BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27260.1 Length=3137 Score E Sequences producing significant alignments: (Bits) Value Ahg484508 jgi|Araly1|484508|fgenesh2_kg.5__500__AT3G27260.1 4514 0.0 > Ahg484508 jgi|Araly1|484508|fgenesh2_kg.5__500__AT3G27260.1 Length=3002 Score = 4514 bits (2444), Expect = 0.0 Identities = 2849/3040 (94%), Gaps = 46/3040 (2%) Strand=Plus/Plus Query 100 AAATCTTCTACTTCGTCCCGTGTTTGTGGATTGGTTCACGGATCTTTGGAGATTCCGAAA 159 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATCTTCTACTTTGTGCCGTGTTTGTGGATTGGTTCACGGATCTTTGGAGATTCCGAAA 60 Query 160 TTGGAGGCGATTTTTATTCTAGGGTTTCGGTGAAATTTGTACCGTTTTTTGGATTAATTC 219 |||| ||||||||||||||||||||||| ||| || || | | | |||| |||||| Sbjct 61 TTGGGGGCGATTTTTATTCTAGGGTTTCTGTG-AA-TT-T--C----TCTGGAATAATTC 111 Query 220 TTACGTTGATCGCTTCTCTCCTGGCGAGCTCGCGTTTAAAGGTTTAGATTTCAAGCTCCG 279 || |||||||||| ||||| |||| ||||| | | |||||||||||||| Sbjct 112 TTCCGTTGATCGCATCTCTTCTGGTGAGCT--C--------G----GATTTCAAGCTCCG 157 Query 280 TGTTGTCT-ATTTTGAAGCTAATTTATCTGGTGGAGGTTGAATTTTGGTTTGTGAAGAAT 338 |||||||| | |||||||||| ||||| ||| ||||||||||||||||||||||||| | Sbjct 158 TGTTGTCTGA-TTTGAAGCTACTTTATGTGGAGGAGGTTGAATTTTGGTTTGTGAAG-A- 214 Query 339 TTGTGTGGATTCAGCTGTT-GGAGATTCAAATGGTGTCTTGCAAATGAGTTGTAGAAGCT 397 |||||||| || |||||||||||||||| || ||||||||||| |||||||| Sbjct 215 --------ATTCAGCT-TTAGGAGATTCAAATGGTGGCTAGCAAATGAGTTATAGAAGCT 265 Query 398 AGTGAGAATTATATATATTGTGGTAAGTCTTGCCAAAACAATGGTTGAAAGTGCTGCGTT 457 |||||||||||||| | || ||||| ||||| ||||| |||||||||||||||||||| Sbjct 266 AGTGAGAATTATATCT-GTG-GGTAATTCTTGTTAAAACGATGGTTGAAAGTGCTGCGTT 323 Query 458 CCCAGGAGGGTATTATCGGAATACTTTTGAAGCGCCTGAGGAATCAGAGGGCTCTGGGAG 517 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 324 CCCGGGAGGGTATTATCGGAATACTTTTGAAGCGCCTGATGAATCAGAGGGCTCTGGGAG 383 Query 518 CTCTGCACAGATTGATACTGAGGTCACTGCGTCTGAGAATTCAAGTACTCCTGCACGGAA 577 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 384 CTCTGCACAGATTGATACTGAGGTCACTGCGTCTGAGAATTCAAGCACTCCTGCAAGAAA 443 Query 578 GTGTATTATGTTGAATTCGAATGATGAAGATCCTTATGGTGTTCAGAGACAAGTCATTTC 637 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GTGTATTATGTTGAATTCTAATGATGAAGATCCTTATGGTGTTCAGAGACAAGTCATTTC 503 Query 638 CTTGTATAACATGTCACAATCTGAGAGGAAGGATTTGATTTATCGGCTTAAGCTGGAGTT 697 ||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| | Sbjct 504 CTTGTATAATATGTCACAATTTGAGAGGAAGGATTTGATTTATCGGCTTAAGTTGGAGCT 563 Query 698 GGAGCAGACAAAGATAGTTCTTAAAAATGCTGAGTTGCAGAGAATGAACCCTGCTGCTGT 757 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 564 GGAGCAGACAAAGATAGTTCTTAGAAATGCTGAGTTGCAGAGGATGAACCCTGCTGCTGT 623 Query 758 GTCGTCTACTAGTGATAGGGTGGGTTTTAGCACTGGTCAAAAGATATCATCTCGAGTCAG 817 ||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||| Sbjct 624 GTCGTCTACTAGTGATAGGGTGGGTTTTAGCACTGCTCAAAAGCTGTCTTCTCGAGTCAG 683 Query 818 CAATTCGAAGAAACCATCTGATTTTGCTGTGGGTTCGGGGAAGAAAGTTCGGCATCAGAA 877 |||||||||||| |||||||||||||| |||| || |||||||||||||||||||||| Sbjct 684 CAATTCGAAGAAGCCATCTGATTTTGCAATGGGATCAGGGAAGAAAGTTCGGCATCAGAC 743 Query 878 TGGGACTTCTCGTGGATGGAATCGTGGTACCTCAGGGAAGTTTGAGTCTTCGAAAGAGAC 937 ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 744 TGGGAGTTCCCGTGGATGGAATCGTGGTACCTCGGGGAAGTTTGAGTCTTCGAAAGAGTC 803 Query 938 TATGACTAGCACTCCTAACATTACACTGATGAAGCAATGTGACACGCTACTGAGAAAACT 997 ||||||||||||| |||| ||||||||||||||||||||||| |||||| ||| |||||| Sbjct 804 TATGACTAGCACTACTAATATTACACTGATGAAGCAATGTGATACGCTATTGAAAAAACT 863 Query 998 GTGGTCTCATCCGCATTCTTGGGTGTTTCAGGCGCCAGTTGATGTAGTGAAACTGAACAT 1057 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 864 GTGGTCTCATCCGCATTCTTGGGTTTTTCAGGCGCCAGTTGATGTAGTGAAACTGAACAT 923 Query 1058 ACCTGACTATCTCACTACTATCAAGCATCCCATGGACTTAGGGACAGTAAAGAAGAACTT 1117 ||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 924 ACCTGACTATCTCACTATTATCAAACATCCCATGGACTTGGGGACAGTAAAGAAGAACTT 983 Query 1118 AGCGTCTGGTGTATACTCAAGCCCACATGAGTTTGCTGCTGATGTGAGGCTTACATTTAC 1177 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 984 AGCATCTGGTGTATACTCAAGCCCACATGAGTTTGCTGCAGATGTGAGGCTTACATTTAC 1043 Query 1178 CAATGCGATGACATATAACCCTCCAGGACATGATGTTCACATTATGGGGGATATCCTTAG 1237 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 CAATGCAATGACATATAACCCTCCAGGACATGATGTTCACATTATGGGGGATATCCTTAG 1103 Query 1238 TAAATTATTTGAAGCGCGGTGGAAAACTATCAAAAAGAAATTACCACCTTGTAGCATGCA 1297 ||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||| Sbjct 1104 TAAATTATTTGAAGCGCGGTGGAAAACTATCGAAAAGAAATTACCAGCTTGTAACATGCA 1163 Query 1298 AACGTTGCCTGCAGTAACATTGGAGCCCAATGATGAAAGGAAAGCTGCTATATCTGTACC 1357 ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| || Sbjct 1164 AACGTTGCCTGCAATATCATTGGAGCCCAATGATGAAACGAAAGCTGCTATATCTGTCCC 1223 Query 1358 TCCGGCGAAGAAGAGAAAGATGGCTTCACCCGTTAGAGAGAGTGTTCCAGAACCGGTGAA 1417 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1224 TCCAGCGAAGAAGAGAAAGATGGCTTCACCCATTAGAGAGAGTGTTCCAGAACCCGTGAA 1283 Query 1418 GCCACTTATGACAGAAGTGGAGAGGCATAGATTGGGCAGACAACTCGAATCACTACTCGA 1477 |||||||||||| | || ||||||||||||||||||||||||||||||||||||||| || Sbjct 1284 GCCACTTATGACTGCAGAGGAGAGGCATAGATTGGGCAGACAACTCGAATCACTACTAGA 1343 Query 1478 CGAACTTCCTGCACATATCATTGACTTCTTGAAGAAACACAATTCAAATGGCGGAGAAAT 1537 ||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||| Sbjct 1344 CGAACTTCCTGCACATATCATTGACTTTTTGAGGAAACACAGTTCAAATGGAGGAGAAAT 1403 Query 1538 TGCAGAAGACGAAATTGAGATAGACATTGATGTTCTCAGTGATGAAGTACTGGTCACTCT 1597 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1404 TGCGGAAGACGAAATTGAGATAGACATTGATGTTCTCAGTGATGAAGTACTGGTCACTCT 1463 Query 1598 TCGAAACCTTCTAGATGAATATATACAAAACAAAGAAGCAAAGCAGACGAATGTTGAACC 1657 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1464 TCGAAACCTTCTAGATGAATATATACAAAATAAAGAAGCAAAGCAGTCGAATGTTGAACC 1523 Query 1658 ATGTGAAATAGAGCTTATTAATGGATCACGACCGAGCAATTCGTCGCTGCAAAGAGGAAA 1717 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1524 