BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27390.1
Length=2189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484528 jgi|Araly1|484528|fgenesh2_kg.5__520__AT3G27390.1 3110 0.0
Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1 1009 0.0
> Ahg484528 jgi|Araly1|484528|fgenesh2_kg.5__520__AT3G27390.1
Length=2132
Score = 3110 bits (1684), Expect = 0.0
Identities = 2011/2164 (93%), Gaps = 42/2164 (2%)
Strand=Plus/Plus
Query 4 TTTTCATGACGTCTCGTTTGATCTACACATATTGTTTGACCTCTCTCTATCTCTAAGTTT 63
||||||||||||||| |||||||| || || |||||||||||| |||||||||| |
Sbjct 1 TTTTCATGACGTCTCTTTTGATCT--AC--ATCGTTTGACCTCTCCCTATCTCTAA---T 53
Query 64 ACATATTCGCT-AATGCGTTGAGCTCAAAGCATCCACGACAAGATAAGTAG-aaa-aaaa 120
| | | ||| || || | | | | | | || | |||||||||||||| ||| ||||
Sbjct 54 GCCT-TGAGCTCAA-GCATCCA-C-C-ACG-AT-TA-GACAAGATAAGTAGAAAACAAAA 105
Query 121 aaGACATCCTTTTTTGGttcttcttcttcttcttcttcGGACAAAAAGG-AAGAAGGTGT 179
|||| | | | |||||| | |||||||||||||||||||| |||||||||
Sbjct 106 AAGAAAAAC-------ATCCTTCTT-TGGTTCTTCTTCGGACAAAAAGGTCAGAAGGTGT 157
Query 180 TGACTGATTCTTAAGATGGGTTTGTGTTAAGTTTGTGAGTATAGTTGAAAGTTTCAGTTC 239
||||||| |||| |||||||||||||||||||| |||| || ||||||||| | |||
Sbjct 158 TGACTGAATCTTGAGATGGGTTTGTGTTAAGTTCGTGAATACAGTTGAAAG----A-TTC 212
Query 240 AATTTCAATGGAGCCTCC-AATAGGATTTCGAGCTTCTTTATTCCAATTCTTACTCTTCC 298
|||||||||||||||||| ||| |||||||||||| | || || ||||||||||||||||
Sbjct 213 AATTTCAATGGAGCCTCCAAAT-GGATTTCGAGCTACGTTGTTACAATTCTTACTCTTCC 271
Query 299 TTCCTTATTTCATTGGATTGCTATTTCTGGGTTTCATCAAAGGTATTGTTTTGTGCCCAC 358
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 272 TTCCTTATTTCATTGGATTGCTGTTTCTGGGTTTCATCAAAGGTATCGTTTTGTGCCCAC 331
Query 359 TCGTATGCCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGAGTCTTCTACCAGTCC 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 332 TCGTATGTCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGAGTCTTCTACCCGTTC 391
Query 419 ACATCGTTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAGTAGGACCAATCTTGAAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 ACATCGTTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAGTAGGACCAATCTTGAAGA 451
Query 479 TCTTTCTATGCTTATGTCTTCCTGCTGCCATCATTCTCTGGCCTATTGTTGGTATTTTAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TCTTTCTATGCTTATGTCTTCCTGCTGCCATCATTCTCTGGCCTATTGTTGGTATTTTAG 511
Query 539 GAAGTGTTTTGGGAGGAGCTTTATATGGTTTCTTCTCCCCAATTTTCGCCACCTTTGATG 598
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 512 GGAGTGTTTTGGGAGGAGCTTTATATGGTTTTTTCTCCCCAATTTTCGCCACTTTTGATG 571
Query 599 CTGTTGGTGAAGGCAAGCCTTACCAGTTTTTCCATTGCTTTTATGATGGAACTTGGAGCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CTGTTGGTGAAGGCAAGCCTTACCAGTTTTTCCATTGCTTTTATGATGGAACTTGGAGCA 631
Query 659 CCATGCAACGCAGCTTCACCGTTGTTCGGGATTTTAAAGATGTTTGCTTTCATTCATACT 718
