BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27330.1
Length=2871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484521 jgi|Araly1|484521|fgenesh2_kg.5__513__AT3G27330.1 4209 0.0
Ahg493908 jgi|Araly1|493908|fgenesh2_kg.7__3341__AT5G40720.1 965 0.0
> Ahg484521 jgi|Araly1|484521|fgenesh2_kg.5__513__AT3G27330.1
Length=2881
Score = 4209 bits (2279), Expect = 0.0
Identities = 2697/2896 (93%), Gaps = 40/2896 (1%)
Strand=Plus/Plus
Query 1 ACTCTTCTCATCATCCaaaaccagaaactttgaccggaaaagaatcagagaagtaaagaa 60
|||||| ||||||||| ||| ||||||||||||| |||||||||| |||||||| | |
Sbjct 1 ACTCTTATCATCATCC-AAA-CAGAAACTTTGACTGGAAAAGAATTAGAGAAGT--TG-A 55
Query 61 aaacagaacaaa--attaaaacAGAATTTCTT-CT-CT-AATCCATTACGCCGGCGATTT 115
||| |||| ||| ||| ||| || | || || | | |||||||||||||
Sbjct 56 AAA-AGAA-AAATCTTTACTTTTTCTTTTGTTGTTACTGAAACTAAAACGCCGGCGATTT 113
Query 116 CGGCGGCGTAGGAGATGAAAGTTCGTAGGAAACTTGGTGGTGGTTGCGGCGGAGACGTCG 175
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 114 CGGCGGCGTAGGAGATGAAGGTTCGTAGAAAACTTGGTGGTGGTTGCGGCGGAGACGTCG 173
Query 176 TTGTTTCATGGCGGACGTTCTTTTGGTTCGTGATTCTGTTTGTCTTCTCCTTCGTTCTCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTGTTTCATGGCGGACGTTCTTTTGGTTCGTGATTCTGTTTGTCTTCTCCTTCGTTCTCT 233
Query 236 TCTCCACCATGTTTATTTTTAAGGGGAAGTTTCGTCCGGTGGTTCGTTCGACGATAAGCT 295
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 TCTCCACCATGTTTATCTTTAAAGGGAAGTTTCGTCCGGTGGTTCGTTCGACGATAAGCT 293
Query 296 TCTCAACGGCTGTTACGGCAAGGGCGGTTTTCCGTGAGTCTATATCGTCTTCTCCGGCGG 355
||||||||||||||||||| ||||||||| || | ||||||||||||||||| |||||||
Sbjct 294 TCTCAACGGCTGTTACGGCGAGGGCGGTTCTCGGCGAGTCTATATCGTCTTCCCCGGCGG 353
Query 356 TTACGATTCGTGAAGCGGTGAAATTACCTGAACAAAC-TCTGGTTTTCCTAAAATACCCT 414
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 354 TTACGATTCGTGAAGCGGTGAAATTACCTGAACAAACGT-TGGTTTTCCTAAAATACCCT 412
Query 415 CAGTCTCGTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTTCTCCGGTTCGTCGAAG 474
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 413 CAGTCTCTTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTACTCCGGTTCGTCGAAG 472
Query 475 CTACGGAAAGTGTATCCGACGGCTGTGGACAGAGACAAATTTGGAGGTCAGATCGTACGG 534
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 473 CTACGGAAAGTGTATCCGACGGCTGTTAACAGAGACAAATTCGGAGGTCAGATCGTACGG 532
Query 535 TGTCCTGAGACGCCACGTGGCTACACCATTTCGCTTGCCGTTTCGAGATGGACGACCGAT 594
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 533 TGTCCTGAAACGCCACGTGGCTACACCATATCGCTTGCTGTTTCGAGATGGACGACGGAT 592
Query 595 GATCATCTCCCGGCTGGACCAACTCACCGGTATGATTGGCTGGTTTACGACGCCGTGATC 654
||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 593 GATCATCTCCCGGCTGGGCCAACTCACCGGTGGGATTGGCTTTTTTACGACGCCGTGATC 652
