BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27415.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484531 jgi|Araly1|484531|fgenesh2_kg.5__523__AT3G27415.1 1134 0.0
> Ahg484531 jgi|Araly1|484531|fgenesh2_kg.5__523__AT3G27415.1
Length=889
Score = 1134 bits (614), Expect = 0.0
Identities = 776/853 (91%), Gaps = 16/853 (2%)
Strand=Plus/Plus
Query 3 ACTAGCCATGCAAGGATCATTAGAAAATGAATGTGATTAAATTACAAATAGACCCTTCGA 62
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1 ACTAGCCATGCAAGGATCATTAGAAAATGGATGTAATTAAATTACAAATAGACCCTTCGA 60
Query 63 ACAATGAGAATCTCATG--G-TTATTGTTATAATGACTAAAGATTACATAAACATAAATA 119
| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct 61 ATTATGAGAATCTCATGATGATTATTGTTATAGTGACTAAAGATTACATAAACATAAATA 120
Query 120 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCGTACTATGCACGAATT 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ACACAAACTAAACATTTGTAACAACATCAAATATCCTAACCTCCATACTATGCACGAATT 180
Query 180 TAACGTGTGAAAAATCGGGCC-GGAGAACAAACTGTTTTAAAATAAA-CCCAAAAA-TTG 236
|||||||| |||||| ||| | |||| ||||||||||||| ||| |||||||| ||
Sbjct 181 TAACGTGTTAAAAAT-GGGACTGGAGCGTGAACTGTTTTAAAACAAAACCCAAAAAATTT 239
Query 237 AAATATGAAACGTATAATATAATCTTAAATGTAGTATGAAATCTCCAAGAAAATACTAGT 296
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 240 AAATATGATACGTATAATATAATCTTAAATGTAATATGAAATCTCCAAGTAAATA---GT 296
Query 297 AATATTCAATCATATGAAGAAAAGCCATGCAACGGCTGCGAGAACAGAGCCCGAGACAGA 356
||| ||||||||||||||||||| |||||||||||| |||| ||||||||| |||| |||
Sbjct 297 AATCTTCAATCATATGAAGAAAAACCATGCAACGGCGGCGATAACAGAGCCGGAGATAGA 356
Query 357 GATCACAAGCGATGAGGCTCCTGCCGCAGGAGCCGAAGCTTCAGGGCCGTCACTGGCGCC 416
||| ||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 357 GATGACAAGCGATGAAGCTCTTGCCGTTGGAGACGAAGCTTCAGGGCCGTCACTGGCGCC 416
Query 417 AGTTCCGTCATCGGAAGATGGAGACATTTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476
|||||| || || || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 AGTTCCTTCGTCCGATGATGGAGACATGTCTGGAGTCGGAGCTGGCGGAGAGGAGGCGGT 476
Query 477 AGGTGCGTCAGAGGAGCTGGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGGTGCGTCGGACGAGCTTGTAGGACCTTCGGAAGAATCACCGGAGCTTGAGTCAGGGCT 536
Query 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTTGGAGA-TG-G-GGAAGATGGGGAAGGGCT 593
|||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||
Sbjct 537 TGAAGCCGGAGTTTTGGCTGATGATGACTTCGGAGGCTTTGCGGAAGATGGGGAAGGGCT 596
Query 594 TGGAGTTCCGGTGGAATTTTTCTTGGCCATGGTTGGAGCAGCTGTAGGCGGTGAGGTTGG 653
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 597 TGGAGTTCCGGTGGAGTTTTTCTTGGCCATGGTCGGAGCAGCAGTAGGCGGTGAGGTTGG 656
Query 654 GGCGGAGGCCGTGGGTG---ATTTTGGGGATGCTGCGGCGGCGGGAGAAGGAGAGGTAGA 710
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 657 AGCGGAGGCGGTGGGTGGTGATTTTGGGGATGCTGCGGCGGCAGGAGAAGGAGAGGTTGA 716
Query 711 GTTCTTTTCGCCGTTGGCTTTCGGTGCGTTTGCCGGTGTTGGAGGATCGGCGGCCAAGAC 770
|||||||||||||||||||||||| |||||||||| ||||||||||||||| || || ||
Sbjct 717 GTTCTTTTCGCCGTTGGCTTTCGGCGCGTTTGCCGATGTTGGAGGATCGGCAGCTAATAC 776
Query 771 GGCGGTGATGGCCAAGGCAGCCACGGCGAGAGATAGGAGTTTAAGTGTCATTGTCATTTT 830
|| |||| ||| || || |||||||||||||||||||| |||||||||| |||||||||
Sbjct 777 AGCCGTGACGGCTAATGCGGCCACGGCGAGAGATAGGAGCTTAAGTGTCACTGTCATTTT 836
Query 831 GTGGTGAATGTGA 843
|| ||||||||||
Sbjct 837 GTCGTGAATGTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5