BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27260.1
Length=3137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484508 jgi|Araly1|484508|fgenesh2_kg.5__500__AT3G27260.1 4514 0.0
> Ahg484508 jgi|Araly1|484508|fgenesh2_kg.5__500__AT3G27260.1
Length=3002
Score = 4514 bits (2444), Expect = 0.0
Identities = 2849/3040 (94%), Gaps = 46/3040 (2%)
Strand=Plus/Plus
Query 100 AAATCTTCTACTTCGTCCCGTGTTTGTGGATTGGTTCACGGATCTTTGGAGATTCCGAAA 159
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCTTCTACTTTGTGCCGTGTTTGTGGATTGGTTCACGGATCTTTGGAGATTCCGAAA 60
Query 160 TTGGAGGCGATTTTTATTCTAGGGTTTCGGTGAAATTTGTACCGTTTTTTGGATTAATTC 219
|||| ||||||||||||||||||||||| ||| || || | | | |||| ||||||
Sbjct 61 TTGGGGGCGATTTTTATTCTAGGGTTTCTGTG-AA-TT-T--C----TCTGGAATAATTC 111
Query 220 TTACGTTGATCGCTTCTCTCCTGGCGAGCTCGCGTTTAAAGGTTTAGATTTCAAGCTCCG 279
|| |||||||||| ||||| |||| ||||| | | ||||||||||||||
Sbjct 112 TTCCGTTGATCGCATCTCTTCTGGTGAGCT--C--------G----GATTTCAAGCTCCG 157
Query 280 TGTTGTCT-ATTTTGAAGCTAATTTATCTGGTGGAGGTTGAATTTTGGTTTGTGAAGAAT 338
|||||||| | |||||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct 158 TGTTGTCTGA-TTTGAAGCTACTTTATGTGGAGGAGGTTGAATTTTGGTTTGTGAAG-A- 214
Query 339 TTGTGTGGATTCAGCTGTT-GGAGATTCAAATGGTGTCTTGCAAATGAGTTGTAGAAGCT 397
|||||||| || |||||||||||||||| || ||||||||||| ||||||||
Sbjct 215 --------ATTCAGCT-TTAGGAGATTCAAATGGTGGCTAGCAAATGAGTTATAGAAGCT 265
Query 398 AGTGAGAATTATATATATTGTGGTAAGTCTTGCCAAAACAATGGTTGAAAGTGCTGCGTT 457
|||||||||||||| | || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 266 AGTGAGAATTATATCT-GTG-GGTAATTCTTGTTAAAACGATGGTTGAAAGTGCTGCGTT 323
Query 458 CCCAGGAGGGTATTATCGGAATACTTTTGAAGCGCCTGAGGAATCAGAGGGCTCTGGGAG 517
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 324 CCCGGGAGGGTATTATCGGAATACTTTTGAAGCGCCTGATGAATCAGAGGGCTCTGGGAG 383
Query 518 CTCTGCACAGATTGATACTGAGGTCACTGCGTCTGAGAATTCAAGTACTCCTGCACGGAA 577
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 384 CTCTGCACAGATTGATACTGAGGTCACTGCGTCTGAGAATTCAAGCACTCCTGCAAGAAA 443
Query 578 GTGTATTATGTTGAATTCGAATGATGAAGATCCTTATGGTGTTCAGAGACAAGTCATTTC 637
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GTGTATTATGTTGAATTCTAATGATGAAGATCCTTATGGTGTTCAGAGACAAGTCATTTC 503
Query 638 CTTGTATAACATGTCACAATCTGAGAGGAAGGATTTGATTTATCGGCTTAAGCTGGAGTT 697
||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 504 CTTGTATAATATGTCACAATTTGAGAGGAAGGATTTGATTTATCGGCTTAAGTTGGAGCT 563
Query 698 GGAGCAGACAAAGATAGTTCTTAAAAATGCTGAGTTGCAGAGAATGAACCCTGCTGCTGT 757
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 564 GGAGCAGACAAAGATAGTTCTTAGAAATGCTGAGTTGCAGAGGATGAACCCTGCTGCTGT 623
Query 758 GTCGTCTACTAGTGATAGGGTGGGTTTTAGCACTGGTCAAAAGATATCATCTCGAGTCAG 817
||||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||
Sbjct 624 GTCGTCTACTAGTGATAGGGTGGGTTTTAGCACTGCTCAAAAGCTGTCTTCTCGAGTCAG 683
Query 818 CAATTCGAAGAAACCATCTGATTTTGCTGTGGGTTCGGGGAAGAAAGTTCGGCATCAGAA 877