Query 655 GACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAATCTACGGCCAGGAAGAGTT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAATCTACGGCCAGGAAGAGTT 712
Query 715 GCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGGATTTCGCGAAACATAATCGGTTA 774
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 713 GCTGACGTGTCGAGATATGAGTGCGTGTACGGCTGGGATTTCGCGAAACATAATCGGTTA 772
Query 775 ATAAGATCAGATGTCATCACTGCGGCTCAGGAGATCGTACGGTGTAGAACACCGTTAGCT 834
|| ||||||||||| ||| | |||||||||||||| ||||||||| ||||||||||||||
Sbjct 773 ATTAGATCAGATGTTATCTCAGCGGCTCAGGAGATAGTACGGTGTCGAACACCGTTAGCT 832
Query 835 GTGTTAGACGGCCCAAAAGCGGCCCGTGGGCCTGTTAAAGTCTCGGTTAGAATCAAAGGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 GTGTTAGACGGCCCAAAAGCGGCCCGTGGGCCTGTTAAAGTCTCGGTTAGAATTAAAGGA 892
Query 895 GGAACCGGAATGCTTCCTTCTATCGCTCAGCCGGTTCGGATCATTAACCCGCCGCGAAAG 954
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 GGAACCGGTATGCTTCCTTCTATCGCTCAACCGGTTCGGATCATTAACCCGCCGCGAAAG 952
Query 955 AAACCCTTTCAAATGTGCGTTTGCACCATGACCCGAAACGCAGCCGCGGTTTTGAGAGAG 1014
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 953 AAACCGTTTCAAATGTGCGTTTGCACTATGACGCGAAACGCAGCCGCGGTTTTGAGAGAG 1012
Query 1015 TGGGTGATGTATCACGCCGGAATTGGCGTTCAACGGTGGTTCATCTATGACAACAACAGC 1074
||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||
Sbjct 1013 TGGGTGATGTATCACGCCGGAATCGGCGTTCAACGGTGGTTCATATACGATAACAACAGC 1072
Query 1075 GACGACGATATCATCGCCGAGATCGAGAATCTCGAAAGACGTGGTTACAACATCTCTAGA 1134
|| ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1073 GATGACGACATAATCGCCGAGATCGAGAATCTCGAAAGACGCGGTTACAATATCTCGAGA 1132
Query 1135 CATTTCTGGCCGTGGATTAAAACTCAGGAAGCCGGATTCTCTAATTGCGCGATCCGTGCA 1194
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 1133 CATTTCTGGCCGTGGATTAAAACTCAAGAAGCTGGATTCTCTAATTGTGCGATTCGTGCA 1192
Query 1195 AAGAGCGATTGCGATTGGATTGCGTTTATCGACGTCGACGAGTTCTTCTACATCCCATCC 1254
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1193 AAGAGCGATTGCGATTGGATCGCGTTTATTGACGTCGACGAGTTCTTCTACATCCCCTCC 1252
Query 1255 GGTGAAACTCTAACTTCCGTCATCAGAAATTACACAACCACCGACTCAATCGGTGAAATT 1314
|||||| | |||||||||||||| | ||||||||| | | |||| || || |||||||||
Sbjct 1253 GGTGAATCCCTAACTTCCGTCATAAAAAATTACACTAGCTCCGATTCGATTGGTGAAATT 1312
Query 1315 CGAACACCTTGCCACAGTTTCGGGCCATCGGGTTTGAGATCTCGGCCTCG-GAGTGGAGT 1373
||||| || ||||| ||||| || || ||||||||||||||||| || || || ||||||
Sbjct 1313 CGAACGCCGTGCCATAGTTTTGGACCGTCGGGTTTGAGATCTCGACCACGAGA-TGGAGT 1371
Query 1374 CAC-GTCGGGATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGC 1432
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CACCG-CGGGATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGC 1430
