BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27320.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484517 jgi|Araly1|484517|fgenesh2_kg.5__509__AT3G27320.1 2518 0.0
Ahg488268 jgi|Araly1|488268|fgenesh2_kg.6__1402__AT5G14310.1 592 4e-168
> Ahg484517 jgi|Araly1|484517|fgenesh2_kg.5__509__AT3G27320.1
Length=1671
Score = 2518 bits (1363), Expect = 0.0
Identities = 1573/1675 (94%), Gaps = 12/1675 (1%)
Strand=Plus/Plus
Query 44 CTCTTCATCTTCCTCTATCCATGGATCCATAAATCTCTGTAACCTCACAAAAGGTG-TTT 102
|||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 1 CTCTTCATGTTCTTCTATCCATGGATCCGTAAATCTCTATAACCTCACAAAAGGTGTTTT 60
Query 103 CCAATGCCAAGCGTTGGTGTGAAGCTCTACAGTGTCTTCTTCAAGTTCCTTTTGAAACAC 162
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATGCCTAGCGTTGGTGTGAAGCTCTACAGTGTCTTCTTCAAGTTCCTTTTGAAACAC 120
Query 163 CGTTTACAAAACCGGATTCAATCTTCCGGTGATGAATCTTCCTCGGATCCATTTGGTGTC 222
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CGTTTACAAAACCGAATTCAATCTTCCGGTGATGAATCTTCTTCGGATCCATTTGGTGTT 180
Query 223 ACGACCCGACCCGAAGAATCCGTCGCTGCTCCGAATCCGTTATTCACCGACGGTGTTGCA 282
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGACCCAACCCGAAGAATCCGTCGCTGCTCCGAATCCGTTATTCACCGACGGTGTTGCG 240
Query 283 ACCAAAGATATTCATATCGATCCGTTAACTTCTTTATCTGTACGAATTTTTCTTCCGGAA 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ACCAAAGATATTCATATCGATCCGTTAACTTCTTTATCTGTACGGATTTTTCTTCCGGAA 300
Query 343 TCTGCTCTTACGCCGCTTGAACCGAGTACCTCCGCCTGTGTTTATTCCGGTAAGGCTCGA 402
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TCTGCTCTTAAGCCGCTTGAACCGAGTACCTCCGCCGGTGTTTATTCCGGTAAGGCTCGA 360
Query 403 ACTCTCAACAACATCGCCGGATCGGATCTTCTTAGTAGGAGAAATAGCTTAGGTTCGTCT 462
| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 361 AATCTCAACAACCTCGCCGGATCCGATCTTCTTATTAGGAGAAATAGCTTAGGTTCGTCT 420
Query 463 AATTCGTTGTTGTCTCATAAGGTAGAATCTAGAAGGAACAGTTACGGTTACACCACTGGT 522
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 421 AATTCGTTGTTGTCTCATAAGGTAGAATCTAGAAGGAGTAGTTACGGTTTCACCACTGGT 480
Query 523 TCGTCCTCCCCTGAGGCAGGATCCTCCGACGTGTATAGAGGATACGCACCGTCGTCGTCG 582
|| || ||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 481 TCTTCTTCCCCTGAGGCAGGATCCTCCGACGTGTATAGAGGATACTCGCCGTCGTCTTCC 540
Query 583 GGTGGAAACTCTAGAAAACTTCCTGTGATGTTGCAGTTCCATGGTGGTGGATGGGTAAGT 642
|||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||
Sbjct 541 GGTGGAAACTCTAGAAAACTACCTGTGATGCTGCAGTTTCATGGTGGTGGTTGGGTAAGT 600