|||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 684 CAATTCGAAGAAGCCATCTGATTTTGCAATGGGATCAGGGAAGAAAGTTCGGCATCAGAC 743
Query 878 TGGGACTTCTCGTGGATGGAATCGTGGTACCTCAGGGAAGTTTGAGTCTTCGAAAGAGAC 937
||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 744 TGGGAGTTCCCGTGGATGGAATCGTGGTACCTCGGGGAAGTTTGAGTCTTCGAAAGAGTC 803
Query 938 TATGACTAGCACTCCTAACATTACACTGATGAAGCAATGTGACACGCTACTGAGAAAACT 997
||||||||||||| |||| ||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 804 TATGACTAGCACTACTAATATTACACTGATGAAGCAATGTGATACGCTATTGAAAAAACT 863
Query 998 GTGGTCTCATCCGCATTCTTGGGTGTTTCAGGCGCCAGTTGATGTAGTGAAACTGAACAT 1057
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 GTGGTCTCATCCGCATTCTTGGGTTTTTCAGGCGCCAGTTGATGTAGTGAAACTGAACAT 923
Query 1058 ACCTGACTATCTCACTACTATCAAGCATCCCATGGACTTAGGGACAGTAAAGAAGAACTT 1117
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 924 ACCTGACTATCTCACTATTATCAAACATCCCATGGACTTGGGGACAGTAAAGAAGAACTT 983
Query 1118 AGCGTCTGGTGTATACTCAAGCCCACATGAGTTTGCTGCTGATGTGAGGCTTACATTTAC 1177
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 984 AGCATCTGGTGTATACTCAAGCCCACATGAGTTTGCTGCAGATGTGAGGCTTACATTTAC 1043
Query 1178 CAATGCGATGACATATAACCCTCCAGGACATGATGTTCACATTATGGGGGATATCCTTAG 1237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CAATGCAATGACATATAACCCTCCAGGACATGATGTTCACATTATGGGGGATATCCTTAG 1103
Query 1238 TAAATTATTTGAAGCGCGGTGGAAAACTATCAAAAAGAAATTACCACCTTGTAGCATGCA 1297
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 1104 TAAATTATTTGAAGCGCGGTGGAAAACTATCGAAAAGAAATTACCAGCTTGTAACATGCA 1163
Query 1298 AACGTTGCCTGCAGTAACATTGGAGCCCAATGATGAAAGGAAAGCTGCTATATCTGTACC 1357
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1164 AACGTTGCCTGCAATATCATTGGAGCCCAATGATGAAACGAAAGCTGCTATATCTGTCCC 1223
Query 1358 TCCGGCGAAGAAGAGAAAGATGGCTTCACCCGTTAGAGAGAGTGTTCCAGAACCGGTGAA 1417
||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1224 TCCAGCGAAGAAGAGAAAGATGGCTTCACCCATTAGAGAGAGTGTTCCAGAACCCGTGAA 1283
Query 1418 GCCACTTATGACAGAAGTGGAGAGGCATAGATTGGGCAGACAACTCGAATCACTACTCGA 1477
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1284 GCCACTTATGACTGCAGAGGAGAGGCATAGATTGGGCAGACAACTCGAATCACTACTAGA 1343
Query 1478 CGAACTTCCTGCACATATCATTGACTTCTTGAAGAAACACAATTCAAATGGCGGAGAAAT 1537
||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||
Sbjct 1344 CGAACTTCCTGCACATATCATTGACTTTTTGAGGAAACACAGTTCAAATGGAGGAGAAAT 1403
Query 1538 TGCAGAAGACGAAATTGAGATAGACATTGATGTTCTCAGTGATGAAGTACTGGTCACTCT 1597
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TGCGGAAGACGAAATTGAGATAGACATTGATGTTCTCAGTGATGAAGTACTGGTCACTCT 1463
Query 1598 TCGAAACCTTCTAGATGAATATATACAAAACAAAGAAGCAAAGCAGACGAATGTTGAACC 1657
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1464 TCGAAACCTTCTAGATGAATATATACAAAATAAAGAAGCAAAGCAGTCGAATGTTGAACC 1523
Query 1658 ATGTGAAATAGAGCTTATTAATGGATCACGACCGAGCAATTCGTCGCTGCAAAGAGGAAA 1717
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1524 ATGTGAAATAGAGCTTATTAATGGATCAGGACCGAGCAATTCGTCGCTGCAACGAGGAAA 1583