Query 1433 CGGAAGCGATGAACGCGACGCTGATAAACGTTGTTCACCATTTTCACCTCAGAGATGGAT 1492
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1431 CGGAAGCGATGAACGCGACGCTGATTAACGTGGTTCACCATTTTCACCTCAGAGATGGAT 1490
Query 1493 TCACGTTTGCTGACATGGATAAGGATATAATGGTAATCAACCACTACAAGTATCAGGTGT 1552
||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || |
Sbjct 1491 TCACGTTTGCTGACATGGACAAGGATATAATGGTAATTAACCATTACAAATATCAAGTTT 1550
Query 1553 GGGAGGTTTTCAAAGAGAAGTTTTATCGGCGAGTCGCGACGTACGTAGCGGATTGGCAAA 1612
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1551 GGGAGGTTTTCAAAGAGAAGTTTTATCGGAGAGTCGCGACTTATGTAGCGGATTGGCAAA 1610
Query 1613 ACGAAGAGAATGTCGGGTCAAGAGATCGAGCACCCGGTTTAGGAACCCGACCCGTTGAAC 1672
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1611 ACGAAGAGAATGTCGGGTCGAGAGATCGGGCACCCGGTTTAGGAACCCGACCCGTTGAAC 1670
Query 1673 CATCTGATTGGGCTGAGAGATTCTGTGAGGTTAATGATACGGGGCTTAGAGATCAAGTGT 1732
||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct 1671 CATCTGATTGGGCTGAGAGATTCTGTGAGGTGAATGATACGGGGCTTAAAGATCAGGTGT 1730
Query 1733 TTGAGAAGTTCAAAGACaaaaaaaCGCAGCGTTTAGTTTGGGAAAAAGCGGAAGAAGACG 1792
|||||||||| |||||||| ||||||||||||||| | ||||||||||||||||| ||
Sbjct 1731 TTGAGAAGTTTAAAGACAATAAAACGCAGCGTTTAATGTGGGAAAAAGCGGAAGA---CG 1787
Query 1793 ACAATATCCAGAGAATGGTGAGTGAAACACCATTGAGAGTTACTAATCGATCTGGAGATG 1852
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 1788 ACAATATCCAGAGAATGGTGAGTGAAACACCATCAAGAGTTACTAGTCGATCCAGAGATG 1847
Query 1853 GATCAAATGGATCAAAGGAAGTATCGATCGCGAGAGAGAAGAATGGTGAAAACGCAGAGA 1912
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 GATCAAATGGATCGAAGGAAGTATCGATCGCGAGAGAGAAGAATGGTGAAAACGCAGAGA 1907
Query 1913 TATTCATCAGCCCGAGATTCAAATCAGCGGCGGCTATGGCGGGTTGGGACGAAGAAGATC 1972
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1908 TTTTCATCAGCCCGAGATTCAAATCTGCGGCGGCTCTGGCGGGTTGGGACGAAGAAGATC 1967
Query 1973 TGATAATCGCTAGCTTTGTGGTAGATGATACTCCTGAAAGAAGTTCTTCAAAGCGAAGGA 2032
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1968 TGATAATCGCTAGCTTTGTGGTTGAAGATACTCCTGAAAGAAGCTCTTCAAAGCGAAGGA 2027
Query 2033 GACGTTCCAATTTGTTGTTTAAATCAACCCCACCTTCTGGTTCTTCAAGAAGGAATCAGC 2092
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2028 GACGTTCCAATTTGTTGTTTAAATCAACCCCACCTTCAGGTTCTTCAAGAAGGAAGCAGA 2087
Query 2093 GTGTTAAGCAAAGTCTTGTTCCGTTACCTGTTATTGATCTTGATAAAGTAATCAGACATg 2152
||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2088 GTGTTAAACAAAATCTTGTTGCGTTACCTGTTATTGATCTTGATGAAGTAATCAGACATG 2147
Query 2153 aagaagaaaaatctgcagagaagaagaaaaagaagagagagatggaaacagaaacaaaag 2212
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2148 AAGAAGAGAAATCTGCAGAGAAGAAGAAAAAGAAGAGAGAGATGGAAACAGAAACACAAG 2207