Query 643 GGAAGTAATGACTCAGTGGCTAATGATTTCTTT-TGTAGAAGGATGGCGAAGCACTGTGA 701
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 601 GGAAGTAATGACTCAGTGGCTAATGATTT-TTTCTGTAGAAGGATGGCGAAGCACTGTGA 659
Query 702 CATCATTGTTTTGGCAGTCGGGTACAGGCTTGCGCCTGAGAATCGGTATCCTGCTGCGTG 761
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 TATCATTGTTTTGGCAGTCGGGTACAGGCTTGCGCCTGAGAATCGGTATCCGGCTGCGTA 719
Query 762 TGAGGATGGGTTCAAGGTGTTGAAATGGCTGGGGAAGCAGGCGAATTTGGCTGAATGTAA 821
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAGGACGGTTTCAAGGTGTTGAAATGGCTGGGGAAGCAGGCGAATTTGGCTGAATGTAA 779
Query 822 TAAGTCGATGGGAAATTCTCGACGACCTGGAGGTGAGGTGAAGAAATCAGAAGTTAATAA 881
|||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 780 TAAGTCGATGGGAAATTCGCGGCGACCGGGAGGTGAAGTGAAGAAATCAGAAGTGAATAA 839
Query 882 GCATATAGTTGATGCTTTTGGTGCTTCCTTGGTGGAGCCTTGGCTGGCAAATCATGCTGA 941
|||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 840 GCATATTGTTGATGCTTTTGGTGCTTCTTTGGTGGAGCCTTGGCTCGCAACTCATGCTGA 899
Query 942 TCCCTCGAGATGTGTGCTTCTCGGTGTGAGCTGTGGTGCCAATATAGCAGACTATGTAGC 1001
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCCTTCGAGATGTGTGCTTCTTGGTGTGAGCTGTGGTGCCAATATAGCAGACTATGTAGC 959
Query 1002 CCGCAAAGCCATTGAAGTTGGTCAAAATCTAGATCCTGTCAAGGTTGTGGCTCAAGTCCT 1061
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 960 CCGTAAAGCCATTGAAGCTGGTCAAAATCTAGATCCTGTCAAGGTTGTGGCTCAAGTCTT 1019
Query 1062 AATGTACCCGTTCTTCATCGGTAGCGTACCCACACAGTCTGAGATCAAACAGGCAAATTC 1121
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1020 AATGTACCCGTTCTTCATTGGTAGTGTTCCCACACAGTCTGAGATCAAACAGGCAAATTC 1079
Query 1122 CTACTTCTACGACAAACCTATGTGCATTCTCGCATGGAAGCTTTTCTTACC-AGAAGAAG 1180
||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 1080 CTACTTCTACGACAAACCTATGTGCATTCTCGCTTGGAAGCTTTTTTTACCCA-AAGAAG 1138
Query 1181 AATTCAGCCTAGACCACCAGGCAGCGAACCCGCTCGTTCCAGGCCGAAGTCCACCGCTCA 1240
|||||||||||||||||| |||||| ||||| || |||||||||||| ||||||| ||||
Sbjct 1139 AATTCAGCCTAGACCACCCGGCAGCAAACCCCCTTGTTCCAGGCCGAGGTCCACCACTCA 1198
Query 1241 AGTTCATGCCACCTACACTAACCATTGTCGCAGAGCATGACTGGATGAGAGACCGAGCCA 1300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGTTCATGCCACCAACACTAACCATTGTCGCAGAGCATGACTGGATGAGAGACCGAGCCA 1258
Query 1301 TTGCTTACTCAGAAGAGCTAAG-AAAGGTCAACGTAGATGCTCCCGTGCTAGAGTACAAA 1359
|||| ||||||||||||||||| |||| | || ||||||||||||||||||||||| |||
