BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27290.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484511 jgi|Araly1|484511|fgenesh2_kg.5__503__AT3G27290.1 1879 0.0
> Ahg484511 jgi|Araly1|484511|fgenesh2_kg.5__503__AT3G27290.1
Length=1776
Score = 1879 bits (1017), Expect = 0.0
Identities = 1562/1802 (87%), Gaps = 129/1802 (7%)
Strand=Plus/Plus
Query 98 tcttcctcttcctctcgaatcctttctctttcc-------t-ttttccCGCTGATTACGC 149
||||| ||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 64 TCTTCTTCTTCCTCTCGAATCCTTTCTCTTTCCTATTTTTTATTTTCCCGCTGATTTCGC 123
Query 150 GATCCCGTTCCTTCtcattcattcattcattcattcattcTCTCGCCG-tttttttATAT 208
||| | || | || ||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 124 GAT--C---CCAT-TCGTTC--TCATTCATTCATTCATTCTCTCGCCGTTTTTTTTTTA- 174
Query 209 ATTTATTTCATTGGATCTGTTTCAGATTTCGATTTCCTTAATTCATTGAG---AGATTCG 265
|| ||||||| || |||||| |||| ||| || ||| | || | |||||
Sbjct 175 ATCTATTTCA---GA----TTTCAG-TTTC--TTT--TT--TTC--TCAGCTTA-ATTCG 217
Query 266 TTAATGGAGGTTAATTACGAAAG-GCTTCGAGGTTCTTA------------TAACGATTA 312
|||||||||||||||| || | | ||||||||||||||| || ||||||
Sbjct 218 TTAATGGAGGTTAATTCCG-ACGAGCTTCGAGGTTCTTATGCTTCTTGTGGTATCGATTA 276
Query 313 CAGAAAATTAGAATTGGGTTTAGGCGAATTTGGGGATGATTTTGTGGGTTTGCCTGATGA 372
| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 277 CCGAAAAGTAGAATTGGGTTTTTGTGAATTTGGGGATGATTTTGTGGGTTTGCCTGATGA 336
Query 373 TCCTTTTTGTATGAACATTAGATCGACTTTGAATTCAATCTCAGATTGGTTTCATGAGAA 432
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 337 TCCTTTTTGTATGAACATTAGATCCACTTTGAATACAATCTCTGATTGGTTTCATGAGAA 396
Query 433 TCAGATTGGTTTAGTC-TCA-GAAGATCATACTTTGCCTGAGGATCCGTTTTGTATGAGA 490
||||| | | || | | || || ||| ||||||||||||||||| |||||||||| |
Sbjct 397 TCAGA-T-G-TT-G-CAACACCAA-ATC--ACTTTGCCTGAGGATCCATTTTGTATGAAA 448
Query 491 GTTAGATCGACTTTGAACACAATCTCTGATTGGTTTCATGAGAATCAGAAAGAAATTGGT 550
|||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| |
Sbjct 449 GTTAGATCGACTTTGAACACAATCTCGGATTGGTTTCATGAGAATCACAAAG--ATT--T 504
Query 551 -GTTGTTGATCAGATGTTGTTCGAGACTCTAAGTTGGTTTTATAATAatgatg---atga 606
|| ||| || | | || || || ||||||||||| || | |||||| |||
Sbjct 505 AGTAACTGAACA-A---T-TT--AG-CT-TAAGTTGGTTTGATCTTGATGATGTTTTTGA 555
Query 607 tgatggtgatgatgatgatgatggtggtggtggtggtgaAGCTCATGACGCGTTTGAGTT 666
||||| ||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 556 TGATGATGATGATGATGATGATGATGATGATGCTGGTGAAGCTCATGACGCGTTTGAGTT 615
Query 667 GGTTCT-TCCATATCTAGAGTTGAAAGAGATTCTTGCGGTTGAAGTAGTTTGTAGGTCTT 725
||||| | ||||||||||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 616 AGTTCTGT-CATATCTAGAGGTGAAAGAGATTCTTGCGGTTGAAGGAGTTTGCAGGTCTT 674
Query 726 TGCGTGATTCGGTTGGAAAGGAACCTTTTTTCTGGACAAGTATTGATCTTAATGACTCAT 785
|||||||||||||| ||||||| ||||| ||||||| || ||||||||||||||||| |
Sbjct 675 TGCGTGATTCGGTTAGAAAGGAGCCTTTCTTCTGGAGAACCATTGATCTTAATGACTCTT 734
Query 786 TTCTTCAATATAGAGTTACTGATGAGTCTCTTTTGAAGTTAACACGCCGTGCTCTAGGCG 845
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 735 TTCTTCAATATAGAGTAACTGATGAGTCTCTTTTGAAGTTAACACGCCGCGCTCAAGGTG 794
Query 846 GTGTTCGATGTTTGAATCTTGGAGGATGTGTTGGTATCACTGATTATGGCTTGAAGCAAG 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATGTTCGATGTTTGAATCTTGGAGGATGTGTTGGTATCACTGATTATGGCTTGAAGCAAG 854
Query 906 TTCTTGCTAGCAATCCACATCTTACTAAGCTGAGTGTATCTGGTTGTCTTAGACTAAGCA 965
| ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 855 TGCTTGCAATCAATCCACATCTCACTAAGCTGAGTGTATCTGGTTGTCTTAGACTAAGCA 914
Query 966 CAGCAGGACTAGTGTCAACTTTAAGGGACTTAAAATCTTCAAACCGTCTTGGAGTCAAAA 1025
