BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27350.2
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484524 jgi|Araly1|484524|fgenesh2_kg.5__516__AT3G27350.1 1251 0.0
Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2 279 3e-74
> Ahg484524 jgi|Araly1|484524|fgenesh2_kg.5__516__AT3G27350.1
Length=1311
Score = 1251 bits (677), Expect = 0.0
Identities = 812/873 (93%), Gaps = 25/873 (3%)
Strand=Plus/Plus
Query 532 ttttttttttAGAATTTGGTTTTGTGTTTTTGATCTTGAGGTTGTAAAATGGGTGAATCT 591
||||||||||||||||| | ||| || |||||||||||||||| |||||||||||||||
Sbjct 100 TTTTTTTTTTAGAATTTTG-TTT-TG--TTTGATCTTGAGGTTG-AAAATGGGTGAATCT 154
Query 592 GCAGTTCTGGTTCATTCTTATTCCTTCGCAGCTCCTATTACTCGTAACGATTCTCATGAG 651
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 155 GCAGTTCTGGTTCATTCTTATTCTTTCGCAGCTCCTATTACTCGTAACGATTCTCATGAG 214
Query 652 GAGAATACGATTCATGCGTTAAGTCAATCAATATCATTTGGGAAATTCATGACAGAGAAT 711
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 215 GAAAATACGATTCATGCGTTAAGTCAATCAATTTCATTTGGGAAATTCATGACAGAGAAT 274
Query 712 CTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAAAAGTATGTTGAAGAAGCAGAGAAA 771
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 275 CTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAGAAGTATGTTGAAGAAGCAGAGAAA 334
Query 772 TACTCACGTCCTGGATCTGTTGCACAGAAA-AAAGCTTTCTTTGAAGCTCATTACAAGAG 830
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 335 TACTCACGTCCTGGATCTGTTGCACA-AAAGAAAGCTTTCTTTGAAGCTCATTACAAGAG 393
Query 831 AATAGCTGAAGCTAAGAAAGCTGCAACGGAAGAACAACCATCCGTTACTCCTGCTGAGGT 890
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 394 AATAGCTGAAGCTAAGAAAGCTGCAACGGAAGAACAACCAACTGTTACTCCTGCTGAAGT 453
Query 891 TTTGCTTCATACTTTGGAAACACAGcctcctcctcctcctcctcctcTGGTG-TTAAAGT 949
||||||||||||||||||||| || |||||||||||||||||||| |||| |||| ||
Sbjct 454 TTTGCTTCATACTTTGGAAACTCAACCTCCTCCTCCTCCTCCTCC---GGTGATTAA-GT 509
Query 950 ATGGTGAAGAAGGACGTGAAAGAAACAGTTTTCAGATTGATGATCATGATGTGACTGATG 1009
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GTGGTGAAGAAGGATGTGAAAGAAACAGTTTTCAGATTGATGATCATGATGTGACTGATG 569
Query 1010 AATTGGAAAATGTGATGTTTGGTGGTGATTATGTTaaggaggaggaggagaagaaggtag 1069
||||||| |||||||||||||||| |||| ||| | |||| | || | | ||||||||
Sbjct 570 AATTGGAGAATGTGATGTTTGGTGATGATGATG--A-GGAG-A--AG-A-A-GAAGGTAG 620
Query 1070 aggaagagttgttgaaggaggaTTGGTCTGTTGGTGAAAAGGAGAAACAACACAGGAAAT 1129
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 621 AGGAAGACTTGTTGAAGGAGGATTGGTCTGTTGGTGAAAAGGAGAAACAACAGAGGAAAT 680
Query 1130 CTG-TAACTAAGAATAGACCGGTGTTTAGATTGTCTTTGGAGAAAACTATCCCTCCGAAA 1188
| | | || ||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 681 C-GATTACGAAGAACAGACCGGTGTTTAGATTGTCTCTGGAGAAAACAATCCCTCCGAAG 739
Query 1189 TCTTTAGATGAGATCTCTTTAACAGAGAAAAGAAGCGAAAGACCGATGACTCAGGTAGAA 1248