ATGTGAAATAGAGCTTATTAATGGATCAGGACCGAGCAATTCGTCGCTGCAACGAGGAAA 1583 Query 1718 TGAAATGGCTGATGAGTATGTCGATGGGAATGAACCGCCTATCTCAAGGAGCTCCAGTGA 1777 |||| | |||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1584 TGAATTAGCTGATGAGTATGTCGGTGGGAATGAACCTCCTATCTCAAGGAGCTCCAGTGA 1643 Query 1778 TTCGGATTCTGGTAGCTCGGAAGATCAATCTGATGACGCTAAACCCATGGTTCAAGGGGA 1837 |||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1644 TTCGGACACTGGTGGCTCAGAAGATCAATCTGATGATGCTAAACCCATGGTTCAAGAGGA 1703 Query 1838 TTCTTCCAAGATGCCTGAAACTGCAAACTCTGAGGCGCAAAGAGATGAAAATACAAGAAT 1897 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1704 TTCTTCCAAGATGCCTGAAACTGCAAATTCTGAGGCGCAAAGAGATGAAAATACAAGAAT 1763 Query 1898 TGATGATCTTTTTGTTGGGAGTCAATCTACTGGTGCGCTTG-AGCAGATGGATATTTGTT 1956 | ||||||||||| || |||||||||||||||||| ||| |||||||||||||||||| Sbjct 1764 TTCTGATCTTTTTGAAGGAAGTCAATCTACTGGTGCG-TTGGAGCAGATGGATATTTGTT 1822 Query 1957 CTCAGCAAAAGCTTAGTTCTGATGAATCAGATGGCCAACATGAGGGAAATATATTAGAGA 2016 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1823 CTCAGCAAAAGCCTAGTTCTGATGAATCAGATATCCAACATGAGGGAAATATATTAGAGA 1882 Query 2017 CTCCAGCTTCATCTGAGAAGCGCTATAGAGCTGCGCTGTTGAAGAACCGGTTTGCAGATA 2076 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1883 CTCCAGTTTCATCTGAGAAGCGCTATAGAGCTGCGTTGTTGAAGAACCGGTTTGCAGATA 1942 Query 2077 TCATTCTAAAAGCACGAGAGAAACCACTTCCACAGAATGGTATTAAGGGCGATCCagaaa 2136 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1943 TCATTCTAAAAGCACGCGAGAAACCTCTTCCACAGAATGGTATTAAGGGCGATCCAGAAA 2002 Query 2137 ggctgcgtaaagaaagagaagaactcgtactgcagaagaagaaagagaaagCGCGTCTAC 2196 ||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |||| Sbjct 2003 GGCTGCGTAAAGAAAGAGAAGAACTCGAATTGCAGAAGAAGAAAGAAAAAGCGCGACTAC 2062 Query 2197 AAGCTGAAGCAGAGGCTGCTGAAGATGCTCGTCGCCAAGCTGAAGCAGAAGCCGCTGCAG 2256 ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2063 AAGCTGAAGCAAAGGCTGCTGAAGATGCTCGTCGCCAAGCTGAAGCAGAGGCCGCTGCAG 2122 Query 2257 AAGCTGCTGCTGAGGCTAAGCGGAAGAGAGAACTCGAAAGAGAAGCCGCTCGCCAAGCTT 2316 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2123 AAGCTGCTGCTGAGGCTAAGCGGAAGAGAGAACTCGAAAGAGAAGCCGCTCGTCAAGCTT 2182 Query 2317 TATTGAAGATGGAGAAAACTGTAGAGATTAATGAGAACTCACGGTTTCTCGAGGACCTAG 2376 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2183 TATTGAAGATGGAGAAAACTGTAGAGATCAATGAGAACTCACGGTTTCTCGAGGACCTAG 2242 Query 2377 AGATGCTGAGTTCGAGTGCACCTGAGCAATTACCAAGCTCAGCCGAAGAAACCAGCCCCG 2436 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 2243 AGATGCTGAGTTCGAGTGCACCTGAGCAATTACCAAGCTCAGCAGATGAAACCAGCCCCG 2302 Query 2437 AGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGCAACCCACTTGAGCAAC 2496 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2303 AGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGTAACCCTCTTGAGCAAC 2362 Query 2497 TCGGACTGTACATGAAACAAGATGATGATGAAGAAGAGCCCGAAGCTCCTGCTGTTCCAA 2556 ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| Sbjct 2363 TCGGACTGTACATGAAACAAGATGATGATGAAGAAGAACCCGAAGCTCATGCGGTTCCAA 