BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27280.2
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484510 jgi|Araly1|484510|fgenesh2_kg.5__502__AT3G27280.1 1399 0.0
Ahg493903 jgi|Araly1|493903|fgenesh2_kg.7__3336__AT5G40770.1 784 0.0
> Ahg484510 jgi|Araly1|484510|fgenesh2_kg.5__502__AT3G27280.1
Length=934
Score = 1399 bits (757), Expect = 0.0
Identities = 827/862 (96%), Gaps = 0/862 (0%)
Strand=Plus/Plus
Query 78 AAAAGAAAATGGGAAGTCAACAAGTAGCGATTTCGTTTCTGACGAACTTGGCGAAGGCGG 137
|||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 35 AAAAAAAAATGGGAATTCAACAAGCAGCGATTTCGCTCCTGACGAACTTGGCGAAGGCGG 94
Query 138 CGTTTGGGTTAGGTGTGGCGGCGACGGCACTAAACTCGTCGCTCTACACTGTTGATGGTG 197
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 95 CGTTTGGTTTAGGTGTGGCGGCGACGGCACTGAACTCGTCACTCTACACTGTTGATGGTG 154
Query 198 GCGAGAGAGCTGTTTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACCGTCGGCGAAG 257
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 155 GCGAGAGAGCTGTGTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACTGTCGGCGAAG 214
Query 258 GGACTCATTTCTTGATCCCGTATCTCCAGACGCCGCACATATACGATATTCGTACGAAAC 317
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 215 GGACTCATTTCTTGATCCCGTATCTCCAGACACCTCACATCTACGATATTCGTACGAAAC 274
Query 318 CTCACACTTTCTCCTCCAAATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CTCACACTTTCTCCTCCAAATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 334
Query 378 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGTACATTTTCCAAACATTGGGTCTTG 437
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
Sbjct 335 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGAAGATTTACCAAACATTGGGTCTAG 394
Query 438 AATACGATGAGAAGGTTCTTCCATCGATTGGAAATGAGGTCTTGAAAGCTGTGGTTGCTA 497
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 395 AATACGATGAGAAAGTTCTTCCCTCAATTGGAAATGAGGTATTGAAAGCTGTGGTTGCTA 454
Query 498 ATTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGATG 557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 CTTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGATG 514
Query 558 CTCTTATCAAGCGTGCCAGGGAATTTAACATTGAGCTCGACGACATAGCCATTACTCACT 617
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 515 CTCTTATCAAGCGTGCCAGGGAATTCGGCATTGAGCTCGACGACATAGCTATTACTCACT 574
Query 618 TATCGTACGGTGCTGAGTTCTCGAGGGCAGTGGAGGCGAAGCAAGTGGCTCAGCAGGAAG 677
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 575 TATCATACGGTGCTGAGTTCTCGAGGGCAGTTGAGGCGAAGCAAGTGGCTCAGCAGGAAG 634
Query 678 CTGAAAGGTCAAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTTATAA 737
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 635 CTGAAAGGTCAAAGTTTGTGGTGATGAAAGCTGATCAAGAGAGGAGAGCTGCGGTTATAA 694
Query 738 GAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATATCAGATGCAACAGCTAAAGCAGGAA 797
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 695 GAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCAGATGCAACAGCTAAAGCAGGAA 754
Query 798 TGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCGGCTACTCTGGCTA 857
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 755 TGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCAGCTACTCTGGCTA 814
Query 858 GGTCTCCGAACGTGGCTTACTTACCTGGTGGACAAAGCATGCTCTTTAATCTGAACCCTG 917
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 815 GGTCTCCGAACGTGGCTTATTTACCTGGTGGACAAAGCATGCTCTTTTCTCTGAACCCTG 874
Query 918 GTCGTTGAGCTATAACATTGGT 939