Query 1718 TGAAATGGCTGATGAGTATGTCGATGGGAATGAACCGCCTATCTCAAGGAGCTCCAGTGA 1777
|||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1584 TGAATTAGCTGATGAGTATGTCGGTGGGAATGAACCTCCTATCTCAAGGAGCTCCAGTGA 1643
Query 1778 TTCGGATTCTGGTAGCTCGGAAGATCAATCTGATGACGCTAAACCCATGGTTCAAGGGGA 1837
|||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1644 TTCGGACACTGGTGGCTCAGAAGATCAATCTGATGATGCTAAACCCATGGTTCAAGAGGA 1703
Query 1838 TTCTTCCAAGATGCCTGAAACTGCAAACTCTGAGGCGCAAAGAGATGAAAATACAAGAAT 1897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1704 TTCTTCCAAGATGCCTGAAACTGCAAATTCTGAGGCGCAAAGAGATGAAAATACAAGAAT 1763
Query 1898 TGATGATCTTTTTGTTGGGAGTCAATCTACTGGTGCGCTTG-AGCAGATGGATATTTGTT 1956
| ||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1764 TTCTGATCTTTTTGAAGGAAGTCAATCTACTGGTGCG-TTGGAGCAGATGGATATTTGTT 1822
Query 1957 CTCAGCAAAAGCTTAGTTCTGATGAATCAGATGGCCAACATGAGGGAAATATATTAGAGA 2016
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1823 CTCAGCAAAAGCCTAGTTCTGATGAATCAGATATCCAACATGAGGGAAATATATTAGAGA 1882
Query 2017 CTCCAGCTTCATCTGAGAAGCGCTATAGAGCTGCGCTGTTGAAGAACCGGTTTGCAGATA 2076
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1883 CTCCAGTTTCATCTGAGAAGCGCTATAGAGCTGCGTTGTTGAAGAACCGGTTTGCAGATA 1942
Query 2077 TCATTCTAAAAGCACGAGAGAAACCACTTCCACAGAATGGTATTAAGGGCGATCCagaaa 2136
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1943 TCATTCTAAAAGCACGCGAGAAACCTCTTCCACAGAATGGTATTAAGGGCGATCCAGAAA 2002
Query 2137 ggctgcgtaaagaaagagaagaactcgtactgcagaagaagaaagagaaagCGCGTCTAC 2196
||||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 2003 GGCTGCGTAAAGAAAGAGAAGAACTCGAATTGCAGAAGAAGAAAGAAAAAGCGCGACTAC 2062
Query 2197 AAGCTGAAGCAGAGGCTGCTGAAGATGCTCGTCGCCAAGCTGAAGCAGAAGCCGCTGCAG 2256
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2063 AAGCTGAAGCAAAGGCTGCTGAAGATGCTCGTCGCCAAGCTGAAGCAGAGGCCGCTGCAG 2122
Query 2257 AAGCTGCTGCTGAGGCTAAGCGGAAGAGAGAACTCGAAAGAGAAGCCGCTCGCCAAGCTT 2316
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2123 AAGCTGCTGCTGAGGCTAAGCGGAAGAGAGAACTCGAAAGAGAAGCCGCTCGTCAAGCTT 2182
Query 2317 TATTGAAGATGGAGAAAACTGTAGAGATTAATGAGAACTCACGGTTTCTCGAGGACCTAG 2376
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2183 TATTGAAGATGGAGAAAACTGTAGAGATCAATGAGAACTCACGGTTTCTCGAGGACCTAG 2242
Query 2377 AGATGCTGAGTTCGAGTGCACCTGAGCAATTACCAAGCTCAGCCGAAGAAACCAGCCCCG 2436
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2243 AGATGCTGAGTTCGAGTGCACCTGAGCAATTACCAAGCTCAGCAGATGAAACCAGCCCCG 2302
Query 2437 AGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGCAACCCACTTGAGCAAC 2496
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2303 AGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGTAACCCTCTTGAGCAAC 2362
Query 2497 TCGGACTGTACATGAAACAAGATGATGATGAAGAAGAGCCCGAAGCTCCTGCTGTTCCAA 2556
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 2363 TCGGACTGTACATGAAACAAGATGATGATGAAGAAGAACCCGAAGCTCATGCGGTTCCAA 2422
