BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27415.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value Ahg484531 jgi|Araly1|484531|fgenesh2_kg.5__523__AT3G27415.1 1134 0.0 > Ahg484531 jgi|Araly1|484531|fgenesh2_kg.5__523__AT3G27415.1 Length=889 Score = 1134 bits (614), Expect = 0.0 Identities = 776/853 (91%), Gaps = 16/853 (2%) Strand=Plus/Plus Query 3 ACTAGCCATGCAAGGATCATTAGAAAATGAATGTGATTAAATTACAAATAGACCCTTCGA 62 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1 ACTAGCCATGCAAGGATCATTAGAAAATGGATGTAATTAAATTACAAATAGACCCTTCGA 60 Query 63 ACAATGAGAATCTCATG--G-TTATTGTTATAATGACTAAAGATTACATAAACATAAATA 119 | |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 61 ATTATGAGAATCTCATGATGATTATTGTTATAGTGACTAAAGATTACATAAACATAAATA 120 Query 120 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCGTACTATGCACGAATT 179 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCATACTATGCACGAATT 180 Query 180 TAACGTGTGAAAAATCGGGCC-GGAGAACAAACTGTTTTAAAATAAA-CCCAAAAA-TTG 236 |||||||| |||||| ||| | |||| ||||||||||||| ||| |||||||| || Sbjct 181 TAACGTGTTAAAAAT-GGGACTGGAGCGTGAACTGTTTTAAAACAAAACCCAAAAAATTT 239 Query 237 AAATATGAAACGTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGT 296 |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| || Sbjct 240 AAATATGATACGTATAATATAATCTTAAATGTAATATGAAATCTCCAAGTAAATA---GT 296 Query 297 AATATTCAATCATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGA 356 ||| ||||||||||||||||||| |||||||||||| |||| ||||||||| |||| ||| Sbjct 297 AATCTTCAATCATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGA 356 Query 357 GATCACAAGCGATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCC 416 ||| ||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| Sbjct 357 GATGACAAGCGATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCC 416 Query 417 AGTTCCGTCATCGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476 |||||| || || || ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 417 AGTTCCTTCGTCCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476 Query 477 AGGTGCGTCAGAGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536 ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 477 AGGTGCGTCGGACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536 Query 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCT 593 |||||||||||||||||||||||||||||| |||| | | |||||||||||||||||| Sbjct 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCT 596 Query 594 TGGAGTTCCGGTGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGG 653 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 597 TGGAGTTCCGGTGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGG 656 Query 654 GGCGGAGGCCGTGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGA 710 |||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || Sbjct 657 AGCGGAGGCGGTGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGA 716 Query 711 GTTCTTTTCGCCGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGAC 770 |||||||||||||||||||||||| |||||||||| ||||||||||||||| || || || Sbjct 717 GTTCTTTTCGCCGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATAC 776 Query 771 GGCGGTGATGGCCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTT 830 || |||| ||| || || |||||||||||||||||||| |||||||||| ||||||||| Sbjct 777 AGCCGTGACGGCTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTT 836 Query 831 GTGGTGAATGTGA 843 || |||||||||| Sbjct 837 GTCGTGAATGTGA 849 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34386871134 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5