BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27380.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936489 jgi|Araly1|936489|scaffold_500680.1 1428 0.0
Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1 977 0.0
Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1 470 3e-131
Ahg322865 jgi|Araly1|322865|fgenesh1_pm.C_scaffold_5000409 361 2e-98
Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1 348 1e-94
Ahg924337 jgi|Araly1|924337|scaffold_105618.1 233 4e-60
> Ahg936489 jgi|Araly1|936489|scaffold_500680.1
Length=881
Score = 1428 bits (773), Expect = 0.0
Identities = 846/881 (96%), Gaps = 6/881 (1%)
Strand=Plus/Plus
Query 69 GATTTCTCCGAG-G-aaaaaaaTGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 126
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTCTCCGAGAGAAAAAAAATGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAA 60
Query 127 CCGTCGAAATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCG 186
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 61 CCGTCGAAATTAGCCACGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCG 120
Query 187 GAGGCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 246
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGCGGAAACAAAAGCTTCGTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAG 180
Query 247 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAA-ATTACCAGATCGA 305
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 181 ATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTT-AAAGATTACCAGGTCGA 239
Query 306 TCTCAAAGATTGTGGTCCAATGGTATTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 365
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TCTCAAGGATTGTGGTCCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGA 299
Query 366 TCCATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 425
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 TCCATCGCTTACCTTCCGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAA 359
Query 426 CATTGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCATCGGAGAC 485
||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| |||
Sbjct 360 CATTGATGGATGTAATGGACTTGCTTGTTTAACGAAGATTCAAGATGGAGCATCGGGGAC 419
Query 486 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGAT-TTGGTTGTTGATATGACTA 544
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 420 GACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATCTT-GTGGTTGATATGACTA 478
Query 545 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 ATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTG 538
Query 605 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATG 598
Query 665 AATGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 724
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGT 658
Query 725 CTTACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATG 784
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 659 CTTACCTTGGTCCAGCTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATG 718
Query 785 AGTACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATA 844
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 719 AGTACACTAAGGAAAGACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATA 778
Query 845 CAATCTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTC 904
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 779 CAATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCAC 838
Query 905 ACATCAAGCAACTTCAGCGTTGAAACAGCTAAGTTTGTGTG 945
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 ACATCAAGCAACTTCAACGTTGAAACAGCTAAGTTTGTGTG 879
> Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1
Length=1029
Score = 977 bits (529), Expect = 0.0
Identities = 749/855 (88%), Gaps = 16/855 (2%)
Strand=Plus/Plus
Query 72 TTCTCCGAGGaaaaaaaTGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGT 130
|||||||| | ||||||| ||| |||||||||||||||| || |||||||| ||| |||
Sbjct 36 TTCTCCGA-G--AAAAATGACGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCGT 91
Query 131 CGA-AATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCGGAG 189
| | ||| ||||||||||| | || ||||||||| ||||||| || |||||| | ||
Sbjct 92 C-ACGGTTATCCACGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAA 150
Query 190 GCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAGATC 249
|| || | |||||||| | |||||| | ||||| ||| |||||||| |||||||||
Sbjct 151 GCACAATCGAAAGCTTCAACCGGCGGC-G--GAGGAGCGAGTTTGAAGACGTTTCAGATC 207
Query 250 TATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAAATTACCAGATCGATCTC 309
||||||||||||||||||||||| || ||||| ||||||||| ||||||| |||||||||
Sbjct 208 TATCGATGGAATCCAGATAATCCTGGAAAGCCTGAGCTTCAAGATTACCAAATCGATCTC 267
Query 310 AAAGATTGTGGTCCAATGGTAT-TAGATGCTTTGATTAAGATCAAAAACGAAATGGATCC 368
|| ||||||||||||||||| | ||||||||||||||||||| || ||||| ||||||||
Sbjct 268 AAGGATTGTGGTCCAATGGT-TCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCC 326
Query 369 ATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACAT 428
|||||| ||||||||| | || ||||||||||| || |||||||| ||||||||||||||
Sbjct 327 ATCTCTCACTTTCCGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACAT 386
Query 429 TGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCAT-CGGAGACGA 487
|||||||||||| || ||||||||||| || |||||| || || | | | |||||||
Sbjct 387 TGATGGATGTAATGGTCTTGCTTGTTTAACGAAGATTGAATCTGGATC-TAAAGAGACGA 445
Query 488 CGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTTGATATGACTAATT 547
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 446 CGATTACGCCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTGGATATGACGAATT 505
Query 548 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTC 607