Sbjct 1259 TTGCATACTCAGAAGAGCTAAGGAAAGTT-AATGTAGATGCTCCCGTGCTAGAGTATAAA 1317
Query 1360 GACGCGGTTCACGAGTTTGCAACCCTCGACATGCTTCTTAGGACTCCGCAAGCTCAGGCT 1419
|| ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1318 GATGCGGTCCACGAGTTTGCTACCCTCGATATGCTTCTTAGGACTCCACAAGCTCAGGCT 1377
Query 1420 TGTGCAGAAGATATTGCAATCTGGGCCAAGAAATACATCTCTCTTCGTGGCCACGAGTTC 1479
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 TGTGCAGAAGATATTGCAATTTGGGCCAAGAAATACATCTCTCTTCGTGGTCACGAGTTC 1437
Query 1480 TCATACTAGTGTTCACCAAAATCTCCAGGTAGCAAAAAGAGGTGAACCGAAAGTAGACCG 1539
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1438 TCATACTAGTGTTCACCAGAATCTCCAGGTAGCAAAAAGAGGTGAATCAAAAGTAGACCA 1497
Query 1540 GCTTTTTTCGGGTTTTGCTGTTCCTCCATGAAGCGGAAAGAGCTGAACCGAGAGTAAAC- 1598
| |||||||||||||||||||| ||||| ||||| ||| || |||||||| |||||||
Sbjct 1498 GATTTTTTCGGGTTTTGCTGTTTCTCCACGAAGCAAAAATAGGTGAACCGAAAGTAAACT 1557
Query 1599 ---CGGGTTTTGTTGTTTCTACCAGGAAGTaaaaaaaaaGGCAAGCAAAGCAAGAGGTTC 1655
|||||||||||||||||||||||||| |||||||| |||| || ||| ||||||||
Sbjct 1558 TTTCGGGTTTTGTTGTTTCTACCAGGAAGCAAAAAAAA-GGCAGGCGAAGGGAGAGGTTC 1616
Query 1656 TTTTTCTCTCTGCGAGTAGAGTTAGTGTAGAGTGGTGTTTACTTTGTGAGATGGG 1710
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TTTTTCTCTCTGTGAGTAGAGTTAGTGTAGAGTGGTGTTTACTTTGTGAGATGGG 1671
> Ahg488268 jgi|Araly1|488268|fgenesh2_kg.6__1402__AT5G14310.1
Length=1735
Score = 592 bits (320), Expect = 4e-168
Identities = 717/907 (79%), Gaps = 33/907 (4%)
Strand=Plus/Plus
Query 598 AAACTTCCTGTGATGTTGCAGTTCCATGGTGGTGGATGGGTAAGTGGAAGTAATGACTCA 657
||||| || |||||||||||||| || |||||||| ||||| ||||||||| ||| ||
Sbjct 647 AAACTACCAGTGATGTTGCAGTTTCACGGTGGTGGTTGGGTTAGTGGAAGTTCTGATTCG 706
Query 658 GTGGCTAATGATTTCTTTTGTAGAAGGATGGC-GAAGCACTGTGACATCATTGTTTTGGC 716
| ||||||||| |||||||| | || || || ||| | ||||| | ||||| |||||
Sbjct 707 GCGGCTAATGACTTCTTTTGCCGGAGAATTGCTAAAGTA-TGTGATGTGATTGTATTGGC 765
Query 717 AGTCGGGTACAGGCTTGCGCCTGAGAATCGGTATCCTGCTGCGTGTGAGGATGG-GTTCA 775
|| || || ||||||||||||||||||||||||||||| |||| ||||||||| | |||
Sbjct 766 CGTTGGTTATAGGCTTGCGCCTGAGAATCGGTATCCTGCGGCGTTTGAGGATGGAG-TCA 824
Query 776 AGGTGTTGAAATGGCTGGGGAAGCAGGCGAATTTGGCTGAATGTAATAAGTCGATGGGAA 835
| ||| |||| ||||| ||||| ||||| ||| | ||||||||| |||||| |||| |
Sbjct 825 AAGTGCTGAATTGGCTTGGGAAACAGGCTAATCTAGCTGAATGTTGTAAGTCTTTGGGTA 884
Query 836 ATTC-TCGACGAC-CTGGAGGTGAGGTGAAGAAATCAGAA-GTT-AATAAGCATATAGTT 891
