BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27331.1 Length=387 Score E Sequences producing significant alignments: (Bits) Value Ahg936481 jgi|Araly1|936481|scaffold_500672.1 577 2e-164 Ahg936480 jgi|Araly1|936480|scaffold_500671.1 505 1e-142 Ahg932605 jgi|Araly1|932605|scaffold_400593.1 315 2e-85 Ahg936476 jgi|Araly1|936476|scaffold_500667.1 150 6e-36 > Ahg936481 jgi|Araly1|936481|scaffold_500672.1 Length=409 Score = 577 bits (312), Expect = 2e-164 Identities = 357/379 (94%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69 |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| Sbjct 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGCGGATTTAGGATCTCGAACGAACTCAAA 71 Query 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129 |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 72 AACAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAAACATA 131 Query 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATAAACTTTTGGCATACAACGCGT 191 Query 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTTTAGACACTATCAGAACTTTACAGCATTC 249 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 192 TTTATGTGTACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAACTTTACAGCATTC 251 Query 250 AAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGG 309 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 252 AAGCTTTTCGCTATGGCAGATCAAGGAGGCCTATGGGATTGGAGAGCAAGAGAAAATGGG 311 Query 310 ATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTT-TAAACCCAATTTGGATGCATAAAGA 368 ||||||||||||||||||||||||||| | |||| ||| | | |||||||||||||||| Sbjct 312 ATCTATTTAAAGAAAGAAGCTGGCGAGTATGTTTATAA-CGCGGTTTGGATGCATAAAGA 370 Query 369 GTATGCTTGGATTTATTAA 387 ||||| |||||| |||||| Sbjct 371 GTATGATTGGATATATTAA 389 > Ahg936480 jgi|Araly1|936480|scaffold_500671.1 Length=409 Score = 505 bits (273), Expect = 1e-142 Identities = 346/381 (91%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69 |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| Sbjct 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGTGGATTCAGGATCTCGAACGAACTCAAA 71 Query 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129 |||||||| ||| |||||| |||||||||||||||||||||||||||||||| | ||| Sbjct 72 TTCAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAGACATA 131 Query 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATTAACTTTTGGCATACAACGCGT 191 Query 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTT-TAGACACTATCAGAACTTTACAGCATT 248 ||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||| Sbjct 192 TTTATGTGTACTTTGAGACAAGGTCCTAA-TTATAAACACTATCAGAACTTTACAGTATT 250 Query 249 CAAGCTTTTC-GCTATGGCAGATGAAGGAGGTCT-ATGGGATTGGAGAGCAAGAGAAAAT 306 ||||||||| | |||||| ||| ||||||| || ||||||||||||||||||||||||| Sbjct 251 CAAGCTTTTTAG-TATGGCTGATCAAGGAGG-CTTATGGGATTGGAGAGCAAGAGAAAAT 308 Query 307 GGGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTAAACCCAATTTGGATGCATAAA 366 || |||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||| Sbjct 309 GGTATCTATTTAAAGAAAGTAGCTAGCGAGCAAGTTTTAAACCCGGTTTATATGCATAAA 368 Query 367 GAGTATGCTTGGATTTATTAA 387 | || || |||||| ||||| Sbjct 369 GTGTTTGATTGGATAAATTAA 389 > Ahg932605 jgi|Araly1|932605|scaffold_400593.1 Length=454 Score = 315 bits (170), Expect = 2e-85 Identities = 315/383 (82%), Gaps = 18/383 (5%) Strand=Plus/Plus Query 14 TTTGCATGCTAGACCATGTATCAGGCGGC-GGAATCAGGATCTCGAACGAACTCAAAAAC 72 |||||||||| | ||||||||| ||| | ||||||||||| |||||||||||||| | Sbjct 59 TTTGCATGCTTGGCCATGTATCCGGC-TCTGGAATCAGGATAGCGAACGAACTCAAATTC 117 Query 73 AAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATA 132 ||||||||||| ||||| | ||||||||||||||||| ||||| |||||||| | |||| Sbjct 118 AAGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGATGTATTCGGTCCAAAAACAATA 177 Query 133 CCAATCGGACAACAT-TATGA-AAATCTTTTTGATATTAACTTT-T-GGCATACAACGCG 188 ||||||||||||||| | ||| | |||||| | |||||| ||| | ||| ||| ||||| Sbjct 178 CCAATCGGACAACATGT-TGACATTTCTTTTCG-TATTAA-TTTATGGGC-TACGACGCG 233 Query 189 TTTTATGTGTACTTTGAGACAAG-GTCCTAACTTTAGACACTATCAGAACTTTACAGCAT 247 ||||||||||||||||||||||| | ||||||| || ||| ||||| || |||||||||| Sbjct 234 TTTTATGTGTACTTTGAGACAAGAG-CCTAACTATAAACATTATCAAAAATTTACAGCAT 292 Query 248 TCAAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATG 307 |||||||||||| | | | ||| | ||||| |||||||| ||||||||||||||| ||| Sbjct 293 TCAAGCTTTTCGGTGTTACGGATCATGGAGGCCTATGGGACTGGAGAGCAAGAGAAGATG 352 Query 308 GGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTA--AACCCAATTTGGATGCATAA 365 | || |||||||| ||||||| |||| ||| | | ||| || || || |||||||| Sbjct 353 GAATATATTTAAACAAAGAAGGTGGC-AGACA-TATTAGGAATCCGGTTAATATGCATAA 410 Query 366 AGA-GTATGCTTGGATTTATTAA 387 | | ||||| |||||| ||||| Sbjct 411 A-ATGTATGATTGGATAGATTAA 432 > Ahg936476 jgi|Araly1|936476|scaffold_500667.1 Length=381 Score = 150 bits (81), Expect = 6e-36 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 14 TTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACA 73 ||||||| || | |||||||| || | ||||||||||||||| |||||||||||| || Sbjct 59 TTTGCATACTTGGTCATGTATCTGGTGCCGGAATCAGGATCTCTAACGAACTCAAATTCA 118 Query 74 AGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATAC 133 |||||||||| ||||| | |||||||||||||||||||||||||||||||| | ||||| Sbjct 119 AGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGACGTATTAGGTCCAAAAACAATAC 178 Query 134 CAATCGGAC 142 ||||||||| Sbjct 179 CAATCGGAC 187 Score = 134 bits (72), Expect = 6e-31 Identities = 144/178 (81%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 214 CCTAACTTTAGACACTATCAGAACTTTACAGCATTCAAGCTTTTCGCTATGGCAG-ATGA 272 ||||||| |||||| ||||||||||||||||||||||||||||| | | | || || | Sbjct 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTGTTA-AGGATCA 245 Query 273 AGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTAAAGAAAGAAGCTGG 332 |||||| |||||||||||||||||||||||| |||| || ||||| |||||||| | ||| Sbjct 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGAAAGAGGGTGG 305 Query 333 CGAGAAAGTTTTAA-AC-CCAATTTGG-ATGCATAAAGAGTATGCTTGGATTTATTAA 387 || | | |||| | || || | |||||||||||||||| |||||| ||||| Sbjct 306 T-AGCCA-TATTAAGAATCCGGTT-GATATGCATAAAGAGTATGTTTGGATAAATTAA 360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13850478807 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5