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 632 CCATCCAACGCAGCTTCACCGTTGTCCGGGATTTTAAAGATGTTTGCTTTCACTCATACT 691
Query 719 TCTCACTTATGGATGAGCTGAAACAAAGCTGTCCGGATCGAAAATATTATGAAATAAGGC 778
||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 692 TCTCACTCATGGATGAGCTTAAACAAAGCTGCCCGGATCGCAAATATTATGAAATAAGGC 751
Query 779 TACTTCAACTTCCAGGGGCTTTAGTAGTTTCAGTTCTCGGGATACTTGTTGATCCT-CCG 837
|||||||||||||||||||||| |||||||||||||||||| | ||||||||| | |||
Sbjct 752 TACTTCAACTTCCAGGGGCTTTGGTAGTTTCAGTTCTCGGGGTTCTTGTTGATT-TACCG 810
Query 838 GTTATCTCACTTGTAGCCATATGCAAAAGCCCTTATATGTTGTTCAAAGGATGGCACCGT 897
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 811 GTGATCTCACTTGTAGCCATATGCAAAAGCCCTTACATGTTGTTCAAAGGATGGCACCGT 870
Query 898 TTGTTTCACGACTTGATTGGACGGGAAGGTCCATTCTTGGAGACAATGTGTGTCCCCATA 957
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TTGTTTCATGACCTAATTGGACGGGAAGGTCCATTCTTGGAGACAATGTGTGTCCCCATT 930
Query 958 GCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCGCGGTTATTGGATCAGTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCGCGGTTATTGGATCAGTT 990
Query 1018 ATCTCTAGTATCTTCCTTGGTGCTTATGCAGGAGTAGTCTCATATCAAGAATCATCTTTT 1077
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 991 GTCTCGAGTATCTTCCTTGGTGCTTATGCAGGAGTAGTCTCATATCAGGAATCATCGTTT 1050
Query 1078 TACTATGGACTCTGCTAT-ATAGTTGCCTCTGTCTCCATTTACGACGAGTATAGCACCGA 1136
|||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1051 TACTATGGACTCTGCT-TCATAGTTGCATCTGTGTCCATTTACGACGAGTATAGCACCGA 1109
Query 1137 TATACTTGACTTGCCTGAAGGTTCTTGTTTTCCAAGGCCGAAATATCGAAGAAAGGACGA 1196
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 1110 TATACTTGACTTGCCTGAAGGATCTTGTTTTCCAAGGCCGAAATATCGAAGAGAGGAAGA 1169
Query 1197 GGAACCAACGCCTTTTTCTGGTCCTGTACCAAGACTAGGCTCTGTCAAGAACGCGTCATC 1256
||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1170 GGAACCAACACCTTTTTCTGGTCCTATACCAAGATTAGGCTCTGTCAAGAACGCGTCATC 1229
Query 1257 GATGAGAGGAGGATCAGTCAGAGTCCCTATGATTGATATTAAGCCTCTCGATCTGTTGAA 1316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GATGAGAGCAGGATCAGTCAGAGTCCCTATGATTGATATTAAGCCTCTCGATCTGTTGAA 1289
Query 1317 TGAGCTCTTTGTGGAATGTAGAAGATATGGAGAAGTTTTAGCGACAAAAGGACTGATAAA 1376
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 1290 TGAGCTCTTTGTGGAATGTAGAAGATTTGGAGAAATTTTGGCGACAAAAGGACTGATAAA 1349
Query 1377 CTCGAAAGATATCGAAGAAGCGAGATCTAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTCGAAAGATATCGAAGAAGCGAGATCTAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTT 1409
Query 1437 ACCGGCTTATGGACTTCTTTACGAGATTCTTCGCTCAGTCAAAGCCAATTCTTCCGGCTT 1496
|||||||||| ||||||||| |||||||| ||||| ||||||||||||| | |||||||
Sbjct 1410 ACCGGCTTATTCACTTCTTTATGAGATTCTACGCTCCGTCAAAGCCAATTGTGCCGGCTT 1469
Query 1497 GTTACTAAGTGACGGTGTAACTGAAATAACTACCATGAACCGCCCAAAAGACGTCTTCTT 1556
