BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27340.1

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936483 jgi|Araly1|936483|scaffold_500674.1                        697    0.0  


> Ahg936483 jgi|Araly1|936483|scaffold_500674.1
Length=468

 Score =  697 bits (377),  Expect = 0.0
 Identities = 435/463 (94%), Gaps = 4/463 (1%)
 Strand=Plus/Plus

Query  48   CCGGCGATCGCCGGGAAAAGAAATGTGGGCGATTACGAGAGTGATAAGCCGGCGAGTTCA  107
            |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  1    CCGGCGATCGTCGGAAAAAGAAATGTGGGCGATTACGAGAGTGATAAGCCGGCGAATCCA  60

Query  108  TGGAACAAGTTTTATTACT-ATTCCAAAACTCTCAGGTTTCTCTATTGTATCTCCCAAAC  166
            ||||| ||||  | |||||  |||| ||||||||||| ||||||||||||||||||||||
Sbjct  61   TGGAAAAAGTGATGTTACTGTTTCC-AAACTCTCAGGATTCTCTATTGTATCTCCCAAAC  119

Query  167  AAGTTGAGGTAGAGTATGCAGATGGAACCAAGTTCAATTTTTCATCAGAGTTTCTGAGAA  226
            | ||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
Sbjct  120  ACGTTGAGGTAGAGTATTCAGATGGAACAAAGTTCAATTTTTCATCAGAGTTTTTGAGGA  179

Query  227  TTCATAGTCCAGCTGCTGATGGAAAAGTCAGATCAATCGGTGGTGAAAAGGTGATATCTG  286
            |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  180  TTCATAGTCCAGCTGCTGATGGAAAAGTCAGAACAATCGGTGGTGAAAGGGTGATATCTG  239

Query  287  GAAGGCGGTATGTAGGAATCATGTCTGCAGAACCGGTTGGAAACTACGGGGTAAGGTTAG  346
            |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  240  GAAGGCGGTATGTAGGAATCATGTCTGCAGAACCGGTTGGCAACTATGGGGTAAGGTTAG  299

Query  347  TGTTTGATGACTTGCATAGAACAGGGATATATCCATGGGATTATTTCTACGAGCTTGGGA  406
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  300  TGTTTGATGACTTGCATAGAACAGGGATATATCCATGGGATTATTTCTATGAGCTTGGGA  359

Query  407  GCAATAAGTTTGGTCTTATGAGGAA-CTATATCAAGACTCTTCAAAAGCATAATCTCAGC  465
            | |||||||||||||| ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct  360  GTAATAAGTTTGGTCTGATGAG-AAGCTATATCAAGACTCTTCAAAAACATAATCTCAGC  418

Query  466  CGTGAACCTCCTCCTTCAAGAAAGAGATGATTCTGATGATCAA  508
            ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  419  CGTGAACCTCCTCCTTCGAGAAAGAGATGATTCTGATGATCAA  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27791606493


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5