BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G27410.1

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936494 jgi|Araly1|936494|scaffold_500685.1                        590    3e-168


> Ahg936494 jgi|Araly1|936494|scaffold_500685.1
Length=449

 Score =  590 bits (319),  Expect = 3e-168
 Identities = 380/408 (93%), Gaps = 9/408 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGAGTCATTTCTTCCTTGTCTTCATTTTCGTAATTCTAACCGTGGCTAATGGAATT  60
            |||||||| || |||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct  21   ATGGCGAGCCACTTCTTCCTCGTCTTCATTCTCGTAATTCTAACCGTCGCTAATGGAATT  80

Query  61   TCAGCAGCTGATTCTGAAAAGTCTCAATCGCCATCTTCATCAAAGACTCTTGCTGACAAC  120
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  81   TCAGCAGCTGACTCTGAAAAGTCTCAAGCGCCATCTTCATCAAAGACTCTTGCTGACAAC  140

Query  121  AAACCAACAGTAGATAACTCTACAAAGAGTTTGATTGATAGTCTTGGTCCATCTCAAGAT  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  141  AAACCAACAGTAGATAACTCTACAAAGAGCTTGATTGATAGTCTTGGTCCATCTCAAGAT  200

Query  181  TATCCGGATTACGAAATCCCCTTAGAACTTGCACCAGACGGTGTTGTGGTGGTGGGGGAT  240
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  201  TATCCGGATTACGAAATCCCCTTAGAACTTGCACCAGACGGTGTCGTGGTGGTGGGGGAT  260

Query  241  TACGCGCCCATTAGTCCAA--GA-GGAA--C---C-CCCGATACGCTTGCTCAATCTGAA  291
            |||| |||||||||||| |  |  ||||  |   | |||||||||||||| ||| |||||
Sbjct  261  TACGTGCCCATTAGTCCCATCGGTGGAAGACAGACTCCCGATACGCTTGCACAACCTGAA  320

Query  292  GCGGATCAGGATGTCAAAACCTCGACATCTAGCTCCGCCTCTAGATCTTCTTCAACCGTT  351
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  321  GCGGATCAGGATGTCAAATCCTCGACATCTAGCTCCGCCTCTAGATCTTCTTCAACCATT  380

Query  352  TTGGCTATTGTTGTTGTGATGGGAGGAGCCAGCTTATTTTTCTTTTGA  399
            |||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct  381  TTGGCTGTTGTTGTTGCGATGGGAGGAGCCAGCTTGTTTTTCTTTTGA  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14308345875


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5