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1470 GTTACTAAGTGACGGTGTAACTGAAATAACTGTCATGAACCGACCAAAAGACGTCTTCTT 1529
Query 1557 TGATTGGTTTCTGAATCCGTTTTTGATACTAAAGGAGCAAATGAAAGCTACAAACTTGTC 1616
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1530 TGATTGGTTTCTGCATCCGTTGTTGATACTAAAGGAGCAAATGAAAGCTACAAACTTGTC 1589
Query 1617 TGAGGAAGAAGAAGAGTACCTCGGAAGATTAGTTTTGCTATTTGGAGATCCAGAGAGGCT 1676
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1590 CGAGGAAGAAGAAGAGTACCTCGGAAGATTAGTCTTGCTATTTGGAGATCCAGAGAGGCT 1649
Query 1677 AAAGAGCTCGAATGCCATTTCCGCGTCTCCTCCTCTCACCGAACGTAAAAGAGCCGAACT 1736
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1650 AAAGAGCTCGAATGCCATTTCCGCGTCTCCTCCTCTTACCGAGCGTAAAAGAGCCGAACT 1709
Query 1737 CGATGCCTTTGCTCGCAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 CGATGCCTTTGCTCGCAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATT 1769
Query 1797 TCGTCGACATTTTGTGGCATTAGTGAAGAAACTATCGGAAGATTTGGACTTGAAAGACAA 1856
||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 1770 TCGTCGACATTTTGTGGCATTAGTGAAGAAACTATCGGAGGATTTGGACCTAAAAGACAA 1829
Query 1857 CAATTCGGCTAAGGACGAATCGATAACAGAACCGCCAGCTCCGGTTAAGATCATTTCGCG 1916
| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1830 CTATTCGGTTAAGGGCGAATCTATAACAGAACCGCCAGCTCCGGTTAAGATCATTTCGCG 1889
Query 1917 GATATTCAGTCAGAGATCGTTCAGAAGAAAAGGAAGTGTCAATGGATCTGATCAAGAATC 1976
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1890 GATATTCAGTCAGAGATCATTCAGAAGAAAAGGAAGTGTTAATGGATCCGATCAAGAATT 1949
Query 1977 GCAAAAGGGTGTCTCAAGGAATGTAGATATAGTTTAAACATGGAACGTGTGGTGTGGATA 2036
|||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1950 GCAAAAGGGTGTCTCACGGAATGTAGATATCGTTTAAACATGGGACGTGTGGTGTGGATA 2009
Query 2037 TTTGAAACTTAAAACGCATTTAGTTCTTTGCTTTATAAACTTTGTCATTCCTTGTAAAGA 2096
|||||||||||||| || ||| |||||||||| |||||||| || ||||||||||||||
Sbjct 2010 TTTGAAACTTAAAAAGCCTTTGGTTCTTTGCTCCATAAACTT-GTTATTCCTTGTAAAGA 2068
Query 2097 TTTTTCAGACGTTTTTAT-TT--ATTTATAGAACAGTGTATGTTTTCGTTTATGAAACTG 2153
||| |||||||||||| | || ||||||||||||||||||||||||||||||||| |||
Sbjct 2069 TTTATCAGACGTTTTTTTGTTTTATTTATAGAACAGTGTATGTTTTCGTTTATGAATCTG 2128
Query 2154 CTCA 2157
|||
Sbjct 2129 TTCA 2132
> Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1
Length=2184
Score = 1009 bits (546), Expect = 0.0
Identities = 1294/1642 (79%), Gaps = 103/1642 (6%)
Strand=Plus/Plus
Query 243 TTC-AATGGAGCCTCCAATAGG-AT-TTCGAGCTTCTTTATTCCAATTCT-TACTCTTCC 298
||| |||||||||||||| || || || | |||||| | | ||||| | ||||||||
Sbjct 257 TTCTAATGGAGCCTCCAACGGGAATCTT-G-GCTTCTCTGTGGCAATT-TATACTCTTCA 313
Query 299 TTCCTTATTTCATTGGATTGCTATTTCTGGGTTTCATCAAAGGTATTGTTTTGTGCCCAC 358
|||||||||||| |||||| || |||| ||| |||| ||||| || ||||| ||||| |
Sbjct 314 TTCCTTATTTCACTGGATTACTGCTTCTTGGTGTCATTAAAGGCATCGTTTTCTGCCCGC 373
Query 359 TCGTATGCCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGA-GTCTTCTACCAGTC 417
