BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27270.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936462 jgi|Araly1|936462|scaffold_500653.1 1210 0.0
> Ahg936462 jgi|Araly1|936462|scaffold_500653.1
Length=790
Score = 1210 bits (655), Expect = 0.0
Identities = 749/794 (94%), Gaps = 8/794 (1%)
Strand=Plus/Plus
Query 16 CAAGTTATTCTTTATCAGTAATGGAACCAATTACTTATTCCAAAGATCTTCCATTATTCT 75
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAGTTATTATTTATCAGTAATGGAACCAATTACTTATTCCAAAGATCTTCCATTATTCT 60
Query 76 TCTCAATCTTCATCTTCGTTTATCTTCTCGGTTACTTATTCATTTTCAAAAAATGGACTC 135
|||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TCTCTATCTTCATCTTCGCTTATCTTCTCGGTTACTTATTCATTTTCAATAAATGGACTC 120
Query 136 C-GGAGACTCGTCCTTTAGCTTCCAGCTGTTTAATCTCCCTCCTCCACGGCGTCTCCGCC 194
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CAGG-GACTCGTCCTTTAGCTTCCAGCTGTTTAATATCCCTCCTCCACGGCGTCTCCGCC 179
Query 195 GTCGTCCTCGCCACGAACGCCTTACTCTCCGATCCTAACCGTGGATTCTCCTCCGTCAAC 254
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GTCGTACTCGCCACCAACGCCTTACTCTCCGACCCTAACCGTGGATTCTCCTCCGTCAAC 239
Query 255 ACCCAATCTCAAAACTCAATTCTCGATTTCAGCTCCGCTTATTTCCTCGCTGATCTCGTC 314
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCCAATCTCAAAACTCTGTTCTCGATTTCAGCTCCGCTTATTTCCTCGCTGATCTCGTC 299
Query 315 CACCTTGCCGTGTTTCCTTCTCCCGCCGGCGGAGACTCGCTTTTCGCCGCTCATCAC-CT 373
||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 300 CACCTCGCCGTGTTTCCTTCTCCCGCCGGCGGAGACTCACTTTTCGCAGCTCATCACGC- 358
Query 374 CGCCGTGCTTTTCGTTTTCCTCACCTGCCGTTACATGGTTGCTCACGGCGCCTGCGCTCT 433
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 359 CGCCGTGCTCTTCGTTTTCCTCACGTGCCGTTACATGGTTGCTCACGGCGCTTGCGCTCT 418
Query 434 GCTCGCGCTGCTAGTCGTCGCGGAGGCCACGAGCGCGTGTCAGAACACGTGGACGCTCGC 493
||| |||||||| |||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 419 GCTGGCGCTGCTCGTCGTCGCCGAAGCGACCAGCGCGTGTCAGAACACGTGGACGCTAGC 478
Query 494 GGATGCGCGTGGGAAAGACGCGCCTCTAGCGGTGAGTTTGCACCGGTTCGTTACGGTGCC 553
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 GGATGCGCGTGGTAAAGACGCGCCTCTCGCGGTGAGTTTGCACCGGTTCGTTACGGTGCC 538
Query 554 GTTTTACGCGTCCTATAGCGTCTGCAGGTGCGTTCTAGCGCCGTTGCTTATCGTTAAGAT 613
|||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 539 GTTTTACGCGTCGTATAGCGTTTGCAGGTGCGTTATAGCGCCGTTGCTTATCGTTAAGAT 598
Query 614 GACGTGGTTTTACGTCAGCGGAGGCGCTGATGACGTCATACCCAGATGGGTTTGGGTTTC 673
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACGTGGTTTTACGTCAGTGGAGGCGCTGATGACGTCATACCCAGATGGGTTTGGGTTTC 658
Query 674 GTGGACCGTTGTTATTGTTACTGCCGTTACCGTTAGTATCCTTTGGATTTGGAATTTGTG 733
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 GTGGACCGTTGTTATTGTTGCTGCCGTTACCGTTAGTATCCTTTGGATTTGGAATTTATG 718
Query 734 GGTACTGTTTTTTCAGGAAAGATATTCCAAATTTACCAAAAAGGTTAGGTA-AAAATATA 792
||| ||||||||||||||||| |||||||||||||||||||| |||| || |||| |||
Sbjct 719 GGTTCTGTTTTTTCAGGAAAGGTATTCCAAATTTACCAAAAAAGTTAAATAGAAAA-ATA 777
Query 793 TTT-ACAGTTTCCA 805
||| | | ||||||
Sbjct 778 TTTGA-ATTTTCCA 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5