Query 2213 a--aga-gaagaaaatagataaagatgagaagagTTTGTCAGATCA--------T----G 2257
| ||| |||||||||||||||||||||||||| |||||||| || | |
Sbjct 2208 ACGAGAAGAAGAAAATAGATAAAGATGAGAAGAACTTGTCAGAGCAGAACCCAATTCCTG 2267
Query 2258 TTGTGCTTCCTTGCATAGATAAGCTTCGAGATGAATTGTCTTGCGCGATTTGTCTTGAGA 2317
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2268 TTGTGCTTCCTTGCATAGATAAGCTTCGAGACGAATTGTCTTGCGCGATTTGTCTTGAGA 2327
Query 2318 TTTGCTTTGAACCTAGTACTACAACTTGTGGACACAGCTTCTGCAAAAAGTGTTTGCGAT 2377
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2328 TTTGCTTTGAACCCAGTACTACAACCTGTGGACACAGCTTCTGCAAAAAGTGTTTGCGAT 2387
Query 2378 CTGCGGCGGATAAGTGTGGAAGGAAATGCCCTAAATGCAGGCAACTAATAGGAAATGGAA 2437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 CTGCGGCGGATAAGTGTGGAAGGAAATGCCCTAAATGCAGGCAACTAATAGGAAATGGAA 2447
Query 2438 GATATTGTACTGTCAATACGGTTCTTTGGAACACAATCCAGCTTTTGTTCCCTAAAGAAG 2497
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 GATATTGTACGGTTAATACGGTTCTTTGGAACACAATCCAGCTTTTGTTCCCTAAAGAAG 2507
Query 2498 TCGAAGCACAGAGAGCTGCTTCTGCTAACTTGAAAGGCAAGGAGACACCGAGTCCTAGAA 2557
|||||||||| ||||||||| |||||| ||||||||||||||| || |||||||||||||
Sbjct 2508 TCGAAGCACATAGAGCTGCTGCTGCTATCTTGAAAGGCAAGGAAACGCCGAGTCCTAGAA 2567
Query 2558 ATCCGAATCAAAGGCTAAGAAGCAGAAACAGGGAAACTGCATTGTTTCAAGAGAGGTTAC 2617
|||| |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 2568 ATCCTAATCAAAGGCTAAGAAGCAGAAACAGAGACACTGCCTTGTTTCAAGAAAGGTTAC 2627
Query 2618 AAAGAGAGGATATTTCGAGATTGCTTGTATCTGAAGAGAGAAGTGAGAGGAGCGAAAGAA 2677
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 2628 AAAGAGAGGATATTTCGAGATTGCTTGTATCCGAAGAGAGAAGCGAGAGGAGCGAGAGAA 2687
Query 2678 GGAGGAGAAGTACAAGTATGAGGTTGGATCAAAATAGGGATGCAGCATTAGCGAT-GCGG 2736
|||||||||| |||||||||||||||||||| |||||||||| |||||||| || ||||
Sbjct 2688 GGAGGAGAAGCGCAAGTATGAGGTTGGATCAAGATAGGGATGCTGCATTAGC-ATTGCGG 2746
Query 2737 TTACAGCGACAGGAGTTCGCATCAGCTTTTGGCGCAACGACGGCTGAAACTTCTTCTTCA 2796
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 TTACAGCGGCAAGAGTTCGCATCAGCTTTTGGCGCAACGACGGCTGAAACTTCTTCTTCA 2806
Query 2797 TCGGTTTCTACTCTGTCGCGAGCAAGAGCTAACCTGCA-AGCTATGGCGTCAAGAGCTGT 2855
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 2807 TCGGTTTCTACTCTGTCGCTAGCAAGAGCTAACCTG-AGAGCTATGGCGTCAAGAGCTGT 2865
Query 2856 TCGCAGGCAAGGATGA 2871
||||||||||||||||
Sbjct 2866 TCGCAGGCAAGGATGA 2881
> Ahg493908 jgi|Araly1|493908|fgenesh2_kg.7__3341__AT5G40720.1
Length=1976
Score = 965 bits (522), Expect = 0.0
Identities = 1164/1467 (79%), Gaps = 72/1467 (5%)
Strand=Plus/Plus
Query 354 GGTTACGATTCGTGAAGC-GGTGAAATTACCTGAACAAACTCTGGTTTTCCTAAAATACC 412
||| ||||| | |||||| | || | || || || ||||| || |||||||||||||||