| ||||||| ||||| |||| || ||||| || |||| || | ||||| |||| ||
Sbjct 374 TTATATGCCTTATTGTGGCTATTGGAAACTCTGCAATCAT-CTTAGGTCTTTTACCGGTA 432
Query 418 CACATCG-TTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAG-TAGGACCAATCTTGA 475
||| || |||||||| | ||||| || | |||||| |||| || ||||||| |||||||
Sbjct 433 CAC-GCGATTTGGACTCTATATTCGATAGCGAGTGCTAAAC-AGTTAGGACCGATCTTGA 490
Query 476 AGATCTTTCTATGCTTATGTC-TTCCTGC-TGCCATCATTCTCTGGCCTATTGTTGGTAT 533
|||||||||| || ||||| | ||||| | || |||| ||||||| | | ||| ||||
Sbjct 491 AGATCTTTCTGTGTTTATG-CGTTCCT-CTTGGTGTCATCCTCTGGCTTGTGGTTAGTAT 548
Query 534 TTTAGGAAGTGTTTTGGGAGGAGCTTTATATGG-TTTCTTCTCCCCAAT-TTTCGCCACC 591
|||| ||| || | ||||||||| ||||||| |||||| || ||||| ||| || ||
Sbjct 549 CGTAGGGAGTATTCTCGGAGGAGCTATATATGGTTTTCTT-TCTCCAATATTT-GCTACA 606
Query 592 TTTGATGCTGTTGGTGAAGGCAAGCCTTA-CCAGTTTTTCCATTGCTTTTATGATGGAAC 650
|| ||||||||||| ||||| ||| || | || |||||||||||||||||||||||||||
Sbjct 607 TTCGATGCTGTTGGCGAAGGGAAGTCTAATCC-GTTTTTCCATTGCTTTTATGATGGAAC 665
Query 651 TTGGAGCACCATGCAACGCAGCTTCACCGTTGTTCGG-GATTTTAAAGATGTTTGCTTTC 709
||||||||| | ||| |||| ||||||||||| | | ||||||||||||||||||||||
Sbjct 666 TTGGAGCACTGTTCAAGGCAGTTTCACCGTTGT-CTGCGATTTTAAAGATGTTTGCTTTC 724
Query 710 ATTCATACTTCTCACTTATGGATGAGCT--GAAACAAAGCT-GTCCGGATCGAAAATATT 766
| || ||||| || |||||||||| || ||| || || || ||||||| | ||||
Sbjct 725 ACTCCTACTTTTCTTTTATGGATGATCTTCGAA-CAT--CTAGTGCGGATCGTCACTATT 781
Query 767 ATGAAATAAGGCTACTTCAACTTCCAGGGGCTTT-AGTAGTTTCAGTTCTCGGGATACTT 825
||||||||||| |||||||| ||||||| ||| | | | ||| | |||||||| || |||
Sbjct 782 ATGAAATAAGGTTACTTCAAATTCCAGGCGCTGTGATT-GTTGCGGTTCTCGGAATTCTT 840
Query 826 GTTGATCCTCCGGTTATCTCACT-TGTAGCCATA-TGCAAAAGCCCTTATATGTTGTTCA 883
||| || ||| || || ||||| | |||| || || |||||||| || ||||||||||
Sbjct 841 GTTAATTTTCCAGTAATTTCACTCT-TAGC-ATTGTGTAAAAGCCCGTACATGTTGTTCA 898
Query 884 AAGGATGGCACCGTTTGTTTCACGA-CTTGATTGGACGGGAAGGTCCATTCTTGGAGACA 942
|||| ||||||||||||||||| || || |||||||| |||||||| |||||||| |||
Sbjct 899 AAGGGTGGCACCGTTTGTTTCATGATCTC-ATTGGACGTGAAGGTCCTTTCTTGGAAACA 957
Query 943 ATGTGTGTCCCCATAGCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCA-CGGGCGC 1001
||||||||||| || || ||||| | |||||||||||||||||| ||||| ||| ||
Sbjct 958 ATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTCGGA-GC 1016
Query 1002 GGTTATT-GGATC-AGTTATCTCTAGTATCTTCCTTGGTGCTTATG-CAGGAGTAGTCTC 1058
||| || ||||| | | |||||||| ||||||| |||||||||| | || ||||||||
Sbjct 1017 AGTT-TTAGGATCCA-TGGTCTCTAGTGTCTTCCTCGGTGCTTATGGC-GGTGTAGTCTC 1073
Query 1059 ATATCAAGAATCATCTTT-TTACTAT-GGACTCTGCTATATAGTTGCCTCTGTCTCCATT 1116
|||||| || ||||| || || || | || ||||||||| | ||||| ||||| || ||
Sbjct 1074 ATATCAGGAGTCATCGTTCTT-CT-TCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATA 1131
Query 1117 TACGACGAGTATAGCACCGATATACTTGACTTGCCTGAAGGTTCTTGTTTTCCAAGGCCG 1176