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 506 TTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTC 565
Query 608 CTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAAT 667
||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 CTGGGAAAGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGAATGTATGAAT 625
Query 668 GTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTT 727
||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 626 GTATTCTCTGTGCTTGTTGTAGCACGTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTT 685
Query 728 ACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGT 787
| ||||| |||||||||||||| || || || |||||||||||||| || || |||||||
Sbjct 686 ATCTTGGCCCAGCTGCTTTGCTTCATGCCAACAGGTGGATAAGCGATAGCCGAGATGAGT 745
Query 788 ACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAA 847
||||||||||||||||||| || |||||||| ||||||||||| || || ||||| ||||
Sbjct 746 ACACTAAGGAAAGACTTGAAGCCATTGACGATGAGTTCAAGCTGTATCGATGCCACACAA 805
Query 848 T-CTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTCAC 906
| || ||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 806 TTCT-GAACTGTGCTCGTGCATGTCCAAAGGGATTGAACCCAGGGAAACAGATTACACAC 864
Query 907 ATCAAGCAACTTCAG 921
|||||||| ||||||
Sbjct 865 ATCAAGCAGCTTCAG 879
> Ahg484525 jgi|Araly1|484525|fgenesh2_kg.5__517__AT3G27360.1
Length=605
Score = 470 bits (254), Expect = 3e-131
Identities = 294/313 (94%), Gaps = 3/313 (1%)
Strand=Plus/Plus
Query 2113 ACAGTCTCAACAATCAAAAGCTTCAAATTTTTCATT-GTCAAGAATTCTCAAAATGGCTA 2171
||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||
Sbjct 1 ACAATCTCAACAATCAAAAGTTTC-AATTTTTCATTCG-AAAGAATTCTCAAAATGGCTA 58
Query 2172 GAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCAACTGGCGA 2231
|||||||||||||||| ||||||||||||||||||||||| || || |||||||| ||||
Sbjct 59 GAACAAAGCAAACAGCCAGAAAATCCACCGGAGGAAAAGCACCAAGGAAGCAACTCGCGA 118
Query 2232 CGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 2291
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGAAAGCAGCAAGAAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACACAGATTCC 178
Query 2292 GTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGAGCTTTTGA 2351
|||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||
Sbjct 179 GTCCAGGAACAGTAGCGTTAAGAGAAATCAGGAAGTATCAAAAAAGCACTGAGCTTTTGA 238
Query 2352 TCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTTCAAGACGGATC 2411
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 TCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTCAAGACGGATC 298
Query 2412 TTAGGTTTCAGAG 2424
| |||||||||||
Sbjct 299 TGAGGTTTCAGAG 311
> Ahg322865 jgi|Araly1|322865|fgenesh1_pm.C_scaffold_5000409
Length=231
Score = 361 bits (195), Expect = 2e-98
Identities = 219/231 (95%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1380 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTTACTATTGGAACAGCAACC 1439
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTCATTATTGGAACAGCAACC 60
Query 1440 GATGTTGCTCCAGCAACTAAACAACAGTTTGAGTTCTTTCCGAGCTTGCGGGAGCATCAG 1499
||||||||||||||||| ||||||| | |||||||||||||||| |||| ||||||| |
Sbjct 61 GATGTTGCTCCAGCAACCAAACAACCGATTGAGTTCTTTCCGAGTTTGCAGGAGCATGAC 120
Query 1500 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTGTGAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTTTGAC 180
Query 1560 TGCAACATAGAAAAACAGCCTCCCGTTTGTGTTCAGTGTTGCCCGATTTGA 1610
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TGCAACATAGAGAAACAGCCTCCCGTTTGCGTTCAGTGTTGCCCGATTTGA 231
> Ahg487869 jgi|Araly1|487869|fgenesh2_kg.6__1003__AT5G10400.1
Length=523
Score = 348 bits (188), Expect = 1e-94
Identities = 239/264 (91%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 2162 AAAATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAG 2221
||||||||| | || |||||||||||| | ||||||||||||||||| ||||| || |||
Sbjct 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
Query 2222 CAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 2281
||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
Query 2282 CACAGATTCCGTCCAGGAACAGTAGCGTT-ACGTGAAATCAGAAAGTATCAAAAAAGCAC 2340
|||||||||||||||||||| || ||||| | | |||||||| ||||||||||| || ||
Sbjct 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGA-GAGAAATCAGGAAGTATCAAAAGAGTAC 179
Query 2341 AGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTT 2400
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 239
Query 2401 CAAGACGGATCTTAGGTTTCAGAG 2424
|||||||||||| ||||| |||||
Sbjct 240 CAAGACGGATCTGAGGTTCCAGAG 263
> Ahg924337 jgi|Araly1|924337|scaffold_105618.1
Length=451
Score = 233 bits (126), Expect = 4e-60
Identities = 209/250 (84%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 2164 AATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAGCA 2223
||||||| | || ||||| |||||||| ||||| || ||||| ||||| || || |||||
Sbjct 20 AATGGCTCGTACCAAGCAGACAGCTAGGAAATCAACAGGAGGCAAAGCACCAAGGAAGCA 79
Query 2224 ACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCACA 2283
| | || || |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 80 ATTAGCAACAAAAGCAGCGAGGAAATCTGCTCCAGCCACCGGAGGAGTGAAGAAGCCTCA 139
Query 2284 CAGATTCCGTCCAGGAACAGTAGCGTTACGTGAAATCAGAAAGTATCAAAAAAGCACAGA 2343
||||||| | || ||||| || || ||| | |||||||| |||||||| || ||||| ||
Sbjct 140 CAGATTCAGACCTGGAACCGTGGCTTTAAGAGAAATCAGGAAGTATCAGAAGAGCACTGA 199
Query 2344 GCTTTTGATCCGTAAGCTTCCTTTCCAGAGA-TTGGTTCGTGAGATAGCTCAAGATTTCA 2402
|||| |||||||||| |||||||||||||| ||| | | ||||| |||||||| ||||
Sbjct 200 GCTTCTGATCCGTAAACTTCCTTTCCAGAGGCTTG-TGAGAGAGATTGCTCAAGACTTCA 258
Query 2403 AGACGGATCT 2412
|||| |||||
Sbjct 259 AGACTGATCT 268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5