Sbjct 358 GGTGACGATCCATGAAGCAGTTG-AGTTTCCCGACCAAACAATGATTTTCCTAAAATACC 416
Query 413 CT-CAGT-CTCGTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTTCT-C--CG---- 463
|| || | || |||||||||||||||||| || ||| |||||||||||| | ||
Sbjct 417 CTCCA-TATTC-TCGGTTATTTACAAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAA 474
Query 464 -G-TTCGTCGAAGCTACGGAAAGTGTA-TCCG-ACGGCTGTGGACAGAGACAAATTTGGA 519
| |||||| || ||| |||| | | |||| | || ||||| | ||| | | |||
Sbjct 475 CGATTCGTCTAAACTATTTAAAGAG-ATTCCGTTC-GCGGTGGAAACCGACGACTATGGC 532
Query 520 GGTCAGATCGTACGGTGTCCTGAGACG--CCACGTGGCTACACCATTTCGCTTGCCGTTT 577
||||||||||||||||| | || || ||||||||| | || | || || |||||||
Sbjct 533 CGTCAGATCGTACGGTGT--TCAGCCGTTCCACGTGGCAATACTGTATCCCTCGCCGTTT 590
Query 578 CGAGATGGACGACCG---ATGATCATCTCCCGGCT-GGAC-CAACTCACCGGTATGATTG 632
||||||||||| | || || |||||| | | || | | || ||||| | |||||
Sbjct 591 CGAGATGGACGGTTGATAATAATAATCTCCAAG-TAGGGCTC-ACACACCGATGGGATTG 648
Query 633 GCTGGTTTACGACGCCGTGATCGACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCT 692
|||||| |||||||||||||||||| |||| || || |||||||||||||||||||||||
Sbjct 649 GCTGGTGTACGACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCT 708
Query 693 TAATCTACGGCCAGG-AAGAGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGG 751
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TAATCTACGGCCAGGAAAG-GTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGG 767
Query 752 ATTTCGCGAAA-CATAATCGGTTAATAAGATCAGATGTCATCACTGCGGCTCAGGAGATC 810
|||| | ||| | || | || | ||| || | || ||| ||||||| || ||||||
Sbjct 768 ATTTTAC-AAAGCCCAAACTTTTGCTTAGAGCACAAGTTATCTCTGCGGCCCAAGAGATC 826
Query 811 GTACGGTGTAGAACACCGTTAGCTGTGTTAGACGGCCCAA-AAGCGGCCC---GTGGGCC 866
||||| || | ||| || || | || ||||||||||||| || ||||| | ||
Sbjct 827 GTACGATGCAAAACGCCACTAACAGTATTAGACGGCCCAAGAA-AGGCCCAATCTCAACC 885
Query 867 TGTTAAAGTCTCGGTTAGAATCAAAGGAGGAACCGGAATGCTTCCTTCTATCGCTC-AGC 925
|| ||||| || || || || |||||| | | || |||||||||||| | || | | |
Sbjct 886 GGTGAAAGTTTCTGTGAGGATTAAAGGAAGTA--GG-ATGCTTCCTTCTGTTGC-CAACC 941
Query 926 CGGTTCGGA--TCATTAACCCG-CCGCGA-AAGAAACCCTTTCAAATGTGCGTTTGCACC 981
| || | || | | | || | |||| | ||| | | ||| ||||| |||
Sbjct 942 CAATT-AAACGTCCGGGTCGGGTCAAAGACACGAAAACGTTTGAGACGTGTGTTTGTACC 1000
Query 982 ATGACCCGAAACGCAGC-CGCGGTTTTGAGAGAGTGGGTGATGTATCACGCCGGAATTGG 1040
||||| ||||||||||| | ||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 1001 ATGACGCGAAACGCAGCAAAC-GTTTTGAGAGAATGGGTAATGTACCACGCCGGAATCGG 1059
Query 1041 CGTTCAACGGTGGTTCATCTATGACAACAACAGCGACGACGATATCATCGCCGAGATCGA 1100
||||||||||||||||||||| |||||||||||||||||||| || | |||||||| |
Sbjct 1060 CGTTCAACGGTGGTTCATCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCAA 1119