Query 2557 AACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAAACTCGGAG 2616
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2423 AACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCGGAG 2482
Query 2617 AATGTAATCCGCTGGAGCAACTTGGACTGTACATGAAACAAGACGACGGTGAAGAAGAAG 2676
|| |||| || ||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 2483 AAAGTAACCCTCTGGAGCAACTCGGACTGTACATGAAACAAGACGACGATGATGAAGAAG 2542
Query 2677 AACCCGAGGCTCCTGTGGTTCCAAAACCCAATGAAACCAGCCTCGAGAGACCTGTAGACG 2736
||||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 2543 AACCCGAGGCTCCTGCGTTTCCAAAACCCGATGAAACCAGCCCCGAGAGACCTTTAGACG 2602
Query 2737 CATTTGGAAGTTTCAACCTCAAAGGAAGTA--A-CCCTCTTGAGCAACTCGGACTGTACA 2793
||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 2603 CATTTGGAAGTTTCAACATCAAAGGAAGTAGTAACCCTCTTGAGCAACTCGGACTGTACA 2662
Query 2794 TGAAACAAGACGATGATGAAGAAGAACCCGAGGCTCCCGCTGTTCCAAACCTAGCCAACG 2853
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2663 TGAAACAAGACGATGATGAAGAAGAACACGAGGGTCCCGCTGTTCCAAACCTAGCCAACG 2722
Query 2854 ACGTGGAAGAAGGTGAAATCGATTGA-ACAAAAGAAGTGTATAAAATATATACATGTATT 2912
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2723 ACGTGGAAGAAGGTGAAATCGATTGATACAAAAGAAGTGTATAAAATATATACATGTATT 2782
Query 2913 ATATATAAAACAATAGCCAGGGCAGGTACAAACAGACGCAAGAAATGAAGGTCTTAGCCC 2972
|||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2783 ATATATAAAACAGTAGCCAGGGCAGGTACACACAGACGCAGGAAATGAAGGTCTTAGCCC 2842
Query 2973 TTCTTAAGAGAAGATCCAATATGTGGCTCATTGTTTAATGAGTTTTGGAATGGATCTCTC 3032
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 2843 TTCTTAAGAGAAGGTCCAATCTTTGGCTCATTGTTTAATGAGTTTTGGAATGGATCTCTC 2902
Query 3033 TTAAGCCAGTGTGGT-GTTTAATTATGTAAAACACAAAGCAAACGCTTAGAAGCTTTTTG 3091
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2903 TTAAGCCAGTGTGGTTGTTAAATTATGTAAAACACGAAGCAAACGCTTAGAAGCTTTTTG 2962
Query 3092 CCACGAGACTTCATGAAGAGTCCCTTAGTGTATGATTATT 3131
|| |||||||||||||||||||||||||||||||||||||
Sbjct 2963 CCTCGAGACTTCATGAAGAGTCCCTTAGTGTATGATTATT 3002
Score = 337 bits (182), Expect = 4e-91
Identities = 254/287 (89%), Gaps = 12/287 (4%)
Strand=Plus/Plus
Query 2562 GATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAAACTCGGAG-AATG 2620
|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 2287 GATGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAA-G 2345
Query 2621 TAATCCGCTGGAGCAACTTGGACTGTACATGAAACAAGACGACGGTGAAGAAGAAGAACC 2680
||| || || |||||||| |||||||||||||||||||| || ||| |||||||||||
Sbjct 2346 TAACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGATGA---TGATGAAGAAGAACC 2402
Query 2681 CGAGGCTCCTGTGGTTCCAAAACCCAATGAAACCAGC-CTCGAGAGACCTGTAGACGCAT 2739
||| |||| || |||||||||||| ||||||||||| | |||||||||| ||||||||
Sbjct 2403 CGAAGCTCATGCGGTTCCAAAACCTGATGAAACCAGCAC-CGAGAGACCTTTAGACGCAC 2461
Query 2740 TTGGAAGTTTCAACCTCAAAGGAAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAAC 2799
