BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27400.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg896646 jgi|Araly1|896646|Al_scaffold_0005_612 1845 0.0
> Ahg896646 jgi|Araly1|896646|Al_scaffold_0005_612
Length=1239
Score = 1845 bits (999), Expect = 0.0
Identities = 1165/1245 (94%), Gaps = 12/1245 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCGTATTCTAATAATCATTTTGCATACGCATTTCTACTTCTTCTAACAATCGGT 60
||| |||||||||||| |||| |||||| || || ||||||||||||||| ||||||||
Sbjct 1 ATGTTTTCGTATTCTAGTAATTGTTTTGCTTATGCTTTTCTACTTCTTCTATCAATCGGT 60
Query 61 AACAC-GCTTGCATTTTCTTCGAGT-TTGCCGGATCATGTTCAAGATCCAAATCTAGTCG 118
||||| | ||||||| ||||||||| | | || ||||||||||||||||||||||||||
Sbjct 61 AACACAG-TTGCATTGTCTTCGAGTACT-CTGGCTCATGTTCAAGATCCAAATCTAGTCG 118
Query 119 TTGACGACGTTAACAGAAGTGTATTCAATGCGTCAAGGAGGAGCTTGGCCTACCTATCTT 178
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGAAGAAGTTAACAGAAGTGTATTCAATGCGTCAAGGAGGAGCTTGGCCTACCTATCTT 178
Query 179 GTAGAACCGGAAATCCTATTGACGATTGTTGGCGGTGTGACCCTAATTGGGAAACAAACC 238
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 GCAGAACCGGAAATCCTATTGACGATTGTTGGCGGTGTGACCCGAATTGGGAAACAAACC 238
Query 239 GCCAACGGTTAGCAGATTGTGCCATTGGATTTGGCAAAAATGCTATCGGAGGGCGCAAAG 298
||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || | |
Sbjct 239 GCCAACGTTTAGCAGATTGTGCCATTGGGTTTGGCAAAAACGCTATCGGAGGCCGTGATG 298
Query 299 GTCGAATCTATGTAGTTACGGATCCTGCCAACGACGATCCCGTAAACCCTAGACCTGGGA 358
|||||||||||||||| || ||||| |||||||||||||| |||||||||||||| || |
Sbjct 299 GTCGAATCTATGTAGTAACAGATCCGGCCAACGACGATCCAGTAAACCCTAGACCCGGAA 358
Query 359 CTCTAAGATATGCAGTGACACAAGAAGAACCATTATGGATCATTTTCAAGAGAGATATGG 418
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 CTCTAAGATATGCAGTCACACAAGAAGAACCATTATGGATCATTTTCAAGCGAGATATGG 418
Query 419 TCATTAGGCTCAAAAAAGAACTTATCATCACATCTTTCAAGACCATTGATGGTAGAGGCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCATTAGGCTCAAAAAAGAACTTATCATCACATCTTTCAAGACCATTGATGGTAGAGGCT 478
Query 479 CGAGTGTTCACATTACCGATGGACCATGCTTAAAGATCCACTATGCAAC-TAACATCATA 537
| ||||||||||| ||| ||||||||||||||||||| |||||||| || |||||||||
Sbjct 479 CAAGTGTTCACATAACCAATGGACCATGCTTAAAGATTCACTATGC-ACATAACATCATC 537
Query 538 ATTCATGGCATTAACATCCATGACTGTAAACCAGGATCAGGTGGCATGATTAAAGAT-GG 596
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 538 ATTCATGGTATTAACATCCATGACTGCAAACCAGGATCAGGTGGCATGATTAAAGATCAG 597
Query 597 TCCACATCACACCGGG-TGGTGGAT-GCAGTCCGATGGAGACGCGGTGGCGATATTTGGA 654
||||||||||||||| | || || || |||||||||||||| |||||||||||||||
Sbjct 598 -CCACATCACACCGGGAT-GTATATCCCA-TCCGATGGAGACGCCGTGGCGATATTTGGA 654
Query 655 GGGAAACACGTGTGGATTGACCATTGCTCGTTGTCGAACTGCGATGATGGACTCATAGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGGAAACACGTGTGGATTGACCATTGCTCGTTGTCGAACTGCGATGATGGACTCATAGAC 714
Query 715 GCTATACATGGTTCCACGGCTATAACCATATCGAACAATCATATGACGCACCATGATAAG 774
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 715 GCTATACATGGGTCAACGGCTATAACCATATCGAACAATCACATGACGCACCATGACAAG 774
Query 775 GTCATGCTTTTAGGACATAGCGATAGTTACACGCAGGACAAGAACATGCAAGTCACAATT 834
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTCATGCTTTTAGGGCATAGTGATAGTTACACGCAGGACAAGAACATGCAAGTCACAATT 834
Query 835 GCGTTTAACCATTTCGGAGAAGGACTCGTTCAAAGAATGCCACGGTGCAGGCATGGATAT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCGTTTAACCATTTCGGAGAAGGACTCGTTCAAAGAATGCCACGGTGCAGGCATGGATAT 894
Query 895 TTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTATGCAATCGGTGGAAGTGCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTATGCAATCGGTGGAAGTGCT 954
Query 955 TCTCCAACTATATACAGCCAAGGGAATAGATTTCTTGCTCCTAACACCCGCTTTAATAAA 1014
|||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 955 TCTCCAACGATATACAGCCAAGGCAATAGATTTCTTGCTCCCAACACCCGATTTAATAAA 1014
Query 1015 GAGGTTACAAAACATGAAGATGCACCCGAAAGCAAATGGAGAGATTGGAATTGGAGATCG 1074
|||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1015 GAGGTTACGAAACATGAAGATGCACCCGAAAGCCAATGGAGAGACTGGAATTGGAGATCG 1074
Query 1075 GAAGGCGATATGTTGTTGAACGGAGCTTATTTCCGCGAGTCCGGTGCTGAAGCTCCGTCT 1134
||||| |||||||| ||||||||||| |||||||||||||||||||||| | |||| |||
Sbjct 1075 GAAGGGGATATGTTATTGAACGGAGCCTATTTCCGCGAGTCCGGTGCTGGATCTCCCTCT 1134
Query 1135 ACTTATGCAAGAGCTTCAAGCCTGAGTGCGAGGCCATCGTCACTTGTGGGTTCCATCACC 1194
||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 1135 ACTTATGCAAGAGCTTCGAGCCTGAGTGCAAGACCATCGTCTCTTGTGGGTTCCATCACG 1194
Query 1195 ACGACAGCAGGCACTTTGAGTTGTCGGCGAGGCCGTCGCTGTTAA 1239
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 ACGACAGCAGGCACTTTGAGTTGTCGACGAGGCCGTCGCTGTTAA 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5