAGAAGGAAACAAATGATGCTAATGT 1038
Query 1075 TGAAAGAAGTGTGGAGGAGCCGGAAAGCTTAAATATATAGAACATATAGTAATAATGTCA 1134
|| ||||||| |||| ||| |||||||||||||||||| | ||||||||||||
Sbjct 1039 TGGAAGAAGTATGGAAAAGCTGGAAAGCTTAAATATATAC--C-----GTAATAATGTCA 1091
Query 1135 TATTTTTATTGGCAAAGACTAAACAAAAATATGCCATTGTATGGTTTCATACC 1187
||| ||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1092 TATATTTATTGGCAAAGACTAAATAAAAG-ATGCCATTGTATGGTTTCGTACC 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44298829554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5