BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27331.1
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936481 jgi|Araly1|936481|scaffold_500672.1 577 2e-164
Ahg936480 jgi|Araly1|936480|scaffold_500671.1 505 1e-142
Ahg932605 jgi|Araly1|932605|scaffold_400593.1 315 2e-85
Ahg936476 jgi|Araly1|936476|scaffold_500667.1 150 6e-36
> Ahg936481 jgi|Araly1|936481|scaffold_500672.1
Length=409
Score = 577 bits (312), Expect = 2e-164
Identities = 357/379 (94%), Gaps = 2/379 (1%)
Strand=Plus/Plus
Query 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGCGGATTTAGGATCTCGAACGAACTCAAA 71
Query 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 72 AACAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAAACATA 131
Query 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATAAACTTTTGGCATACAACGCGT 191
Query 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTTTAGACACTATCAGAACTTTACAGCATTC 249
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 192 TTTATGTGTACTTTGAGACAAGGTCCTAACTATAGGCACTATCAGAACTTTACAGCATTC 251
Query 250 AAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGG 309
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 252 AAGCTTTTCGCTATGGCAGATCAAGGAGGCCTATGGGATTGGAGAGCAAGAGAAAATGGG 311
Query 310 ATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTT-TAAACCCAATTTGGATGCATAAAGA 368
||||||||||||||||||||||||||| | |||| ||| | | ||||||||||||||||
Sbjct 312 ATCTATTTAAAGAAAGAAGCTGGCGAGTATGTTTATAA-CGCGGTTTGGATGCATAAAGA 370
Query 369 GTATGCTTGGATTTATTAA 387
||||| |||||| ||||||
Sbjct 371 GTATGATTGGATATATTAA 389
> Ahg936480 jgi|Araly1|936480|scaffold_500671.1
Length=409
Score = 505 bits (273), Expect = 1e-142
Identities = 346/381 (91%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 10 AGCATTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAA 69
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct 12 AGCATTTGCATGCTAGACCATGTATCCGGCGGTGGATTCAGGATCTCGAACGAACTCAAA 71
Query 70 AACAAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATA 129
|||||||| ||| |||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 72 TTCAAGAAACGTCTCTGGATGAGGTGTTATTCCAAAGATGACGTATTAGGTCCAGACATA 131
Query 130 ATACCAATCGGACAACATTATGAAAATCTTTTTGATATTAACTTTTGGCATACAACGCGT 189
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 132 ATACCAATCGGACAACATTATGAAAATCTTTTCGATATTAACTTTTGGCATACAACGCGT 191
Query 190 TTTATGTGTACTTTGAGACAAGGTCCTAACTT-TAGACACTATCAGAACTTTACAGCATT 248
||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||
Sbjct 192 TTTATGTGTACTTTGAGACAAGGTCCTAA-TTATAAACACTATCAGAACTTTACAGTATT 250
Query 249 CAAGCTTTTC-GCTATGGCAGATGAAGGAGGTCT-ATGGGATTGGAGAGCAAGAGAAAAT 306
||||||||| | |||||| ||| ||||||| || |||||||||||||||||||||||||
Sbjct 251 CAAGCTTTTTAG-TATGGCTGATCAAGGAGG-CTTATGGGATTGGAGAGCAAGAGAAAAT 308
Query 307 GGGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTAAACCCAATTTGGATGCATAAA 366
|| |||||||||||||||| |||| ||||| ||||||||||||| ||| |||||||||
Sbjct 309 GGTATCTATTTAAAGAAAGTAGCTAGCGAGCAAGTTTTAAACCCGGTTTATATGCATAAA 368
Query 367 GAGTATGCTTGGATTTATTAA 387
| || || |||||| |||||
Sbjct 369 GTGTTTGATTGGATAAATTAA 389