Query 1101 GAATCTCGAAAGA-CGTGGTTACAACATCTCTAGACATTTCTGGCCGTGGATTAAAACTC 1159
|||||| |||| | || |||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1120 GAATCTAGAAA-ATCGCGGTTACAACATCTCGAGACATTTTTGGCCGTGGATAAAAACTC 1178
Query 1160 AGGAAGCCGGATTCTCTAATTGCGCGATCCGTGCAAAGAGCGATTGCGATTGGATTGCGT 1219
| ||||| |||||| | ||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 1179 AAGAAGCAGGATTCGCCAATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTTGCGT 1238
Query 1220 TTATCGACGTCGACGAGTTCTTCTACATCCCATCCGGTGAAACTCT-AACTTCCGTCATC 1278
||||||||||||||||||||||||||||| | || ||| |||| || ||| ||| |||
Sbjct 1239 TTATCGACGTCGACGAGTTCTTCTACATCTCTTCTGGTCAAAC-CTTAACCGACGTAATC 1297
Query 1279 AGAAATTACACAAC--CA-CCGACTCA-ATCGGTGAAATTCGAACACCTTGCCACAGTTT 1334
|||||| ||||||| | ||| | | || |||||||||||||| || || ||||||||
Sbjct 1298 AGAAATCACACAACATCGTCCGGCG-AGATTGGTGAAATTCGAACGCCGTGTCACAGTTT 1356
Query 1335 CGGGCCATCGGGT-TT-GAGATCTCGGCCTCGGAG-TGGAGTCACGTCGGGATACACTTG 1391
||| || ||||| || | |||| | || || | |||||||||| ||| || || ||
Sbjct 1357 CGGACCGTCGGGACTTAGCGATC-CA-CCG-GGCGGTGGAGTCACGGCGGCTTATACGTG 1413
Query 1392 CCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGCCGGAAGCGATGAACGCGAC 1451
||| ||| |||||||||||||||||||||||||||| | |||||| || | ||||||||
Sbjct 1414 TCGTATGGCGTTACCGGAGAGACACAAGAGCATAATCAGACCGGAATCGCTAAACGCGAC 1473
Query 1452 GCTGATAAACGTTGTTCACCATTTTCACCTCAGAGATGGATTCACGTTTGCTGACATGGA 1511
|||||||||||| || || ||||||||| | | ||| |||||| |||| |||||| ||||
Sbjct 1474 GCTGATAAACGTGGTGCATCATTTTCACTTAAAAGAAGGATTCGCGTTCGCTGACGTGGA 1533
Query 1512 TAAGGATATAATGGTAATCAACCACTACAAGTATCAGGTGTGGGAGGT-TTTCAAAGAGA 1570
||||| ||| |||||||| |||||||| || |||||||| |||||| | ||| |||||||
Sbjct 1534 TAAGGGTATGATGGTAATTAACCACTATAAATATCAGGTTTGGGAGATATTT-AAAGAGA 1592
Query 1571 AGTTTTATCGGCGAGTCGCGACGTACGTAGCGGATTGGCAAAACGAAGAGAATGTCGGGT 1630
||||| | || |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1593 AGTTTAAAAGGAGAGTGGCGACGTACGTGGCGGATTGGCAAAACGAAGAGAATGTCGGGT 1652
Query 1631 C-AAGAGATCGAGCACCCGGTTTAGGAACCCGACCCGTTGAACCATCTGATTGGGCTGAG 1689
| || |||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1653 CGAA-AGATCGGGCCCCCGGATTAGGGACCCGACCCGTTGAACCGTCTGATTGGGCTGAG 1711
Query 1690 AGATTCTGTGAGGTTA-ATGATACGGGGCTTAGAGATCAAGTGTTTGAGAAGTTCAAAGA 1748
|| || ||||| || | | |||| |||||||| ||| ||||| || || |||| ||
Sbjct 1712 AGGTTTTGTGAAGTGAGA-GATATTGGGCTTAGGGATTGGGTGTTGGATAATTTCAGGGA 1770
Query 1749 CaaaaaaaCGCAGCGTTTAGTTTGGGA 1775
| ||||||||||||||||| |||||
Sbjct 1771 CCGTAAAACGCAGCGTTTAGTATGGGA 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108366747025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5