BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27360.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 785 0.0
Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 523 7e-148
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 388 3e-107
> Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1
Length=605
Score = 785 bits (425), Expect = 0.0
Identities = 505/543 (93%), Gaps = 7/543 (1%)
Strand=Plus/Plus
Query 17 ACAGTCTCAACAATCAAAAGCTTCAAATTTTTCATT-GTCAAGAATTCTCAAAATGGCTA 75
||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||
Sbjct 1 ACAATCTCAACAATCAAAAGTTTC-AATTTTTCATTCG-AAAGAATTCTCAAAATGGCTA 58
Query 76 GAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGA 135
|||||||||||||||| ||||||||||||||||||||||| || || |||||||| ||||
Sbjct 59 GAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAACTCGCGA 118
Query 136 CGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 195
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 178
Query 196 GTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGA 255
|||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||
Sbjct 179 GTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAGCTTTTGA 238
Query 256 TCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATC 315
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 TCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTCAAGACGGATC 298
Query 316 TTAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCTTATTTGGTTG 375
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 TGAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCCTATTTGGTTG 358
Query 376 GATTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCTA 435
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTACGATTATGCCTA 418
Query 436 AGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGATTTGAAGAAGATGA 495
||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||
Sbjct 419 AGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGAGCTTAAGATATGATGAAGAGGA 478
Query 496 AGAAGAAAAACAATGGTCTAGTGTAGATTT--GCTTGTTTGCTCTCATAAGATTTGTAGA 553
||||||| || || || ||| | | | ||| ||||||||||| |||| |||| ||||||
Sbjct 479 AGAAGAAGAAGAA-GG-CTACTTTGGGTTTTTGCTTGTTTGCTTTCATTAGATCTGTAGA 536
Query 554 TTC 556
|||
Sbjct 537 TTC 539
Score = 106 bits (57), Expect = 3e-22
Identities = 63/66 (95%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 585 TAGTCTTTTGTTCTGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAA 644
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGACTTTTGTTAAGAAGTGTCTTCCAGATGTTCGATGAAATGCCCAAATGAAAATTTAA 599
Query 645 TCTACT 650
||||||
Sbjct 600 TCTACT 605
> Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1
Length=523
Score = 523 bits (283), Expect = 7e-148
Identities = 397/452 (88%), Gaps = 7/452 (2%)
Strand=Plus/Plus
Query 66 AAAATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAG 125
||||||||| | || |||||||||||| | ||||||||||||||||| ||||| || |||
Sbjct 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
Query 126 CAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 185
||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
Query 186 CACAGATTCCGTCCAGGAACAGTAGCGTT-ACGTGAAATCAGAAAGTATCAAAAAAGCAC 244
|||||||||||||||||||| || ||||| | | |||||||| ||||||||||| || ||
Sbjct 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGA-GAGAAATCAGGAAGTATCAAAAGAGTAC 179
Query 245 AGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTT 304
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 239
Query 305 CAAGACGGATCTTAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 364
|||||||||||| ||||| ||||| ||||| || || |||||||| ||||||||||| ||
Sbjct 240 CAAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGC 299
Query 365 TTAT-TTGGTTGGA-TTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTT 422
|||| ||| |||| || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 300 TTATCTTG-TTGGGCTT-TTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTA 357
Query 423 ACGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGAT 482
|| || ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 358 ACCATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGAGAGGGCTTAAGAC 417
Query 483 TT-GAAGAAGATGAAGAAGAAAAACAATGGTC 513
|| ||||| ||||||||| || ||| |||
Sbjct 418 AACGATGAAGAAGAAGAAGAAGAAGAATAGTC 449
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 388 bits (210), Expect = 3e-107
Identities = 350/418 (84%), Gaps = 7/418 (2%)
Strand=Plus/Plus
Query 68 AATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCA 127
||||||| | || ||||| |||||||| ||||| || ||||| ||||| || || |||||
Sbjct 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
Query 128 ACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACA 187
| | || || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
Query 188 CAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGA 247
||||||| | || ||||| || || ||| | |||||||| |||||||| || ||||| ||
Sbjct 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
Query 248 GCTTTTGATCCGTAAGCTTCCTTTCCAGAGA-TTGGTTCGTGAGATAGCTCAAGATTTCA 306
|||| |||||||||| |||||||||||||| ||| | | ||||| |||||||| ||||
Sbjct 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258
Query 307 AGACGGATCTTAGGTTTC-AGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGCT 365
|||| ||||| | |||| |||||||||| || || |||||||| ||||| |||||||||
Sbjct 259 AGACTGATCTCCG-TTTCCAGAGTAGTGCTGTTGCTGCTCTTCAGGAAGCTGCTGAAGCT 317
Query 366 TAT-TTGGTTGGATTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTTAC 424
|| ||| ||||| | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 318 TACCTTG-TTGGACTCTTTGAAGACACTAATCTTTGTGCTATTCATGCTAAGAGAGTTAC 376
Query 425 GATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGAT 482
|| |||||||||||||| || || ||||| || |||||||| || || ||||| |||
Sbjct 377 TATCATGCCTAAGGATATCCAGCTCGCGAGAAGAATTAGAGGAGAAAGAGCTTA-GAT 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5