|||||||||| |||||||||||
Sbjct 875 GTCGTTGAGCCATAACATTGGT 896
> Ahg493903 jgi|Araly1|493903|fgenesh2_kg.7__3336__AT5G40770.1
Length=1414
Score = 784 bits (424), Expect = 0.0
Identities = 705/841 (84%), Gaps = 18/841 (2%)
Strand=Plus/Plus
Query 83 AAAATGGGAAGTCAACAAGTAGCGATTTCGTTTCTGACGAACTTGGCGAAGGCGGCGTTT 142
||||||||||| ||||||| ||| ||||||| || | || ||||| ||||| || |||
Sbjct 98 AAAATGGGAAGCCAACAAGCGGCGGTTTCGTTCCTTTCCAATTTGGCAAAGGCAGC-TTT 156
Query 143 GGGT-TAGGTGTGGCGGCGACGGCACTAAACT-CGTCGCTCTACACTGTTGATGGTGGCG 200
||| | || ||||||||||| | || | | ||||| | ||| ||||| || || |
Sbjct 157 CGGTCTCGGAACGGCGGCGACGGTGTTGAA-TACATCGCTTTTCACCGTTGACGGCGGAG 215
Query 201 AGAGAGCTGTTTTGTTCGATCGATTCAGGGGAGTGTTGGATCAGACCGTCGGCGAAGGGA 260
| ||||||||| | |||||||||||||| |||||| |||||||||| || || ||||| |
Sbjct 216 AAAGAGCTGTTATCTTCGATCGATTCAGAGGAGTGATGGATCAGACTGTTGGTGAAGGAA 275
Query 261 CTCATTTCTTGATCCCGTA-TCTCCAGACG-CCGCACATATACGATATTCGTACGAAACC 318
||||||||||||||||| | ||| |||| | || ||||| | |||||| || ||||| ||
Sbjct 276 CTCATTTCTTGATCCCG-ATTCTTCAGA-GACCTCACATCTTCGATATCCGCACGAAGCC 333
Query 319 TCACACTTTCTCCTCCAA-ATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCCTTC 377
|||||| |||| || ||| ||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 334 TCACACGTTCT-CTTCAATCTCTGGAACTAAGGATCTCCAGATGGTTAATCTCACTCTTC 392
Query 378 GTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGTACATTTTCCAAACATTGGGTCTTG 437
||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||||| |
Sbjct 393 GTGTTCTCTCTCGCCCTGAGGTGTCGCGTCTCCCGTATATTTTCCAAACCTTGGGTCTAG 452
Query 438 AATACGATGAGAAGGTTCTTCCATCGATTGGAAATGAGGTCTTGAAAGCTGTGGTTGCTA 497
| || || ||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 453 AGTATGACGAGAAGGTTCTGCCTTCGATTGGAAATGAGGTTTTGAAAGCTGTGGTTGC-A 511
Query 498 -ATTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCGTGAT 556
| ||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| ||
Sbjct 512 CAGTTCAACGCTGACCAGCTTCTCACAGAGCGTCCTCACGTCTCAGCACTTGTTCGAGA- 570
Query 557 G-CTCTTATCAAGCGTGCCAGGGAATTTAACATTGAGCTCGACGACATAGCCATTACTCA 615
| | || ||||| ||||||| ||| || ||||||| ||| ||||| |||| || || ||
Sbjct 571 GTCGCTAATCAACCGTGCCAAGGACTTCAACATTGTGCTTGACGATGTAGCTATCACGCA 630
Query 616 CTTATCGTACGGTGCT-GAGTTCTCGAGGGCAGTGGAGGC-GAAGCAAGTGGCTCAGCAG 673
|| || || |||| | ||||| || ||||| || || || ||| ||||||||||| |||
Sbjct 631 TTTGTCCTATGGTG-TGGAGTTTTCAAGGGCTGTTGA-GCAGAAACAAGTGGCTCAACAG 688
Query 674 GAAGCTGAAAGGTCAAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTT 733
|| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GAGGCAGAGAGGTCTAAGTTTGTGGTGATGAAGGCTGATCAAGAGAGGAGAGCTGCGGTT 748
Query 734 ATAAGAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATATCAGATGCAACAGCTAAAGCA 793
|||||||| ||||||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 749 ATAAGAGCTGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCTGATGCTACGGCTAAAGCT 808
Query 794 GGAATGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCGGCTACTCTG 853
||||||||||| || ||||| |||||||| || |||||||||||| ||||| |||| ||
Sbjct 809 GGAATGGGACTTATCGAGCTCAGGAGGATCGAGGCTTCAAGGGAGATTGCGTCTACACTT 868
Query 854 GCTAGGTCTCCGAACGTGGCTTACTTACCTGGTGGACAAAGCATGCTCTTTAATCTGAAC 913
||||||||||| || ||||| |||||||| ||||| || |||||||||||| |||||||
Sbjct 869 GCTAGGTCTCCTAATGTGGCGTACTTACCCGGTGGCCAGAGCATGCTCTTTGCTCTGAAC 928
Query 914 C 914
|
Sbjct 929 C 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5