| || || || | ||| | |||||| ||||| | ||| ||| || | || || ||
Sbjct 885 A-TCGACG-CGTCAATGGCGTTGAGGTTAAGAAGT-TGAATGTTCAAGGA-CAGATTGTG 940
Query 892 GATGCTTTTGGTGCTTCCTTGGTGGAGCCTTGGCTGGCAAATCATGCTGATCCCTCGAGA 951
||||||||||| |||||| |||| ||||||||| ||||| ||| || ||||| || |||
Sbjct 941 GATGCTTTTGGAGCTTCCATGGTTGAGCCTTGGTTGGCAGCTCACGCCGATCCTTCCAGA 1000
Query 952 TGTGTGCTTCTCGGTGTGAGCTGTGGTGCCAATATAGCAGACTATGTAGCCCGCAAAGCC 1011
||||| |||||||| ||||||||||||| || ||||||||||||||||| || |||| |
Sbjct 1001 TGTGTTCTTCTCGGGGTGAGCTGTGGTGGGAACATAGCAGACTATGTAGCTCGGAAAG-C 1059
Query 1012 A-TTGAAGTTGGTCAAA-ATCTAGATCCTGTCAAGGTTGTGGCTCAAGTCCTAATGTACC 1069
| | |||| ||| ||| |||||| || || || ||||| || || || ||||||||||
Sbjct 1060 AGTGGAAGCTGG-GAAACTTCTAGAACCGGTGAAAGTTGTTGCACAGGTTCTAATGTACC 1118
Query 1070 CGTTCTTCATCGGTAGCGTACCC-ACACAGTCTGAGATCAAA-CAGGCAAATTCCTACTT 1127
|||| ||||| || | | |||| |||||||| || || ||| | |||||| || |||||
Sbjct 1119 CGTTTTTCATTGGAAAC-AACCCAACACAGTCCGAAAT-AAAGCTGGCAAACTCTTACTT 1176
Query 1128 CTACGACAAACCTATGTGC-ATTCTCGCATGGAAGCTTTTCTTACCAGAAG-AAGAATTC 1185
||||| || ||| | | | ||||||| ||||| || |||||||||| || |||| |||
Sbjct 1177 GTACGATAAGCCTGTCT-CTGTTCTCGCCTGGAAACTCTTCTTACCAG-AGAAAGAGTTC 1234
Query 1186 AG-CCTAGACCACCAGGCAGCGAACCCGCTCGTTCCA-GGCCGAAGT---CCACCGCTCA 1240
| | | ||||||| |||||| ||||| || | ||| ||| ||| ||||| | |
Sbjct 1235 -GACTTTGACCACCCGGCAGCAAACCCACTTG-CCCATAACCGCAGTGGACCACCTTTGA 1292
Query 1241 AGTTCATGCCACCTACACTAACCA-TTGTCGCAGAGCATGACTGGATGAGAGACCGAGCC 1299
|| | ||||| || ||||| | || | || || |||||||||||||||||||||||||||
Sbjct 1293 AGCTAATGCCTCCAACACTTA-CAGTAGTAGCTGAGCATGACTGGATGAGAGACCGAGCC 1351
Query 1300 ATTGCTTACTCAGAAGAGCTAAGAAAGGTCAACGTAGATGCTCCCGTGCTAGAGTACAAA 1359
|||||||| ||||||||||| |||||||| ||||||||| |||| || |||| ||||||
Sbjct 1352 ATTGCTTATTCAGAAGAGCTTAGAAAGGTAAACGTAGATTCTCCAGTTTTAGAATACAAA 1411
Query 1360 GACGCGGTTCACGAGTTTGCAACCCTCGACATGCTTCTTAGGACTCCGCAAGCTCAGGCT 1419
||||| ||||| ||||||||||| || || |||||||| | |||||| || || |||||
Sbjct 1412 GACGCAGTTCATGAGTTTGCAACACTTGATATGCTTCTCAAGACTCCTCAGGCACAGGCC 1471
Query 1420 TGTGCAGAAGATATTGCAATCTGGGCCAAGAAATACATCTCTCTTCGTGGCCACGAGTTC 1479
|| || ||||||||||| || |||| |||||||||||| || | || ||||| || |||
Sbjct 1472 TGCGCCGAAGATATTGCCATTTGGGTCAAGAAATACATTTCAATCCGCGGCCATGAATTC 1531
Query 1480 TCATACT 1486
|| ||||
Sbjct 1532 TCTTACT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5