||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 915 CAGCAGGACTACTGTCAACTCTAAGGGACTTAAAATCCTCAAATCGTCTTGGAGTCAAAA 974
Query 1026 GCCTAATCACTGGTGGGGCGTTGTATTTCACAAAGGAGCAGTTTAAAGAGCTCAACTTAT 1085
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 975 GCCTAATCACTGGTGGGGCGTTATATTTCACAAAGGAGCAATTTAAAGAGCTCAACTTAT 1034
Query 1086 TGCTAGGAGGAGATGCTAAAGTGGGTTTACAAGAGAGGAAGAAGAGATTCTATACGTCTT 1145
| || |||||||||||||||| |||| | || ||||||||||||||||||||||||||
Sbjct 1035 TACTGGGAGGAGATGCTAAAGCGGGTCCAAAATCGAGGAAGAAGAGATTCTATACGTCTT 1094
Query 1146 GTAGATCAGAATTCTATTTAGAGGATGATCGAGTTACTGACCTCGAGATATGCCCCTGGT 1205
|||||||||| || | ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1095 GTAGATCAGAGTTTTCTTTAGAGGATGATCGAGTTACTGACCTAGAGATATGCCCGTGGT 1154
Query 1206 GTGAGAAACCAAGTCTGGTATTTGATTGTCCAGCAGATACATGTCCATTGAAGGGTCAAT 1265
|||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||
Sbjct 1155 GTGAGAAACCAAGTCTTGTATTTGATTGTCCAGCAGAAACCTGTCCGTTGAAGGGTCAAT 1214
Query 1266 ATCCTTATTCTAAGTCATCTTGCAGAGCTTGCGTTGTCTGCATAGAACGTTGCCATGAGT 1325
|||||||| |||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 1215 ATCCTTATCCTAAATCATCGTGCAGAGCTTGCGTAGTCTGCATAGAACGTTGCCACGAGT 1274
Query 1326 GTGGGAGTTGCTTAAATGACTGTGAAAACAAGCCGTTCTGTTTTGCATTCAGCTGTGTGG 1385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GTGGGAGTTGCTTAAACGACTGTGAAAACAAGCCGTTCTGTTTTGCATTCAGCTGTGTGG 1334
Query 1386 TATGCATTGAGAAGAGGTCTAACC-GCTTATAATAGTTTATTTGAAGTCAAAACCGAAGC 1444
| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 1335 TCTGCATTGAGAAGAGGTCTAACCAG-TTATAAGAGTTTATTTGAAGTCAAAACCGAAGC 1393
Query 1445 TTAACACATTACTTTGATCCTCAATACACTGTTTTC------TGAAGAATGAAGAGTCTT 1498
| ||||||| | |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1394 T-AACACATGAATTTGATCCTCAAAACACTGTTTTCAGAAGATGAAGAATGAAGAGTCTT 1452
Query 1499 GGTGCTTGAGGTATCAAACCTAAGTCAATAAGAAGAGCTGCAACAAAAAATGGAAACATG 1558
| ||||||||||||||| | |||||||| ||||||||||||||| |||| |||||||||
Sbjct 1453 GATGCTTGAGGTATCAATCA-AAGTCAATGAGAAGAGCTGCAACAGAAAA-GGAAACATG 1510
Query 1559 ATAAGACTCAGAAGGGTGTTTAGTCTTCATCTACAGCATCATGAAAGATCTGAGCTAAAC 1618
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 1511 ATAAGACTCAGAAGGGTGTTTAGTCTTCATCTACTGCATCATGAAAGATCTGCGCCAA-C 1569
Query 1619 TTGATTCTGCAACGGACTCGAGTCAAACTTGATCATGAGAGATGAAGAGAAGCAAAGACT 1678
| |||||||||| || | || | | || |||| | | ||||||||||||||
Sbjct 1570 TAGATTCTGCAAGGG-CGCG-G--A-----GA----GAGA-A--A-GAGAAGCAAAGACT 1612
Query 1679 AGAGCTTTACTTGAAAGTTGAAGCACCAGGATTCAAATGGGAAATAAGTAGAACTTACAA 1738
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1613 AGAGCTTTACTTGAAAGTTGAAGCAGCAGGATTCAAATGGGAAATAAGTAGAACTTACAG 1672
Query 1739 GAAAAGAGAAGAGAATAAAGAATATATCAGAGTTATTTTACATTATCATTAATTAGTCTT 1798
|||||||||||||| || | || || |||| |||| | | | ||||||||
Sbjct 1673 GAAAAGAGAAGAGA-TATT---T-TA-CA---TTAT----CATT-T-A--A-TTAGTCTT 1714
Query 1799 TTAATCTCCTCCATATGTAGCTTT-TGTTAAATGACTTGTATAATTTTCAAAATGGATCA 1857
||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1715 CTAATCTCCTCCTTATATAGCTTTATGTTAAATGACTTGTTTAATTTTCAAAATGGATCA 1774
Query 1858 AT 1859
||
Sbjct 1775 AT 1776
Score = 104 bits (56), Expect = 2e-21
Identities = 71/78 (91%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 463 TTTGCCTGAGGATCCGTTTTGTATG-AGAGTTAGATCGACTTTGAACACAATCTCTGATT 521
||||||||| ||||| ||||||||| | | ||||||| |||||||| |||||||||||||
Sbjct 325 TTTGCCTGATGATCCTTTTTGTATGAACA-TTAGATCCACTTTGAATACAATCTCTGATT 383
Query 522 GGTTTCATGAGAATCAGA 539
||||||||||||||||||
Sbjct 384 GGTTTCATGAGAATCAGA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5