2422 Query 2557 AACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAAACTCGGAG 2616 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2423 AACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCGGAG 2482 Query 2617 AATGTAATCCGCTGGAGCAACTTGGACTGTACATGAAACAAGACGACGGTGAAGAAGAAG 2676 || |||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||| Sbjct 2483 AAAGTAACCCTCTGGAGCAACTCGGACTGTACATGAAACAAGACGACGATGATGAAGAAG 2542 Query 2677 AACCCGAGGCTCCTGTGGTTCCAAAACCCAATGAAACCAGCCTCGAGAGACCTGTAGACG 2736 ||||||||||||||| | ||||||||||| |||||||||||| |||||||||| |||||| Sbjct 2543 AACCCGAGGCTCCTGCGTTTCCAAAACCCGATGAAACCAGCCCCGAGAGACCTTTAGACG 2602 Query 2737 CATTTGGAAGTTTCAACCTCAAAGGAAGTA--A-CCCTCTTGAGCAACTCGGACTGTACA 2793 ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| Sbjct 2603 CATTTGGAAGTTTCAACATCAAAGGAAGTAGTAACCCTCTTGAGCAACTCGGACTGTACA 2662 Query 2794 TGAAACAAGACGATGATGAAGAAGAACCCGAGGCTCCCGCTGTTCCAAACCTAGCCAACG 2853 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 2663 TGAAACAAGACGATGATGAAGAAGAACACGAGGGTCCCGCTGTTCCAAACCTAGCCAACG 2722 Query 2854 ACGTGGAAGAAGGTGAAATCGATTGA-ACAAAAGAAGTGTATAAAATATATACATGTATT 2912 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2723 ACGTGGAAGAAGGTGAAATCGATTGATACAAAAGAAGTGTATAAAATATATACATGTATT 2782 Query 2913 ATATATAAAACAATAGCCAGGGCAGGTACAAACAGACGCAAGAAATGAAGGTCTTAGCCC 2972 |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 2783 ATATATAAAACAGTAGCCAGGGCAGGTACACACAGACGCAGGAAATGAAGGTCTTAGCCC 2842 Query 2973 TTCTTAAGAGAAGATCCAATATGTGGCTCATTGTTTAATGAGTTTTGGAATGGATCTCTC 3032 ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 2843 TTCTTAAGAGAAGGTCCAATCTTTGGCTCATTGTTTAATGAGTTTTGGAATGGATCTCTC 2902 Query 3033 TTAAGCCAGTGTGGT-GTTTAATTATGTAAAACACAAAGCAAACGCTTAGAAGCTTTTTG 3091 ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 2903 TTAAGCCAGTGTGGTTGTTAAATTATGTAAAACACGAAGCAAACGCTTAGAAGCTTTTTG 2962 Query 3092 CCACGAGACTTCATGAAGAGTCCCTTAGTGTATGATTATT 3131 || ||||||||||||||||||||||||||||||||||||| Sbjct 2963 CCTCGAGACTTCATGAAGAGTCCCTTAGTGTATGATTATT 3002 Score = 337 bits (182), Expect = 4e-91 Identities = 254/287 (89%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 2562 GATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAAACTCGGAG-AATG 2620 |||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| || | Sbjct 2287 GATGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAA-G 2345 Query 2621 TAATCCGCTGGAGCAACTTGGACTGTACATGAAACAAGACGACGGTGAAGAAGAAGAACC 2680 ||| || || |||||||| |||||||||||||||||||| || ||| ||||||||||| Sbjct 2346 TAACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGATGA---TGATGAAGAAGAACC 2402 Query 2681 CGAGGCTCCTGTGGTTCCAAAACCCAATGAAACCAGC-CTCGAGAGACCTGTAGACGCAT 2739 ||| |||| || |||||||||||| ||||||||||| | |||||||||| |||||||| Sbjct 2403 CGAAGCTCATGCGGTTCCAAAACCTGATGAAACCAGCAC-CGAGAGACCTTTAGACGCAC 2461 Query 2740 TTGGAAGTTTCAACCTCAAAGGAAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAAC 2799 ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| Sbjct 2462 TTGGAAGTTTCAACCTCGGAGAAAGTAACCCTCTGGAGCAACTCGGACTGTACATGAAAC 2521 Query 2800 AAGACGA---TGATGAAGAAGAACCCGAGGCTCCCGCTGTT-CCAAA 2842 ||||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 2522 AAGACGACGATGATGAAGAAGAACCCGAGGCTCCTGC-GTTTCCAAA 2567 Score = 311 bits (168), Expect = 2e-83 Identities = 250/287 (87%), Gaps = 15/287 (5%) Strand=Plus/Plus Query 2424 GAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGCAAC 2483 ||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||| Sbjct 2431 GAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCGGAGAAAGTAAC 2490 Query 2484 CCACTTGAGCAACTCGGACTGTACATGAAACAAGATGA---TGATGAAGAAGAGCCCGAA 2540 || || ||||||||||||||||||||||||||||| || |||||||||||| ||||| Sbjct 2491 CCTCTGGAGCAACTCGGACTGTACATGAAACAAGACGACGATGATGAAGAAGAACCCGAG 2550 Query 2541 GCTCCTGCTGTT-CCAAAACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGG 2599 |||||||| ||| |||||||| |||||||||||| |||||||||||||||||||| |||| Sbjct 2551 GCTCCTGC-GTTTCCAAAACCCGATGAAACCAGCCCCGAGAGACCTTTAGACGCATTTGG 2609 Query 2600 AAGTTTCAA-ACTCGGAG-AA-T-GTAATCCGCTGGAGCAACTTGGACTGTACATGAAAC 2655 ||||||||| | || || || | |||| || || |||||||| |||||||||||||||| Sbjct 2610 AAGTTTCAACA-TCAAAGGAAGTAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAAC 2668 Query 2656 AAGACGACGGTGAAGAAGAAGAACCCGAGGCTCCTG-TGGTTCCAAA 2701 ||||||| ||| |||||||||| ||||| ||| | || ||||||| Sbjct 2669 AAGACGA---TGATGAAGAAGAACACGAGGGTCCCGCTG-TTCCAAA 2711 Score = 202 bits (109), Expect = 1e-50 Identities = 130/140 (93%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 2707 ATGAAACCAGCCTCGAGAGACCTGTAGACGCATTTGGAAGTTTCAACCTCAAAGGAAGTA 2766 |||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct 2288 ATGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGTA 2347 Query 2767 ACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGACGATGATGAAGAAGAACCCGAGG 2826 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2348 ACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGATGATGATGAAGAAGAACCCGAAG 2407 Query 2827 CTCCCGCTGTTCCAAA-CCT 2845 ||| || |||||||| ||| Sbjct 2408 CTCATGCGGTTCCAAAACCT 2427 Score = 178 bits (96), Expect = 2e-43 Identities = 130/146 (89%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 2419 CCGAAGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGG-A 2477 |||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | Sbjct 2570 CCGATGAAACCAGCCCCGAGAGACCTTTAGACGCATTTGGAAGTTTCAACATCAAAGGAA 2629 Query 2478 --AGCAACCCACTTGAGCAACTCGGACTGTACATGAAACAAGATGATGATGAAGAAGAGC 2535 || ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 2630 GTAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGACGATGATGAAGAAGAAC 2689 Query 2536 CCGAAGCTCCTGCTGTTCCAAAACCT 2561 ||| | ||| ||||||||||| ||| Sbjct 2690 ACGAGGGTCCCGCTGTTCCAAA-CCT 2714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118498752195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5