> Ahg932605 jgi|Araly1|932605|scaffold_400593.1
Length=454
Score = 315 bits (170), Expect = 2e-85
Identities = 315/383 (82%), Gaps = 18/383 (5%)
Strand=Plus/Plus
Query 14 TTTGCATGCTAGACCATGTATCAGGCGGC-GGAATCAGGATCTCGAACGAACTCAAAAAC 72
|||||||||| | ||||||||| ||| | ||||||||||| |||||||||||||| |
Sbjct 59 TTTGCATGCTTGGCCATGTATCCGGC-TCTGGAATCAGGATAGCGAACGAACTCAAATTC 117
Query 73 AAGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATA 132
||||||||||| ||||| | ||||||||||||||||| ||||| |||||||| | ||||
Sbjct 118 AAGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGATGTATTCGGTCCAAAAACAATA 177
Query 133 CCAATCGGACAACAT-TATGA-AAATCTTTTTGATATTAACTTT-T-GGCATACAACGCG 188
||||||||||||||| | ||| | |||||| | |||||| ||| | ||| ||| |||||
Sbjct 178 CCAATCGGACAACATGT-TGACATTTCTTTTCG-TATTAA-TTTATGGGC-TACGACGCG 233
Query 189 TTTTATGTGTACTTTGAGACAAG-GTCCTAACTTTAGACACTATCAGAACTTTACAGCAT 247
||||||||||||||||||||||| | ||||||| || ||| ||||| || ||||||||||
Sbjct 234 TTTTATGTGTACTTTGAGACAAGAG-CCTAACTATAAACATTATCAAAAATTTACAGCAT 292
Query 248 TCAAGCTTTTCGCTATGGCAGATGAAGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATG 307
|||||||||||| | | | ||| | ||||| |||||||| ||||||||||||||| |||
Sbjct 293 TCAAGCTTTTCGGTGTTACGGATCATGGAGGCCTATGGGACTGGAGAGCAAGAGAAGATG 352
Query 308 GGATCTATTTAAAGAAAGAAGCTGGCGAGAAAGTTTTA--AACCCAATTTGGATGCATAA 365
| || |||||||| ||||||| |||| ||| | | ||| || || || ||||||||
Sbjct 353 GAATATATTTAAACAAAGAAGGTGGC-AGACA-TATTAGGAATCCGGTTAATATGCATAA 410
Query 366 AGA-GTATGCTTGGATTTATTAA 387
| | ||||| |||||| |||||
Sbjct 411 A-ATGTATGATTGGATAGATTAA 432
> Ahg936476 jgi|Araly1|936476|scaffold_500667.1
Length=381
Score = 150 bits (81), Expect = 6e-36
Identities = 113/129 (88%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 14 TTTGCATGCTAGACCATGTATCAGGCGGCGGAATCAGGATCTCGAACGAACTCAAAAACA 73
||||||| || | |||||||| || | ||||||||||||||| |||||||||||| ||
Sbjct 59 TTTGCATACTTGGTCATGTATCTGGTGCCGGAATCAGGATCTCTAACGAACTCAAATTCA 118
Query 74 AGAAACTTCTTTGGATGCGGTGTTATTCCAAAGATGACGTATTAGGTCCAAAGATAATAC 133
|||||||||| ||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct 119 AGAAACTTCTCTGGATTAGATGTTATTCCAAAGATGACGTATTAGGTCCAAAAACAATAC 178
Query 134 CAATCGGAC 142
|||||||||
Sbjct 179 CAATCGGAC 187
Score = 134 bits (72), Expect = 6e-31
Identities = 144/178 (81%), Gaps = 8/178 (4%)
Strand=Plus/Plus
Query 214 CCTAACTTTAGACACTATCAGAACTTTACAGCATTCAAGCTTTTCGCTATGGCAG-ATGA 272
||||||| |||||| ||||||||||||||||||||||||||||| | | | || || |
Sbjct 187 CCTAACTATAGACATTATCAGAACTTTACAGCATTCAAGCTTTTTGGTGTTA-AGGATCA 245
Query 273 AGGAGGTCTATGGGATTGGAGAGCAAGAGAAAATGGGATCTATTTAAAGAAAGAAGCTGG 332
|||||| |||||||||||||||||||||||| |||| || ||||| |||||||| | |||
Sbjct 246 AGGAGGCCTATGGGATTGGAGAGCAAGAGAAGATGGAATTTATTTGAAGAAAGAGGGTGG 305
Query 333 CGAGAAAGTTTTAA-AC-CCAATTTGG-ATGCATAAAGAGTATGCTTGGATTTATTAA 387
|| | | |||| | || || | |||||||||||||||| |||||| |||||
Sbjct 306 T-AGCCA-TATTAAGAATCCGGTT-GATATGCATAAAGAGTATGTTTGGATAAATTAA 360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13850478807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5