||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 2462 TTGGAAGTTTCAACCTCGGAGAAAGTAACCCTCTGGAGCAACTCGGACTGTACATGAAAC 2521
Query 2800 AAGACGA---TGATGAAGAAGAACCCGAGGCTCCCGCTGTT-CCAAA 2842
||||||| |||||||||||||||||||||||| || ||| |||||
Sbjct 2522 AAGACGACGATGATGAAGAAGAACCCGAGGCTCCTGC-GTTTCCAAA 2567
Score = 311 bits (168), Expect = 2e-83
Identities = 250/287 (87%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 2424 GAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGCAAC 2483
||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 2431 GAAACCAGCACCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCGGAGAAAGTAAC 2490
Query 2484 CCACTTGAGCAACTCGGACTGTACATGAAACAAGATGA---TGATGAAGAAGAGCCCGAA 2540
|| || ||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 2491 CCTCTGGAGCAACTCGGACTGTACATGAAACAAGACGACGATGATGAAGAAGAACCCGAG 2550
Query 2541 GCTCCTGCTGTT-CCAAAACCTGATGAAACCAGCACCGAGAGACCTTTAGACGCACTTGG 2599
|||||||| ||| |||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 2551 GCTCCTGC-GTTTCCAAAACCCGATGAAACCAGCCCCGAGAGACCTTTAGACGCATTTGG 2609
Query 2600 AAGTTTCAA-ACTCGGAG-AA-T-GTAATCCGCTGGAGCAACTTGGACTGTACATGAAAC 2655
||||||||| | || || || | |||| || || |||||||| ||||||||||||||||
Sbjct 2610 AAGTTTCAACA-TCAAAGGAAGTAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAAC 2668
Query 2656 AAGACGACGGTGAAGAAGAAGAACCCGAGGCTCCTG-TGGTTCCAAA 2701
||||||| ||| |||||||||| ||||| ||| | || |||||||
Sbjct 2669 AAGACGA---TGATGAAGAAGAACACGAGGGTCCCGCTG-TTCCAAA 2711
Score = 202 bits (109), Expect = 1e-50
Identities = 130/140 (93%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 2707 ATGAAACCAGCCTCGAGAGACCTGTAGACGCATTTGGAAGTTTCAACCTCAAAGGAAGTA 2766
|||||||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 2288 ATGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGGAAGTA 2347
Query 2767 ACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGACGATGATGAAGAAGAACCCGAGG 2826
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2348 ACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGATGATGATGAAGAAGAACCCGAAG 2407
Query 2827 CTCCCGCTGTTCCAAA-CCT 2845
||| || |||||||| |||
Sbjct 2408 CTCATGCGGTTCCAAAACCT 2427
Score = 178 bits (96), Expect = 2e-43
Identities = 130/146 (89%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 2419 CCGAAGAAACCAGCCCCGAGAGACCTTTAGACGCACTTGGAAGTTTCAACCTCAGAGG-A 2477
|||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct 2570 CCGATGAAACCAGCCCCGAGAGACCTTTAGACGCATTTGGAAGTTTCAACATCAAAGGAA 2629
Query 2478 --AGCAACCCACTTGAGCAACTCGGACTGTACATGAAACAAGATGATGATGAAGAAGAGC 2535
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2630 GTAGTAACCCTCTTGAGCAACTCGGACTGTACATGAAACAAGACGATGATGAAGAAGAAC 2689
Query 2536 CCGAAGCTCCTGCTGTTCCAAAACCT 2561
||| | ||| ||||||||||| |||
Sbjct 2690 ACGAGGGTCCCGCTGTTCCAAA-CCT 2714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118498752195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5