BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G27420.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322871 jgi|Araly1|322871|fgenesh1_pm.C_scaffold_5000415 1079 0.0
> Ahg322871 jgi|Araly1|322871|fgenesh1_pm.C_scaffold_5000415
Length=732
Score = 1079 bits (584), Expect = 0.0
Identities = 683/732 (93%), Gaps = 1/732 (0%)
Strand=Plus/Plus
Query 108 ATGCCTAAAAGAACAGCAGAAGCGTGTCCATCATCTGAAATCCAAAGAAGCAGAGGAGAT 167
|||||||||||||||||||||||| |||||||| ||||| | ||||||| || | ||||
Sbjct 1 ATGCCTAAAAGAACAGCAGAAGCGAGTCCATCAACTGAAGTTCAAAGAAACAAACCAGAT 60
Query 168 ACTTTTGGTAGTTACAGATCTCAAGTAGCTGAGCTTTTGTCTCTAGGTGAGAGGATCTCA 227
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACTTTTGGTAATTACAGATCTCAAGTAGCTGAGCTTTTGTCTCAAGGTGAGAGGATCTCA 120
Query 228 CATCATGATCAACAAGAAGCCAATGAGAGGCATTCTGAGAGTGTTATAGGAGCTGGGATG 287
||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 121 CATCATGATCAACAACAAGCCAATGAGAGGCATTCTGAGAGTGTAATAGGAGATGGCATG 180
Query 288 TCAAATGTTGAGAAAGATAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAAGT 347
|| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 TCGAATCTCGAGAAAGAGAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAACT 240
Query 348 CCAGAAGTTGATGAGATGCAGGAATGTGTACGCTCTCTGTATCTAATTTCTCAGCTAGGG 407
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 241 CCAGAAGTTGATGAGATGCAGGAATGTGTATGCTCTCTGTACCTGATTTCTCAGCTAGGG 300
Query 408 AACAAATGTCAGTCATCGTCGCCGAGCGATTTTGTTCCTGAAGAAACCGGAGGAGCGAGA 467
||||||||||||||||| || |||||| || |||||||||||||| ||||||||||||||
Sbjct 301 AACAAATGTCAGTCATCCTCACCGAGCAATCTTGTTCCTGAAGAATCCGGAGGAGCGAGA 360
Query 468 GAAGATGATATTCAACTACTTCTGAGGTCTGACTCTGATATGGTCAAGAACATAACGTCA 527
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GAAGATGATATTCAACTACTTCTGAGGTCTGACCCTGATATGGTCAAGAACATAACGTCC 420
Query 528 CAGTATTCAAATGTTCTGCTGTCCAAACTGGACAATATGCAGCAGGAACTCGAGAGACTT 587
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 421 CAGTATTCAAATGTTCTGCTGTCTAAACTGGACAATATGCAGCAGGAACTCGAGAAACTT 480
Query 588 CTTGACGATGTGGTGGCGACTTGCAGACCTATGACTCGTGGTGAAATTCGGGAGCTTCAG 647
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 CTTGATGATGTGGTGGCGACTTGCAGACCTATGACTCGTGTTGAAATTCGGGAGCTTCAG 540
Query 648 AAATCGATCAAGGAGCTGCCTGAGAGGAATCTCAACCGCGTCGCTGAAATAGTAGGAAAT 707
|| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 AAGTCAATCAAGGAGCTACCTGAAAGAAATCTCAACCGCGTCGCTGAAATAGTAGGAAAC 600
Query 708 CATTGCATAGCATCTGGCAGAGATTTCAACGATAAGGTTATCGTCAACCTTGATCAGGCG 767
|||| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CATTACATAACATCTGACAAAGATTTCAACGATAAGGTTATCGTCAACCTGGATCAGGCG 660
Query 768 GACAAGGTCATGTTATGGAGATTGCATTTCTATGTAGGAGCAGTCAAGAG-GCCCAGAAG 826
||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 661 GACAACATCATGCTATGGAGATTGCATTTCTATGTACGAGCAGTCAAGAGTGCCCAGAAG 720
Query 827 CTCGCTCCCTAG 838
||||||||||||
Sbjct 721 CTCGCTCCCTAG 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5