||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct 740 TCTCTGGATGAGATATCTTTAACTGAGAAGAGAAGCGAAAGACCGATAACTCAGTTAGAA 799
Query 1249 GAAAAACCGGTTCACCGCCAGAGATTCGGTCTCTTGAGCTGTTTCATAAGTAATGCTAAA 1308
|| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 800 GAGAAACCGATTCACCGTCAGAAATTCGGTCTCTTGAGCTGTTTCATAAGTAATGCTAAA 859
Query 1309 -ACTCAAGATCAGAACCAGAGCAGGAATAAGAGAAAGACGGAGAAGAAGAAGCAGTTTCT 1367
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CA-TCAAGATCAGAATCAGAGCAGGAATAAGAGAAAGACGGAGAAGAAGAAGCAGTTTCT 918
Query 1368 GTGTCTTTGTTTGAAGCCAAAGACTATAAGAGA 1400
||||||||||||||||||||||||| |||||||
Sbjct 919 GTGTCTTTGTTTGAAGCCAAAGACTGTAAGAGA 951
Score = 279 bits (151), Expect = 3e-74
Identities = 187/204 (92%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1398 AGAATGGCACCGATTATGCTCAATTCACACCAGTTTGGAAAAGAGTCCGAGTGCAATAGG 1457
||| ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1109 AGATTGGCACCGATTATACTCTTTTCTCACCAGTTTGGAAAAGAGTCCGAGTGCAATAGG 1168
Query 1458 AATTAGCTTCTTTTGTTTGGTTCTCTTTGAATCTTTGTTATCTGTCTTACTATGTAATGA 1517
|| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1169 AAATAGCTTCCTTTGTTTTGTTCTCTTTAAATCTTTGTTATCTGTCTTACTATGTAATGA 1228
Query 1518 AAGAACAAC---TCCAGTTTCTTGATTTGATCTGATCTTAATCTTGAAAATGGATTGTTG 1574
||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1229 AAGAACAACAACTCCAGTTTCTTGATTTGATCTGATCTTAATCTTGAAT-TGGTTTGTTA 1287
Query 1575 TTGTTAAAGCTATTCACTTTACAC 1598
||| ||||||||||||||||||||
Sbjct 1288 TTGATAAAGCTATTCACTTTACAC 1311
> Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2
Length=1023
Score = 279 bits (151), Expect = 3e-74
Identities = 252/300 (84%), Gaps = 9/300 (3%)
Strand=Plus/Plus
Query 558 TTTTTGATCTTGAGG-TT-G-TAAAATGGGTGAATCTGCAGTTCTGGTTCATTCTTATTC 614
|||| ||| |||||| || | | ||||||||||||||| ||||| ||||||| |||||
Sbjct 44 TTTTCGATTTTGAGGTTTAGTTGCAATGGGTGAATCTGCTGTTCTATTTCATTCCTATTC 103
Query 615 CTTCGCAGCTCCT-ATTACTCGTAACGATTCTCATGAGGAGAATACGATTCATGCG-TTA 672
||| | ||||| || ||||||| || |||| |||||| ||| ||||||||||| ||
Sbjct 104 GTTCTCTCCTCCTCCTT-CTCGTAATGAATCTCTTGAGGATAATCCGATTCATGCGCTT- 161
Query 673 AGTCAATCAATATCATTTGGGAAATTCATGACAGAGAATCTAGAATGGGGGAAATGGTCA 732
||||||||| | |||||||| | ||| ||||||||||||| |||||||| |||||||||
Sbjct 162 AGTCAATCAGTTTCATTTGGTAGGTTCGTGACAGAGAATCTTGAATGGGGAAAATGGTCA 221
Query 733 AGCTTTTCACATAAAAAGTATGTTGAAGAAGCAGAGAAATACTCAC-GTCCTGGATCTGT 791
|| ||||| ||||| |||||||| || ||||| ||||||| ||| | || ||| ||||||
Sbjct 222 AGTTTTTCGCATAAGAAGTATGTCGATGAAGCCGAGAAATTCTCTCAGT-CTGAATCTGT 280
Query 792 TGCACAGAAAAAAGCTTTCTTTGAAGCTCATTACAAGAGAATAGCTGAAGCTAAGAAAGC 851
||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 281 TGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTACAAGAAAATAGCTGAAGCCAAGAAAGC 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61287204205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5