|| || |||||||||| |||| | |||||| |||||||||||||||| ||||| |||||
Sbjct 1132 TATGATGAGTATAGCAACGATGTTCTTGACATGCCTGAAGGTTCTTGCTTTCCCAGGCC- 1190
Query 1177 AA-ATATCGAAGAAAGGACGAGGAAC-C-A--ACGCCTTTTTCTGGTCCTGTACCAAGAC 1231
|| |||||||||||| || |||| | | | ||| | ||||||||| | | ||||||
Sbjct 1191 AATATATCGAAGAAACGAAGAGGT-CGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGAC 1249
Query 1232 TAGGCTCTGTCAAGA-ACGCGTC-ATCGATGAGAGGAGGATCAGTCAGAGTCCCTATGAT 1289
| |||| |||||| | | || ||| | |||||||||||| || || ||| |||||
Sbjct 1250 CAAACTCTTTCAAGACAA-C-TCCATC-A--AGAGGAGGATCAAACAAAGGCCCAATGAT 1304
Query 1290 TGATATTAAGCCTCTCGATCTGTTGAATGAGCTCT-TT-GTGGAATGTAGAAGATATGGA 1347
||| | || || || ||||| ||| | | ||||| || ||||||||||| | | |||
Sbjct 1305 TGACCTGAAACCGCTTGATCTTTTGGA-G-GCTCTATTTGTGGAATGTAGGCGGCACGGA 1362
Query 1348 GAAGTTT-TAGCGACAAAAGG-ACTGATAAACTCGAAAGATATCGAAGAAGCGAGATCTA 1405
|| | || | | || ||||| | | ||||| || ||||| ||||| ||||| | |||||
Sbjct 1363 GA-GATTATGGTAACGAAAGGGATT-ATAAATTCAAAAGACATCGAGGAAGCTAAATCTA 1420
Query 1406 GTAAAGGCAGCCAAGTGATCAGCGTTGGTTTACCGGCTTATGGACTTCTTTACGAGATTC 1465
| |||||||| |||||||||||| |||||||||| |||||| |||||| | ||| ||
Sbjct 1421 GCAAAGGCAGTCAAGTGATCAGCTTTGGTTTACCTGCTTATTCTCTTCTTCAAGAGCTT- 1479
Query 1466 TT-CGCTC-AGTCAAAGCCAATTCTTCCGGCTTGTTACTAAGTGACGGTGTAACTGAAAT 1523
|| ||||| | ||||| | ||||| |||| || ||||| ||||||||||||| || ||
Sbjct 1480 TTACGCTCTA-TCAAATCTAATTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGAT 1538
Query 1524 AACTACCATGAA-CCGCCCAAAAGA--CGTCTTCTTTGATTGGTTTCTGAATCCGTTTTT 1580
|||||||| ||| |||||||||||| ||| || ||||| ||||||||||||||||||||
Sbjct 1539 AACTACCA-GAAACCGCCCAAAAGATGCGT-TT-TTTGACTGGTTTCTGAATCCGTTTTT 1595
Query 1581 GATACT-AAAGGAGCAAAT-GAAAGCTACAAACTTGTCTGAGGAAGAAGAAGAGTACCTC 1638
||| || |||| | || || ||| ||| ||||| | |||| ||||||||||||||| ||
Sbjct 1596 GATCCTTAAAG-ACCAGATCGAA-GCTGCAAACCTATCTGTGGAAGAAGAAGAGTATCTT 1653
Query 1639 GG-AAGATTAGTTTTGCTATTTGGAGAT-CCAGAGAGGCT-AAAGAGCTCGAATGCC-AT 1694
|| || ||| || |||| ||||||||| || ||||| || ||| ||||| | || |
Sbjct 1654 GGTAA-ATTGGTACTGCTCTTTGGAGATTCC-GAGAGACTTAAA-AGCTCCATTGTTGAA 1710
Query 1695 TTCCGCGTCTCCTCCTCTCACCGAACGT-A--AAAGAGCCGAACTCGATGCCTTTGCTCG 1751
| | | ||||||||| | ||||||| | | |||| || ||||| ||||| ||||||||
Sbjct 1711 T-CTGAATCTCCTCCTTTAACCGAAC-TCAGGAAAG-GC-GAACTTGATGCATTTGCTCG 1766
Query 1752 CAGGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATTTC-GTCGACATTTTG 1810
|||| | ||||| |||| ||| | |||||||||||||||||||| | | |||||||||
Sbjct 1767 CAGGCTTCAAGGATTAACCAAATCAGTATCAAGATATCCAACATT-CAGAAGACATTTTG 1825
Query 1811 TGGCATTAGTGAAGAAACTATC 1832
||| | | || |||||||||||
Sbjct 1826 TGGAACTGGTCAAGAAACTATC 1847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82389199935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5