BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G27420.1 Length=1004 Score E Sequences producing significant alignments: (Bits) Value Ahg322871 jgi|Araly1|322871|fgenesh1_pm.C_scaffold_5000415 1079 0.0 > Ahg322871 jgi|Araly1|322871|fgenesh1_pm.C_scaffold_5000415 Length=732 Score = 1079 bits (584), Expect = 0.0 Identities = 683/732 (93%), Gaps = 1/732 (0%) Strand=Plus/Plus Query 108 ATGCCTAAAAGAACAGCAGAAGCGTGTCCATCATCTGAAATCCAAAGAAGCAGAGGAGAT 167 |||||||||||||||||||||||| |||||||| ||||| | ||||||| || | |||| Sbjct 1 ATGCCTAAAAGAACAGCAGAAGCGAGTCCATCAACTGAAGTTCAAAGAAACAAACCAGAT 60 Query 168 ACTTTTGGTAGTTACAGATCTCAAGTAGCTGAGCTTTTGTCTCTAGGTGAGAGGATCTCA 227 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 ACTTTTGGTAATTACAGATCTCAAGTAGCTGAGCTTTTGTCTCAAGGTGAGAGGATCTCA 120 Query 228 CATCATGATCAACAAGAAGCCAATGAGAGGCATTCTGAGAGTGTTATAGGAGCTGGGATG 287 ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 121 CATCATGATCAACAACAAGCCAATGAGAGGCATTCTGAGAGTGTAATAGGAGATGGCATG 180 Query 288 TCAAATGTTGAGAAAGATAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAAGT 347 || ||| | |||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 181 TCGAATCTCGAGAAAGAGAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAACT 240 Query 348 CCAGAAGTTGATGAGATGCAGGAATGTGTACGCTCTCTGTATCTAATTTCTCAGCTAGGG 407 |||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| Sbjct 241 CCAGAAGTTGATGAGATGCAGGAATGTGTATGCTCTCTGTACCTGATTTCTCAGCTAGGG 300 Query 408 AACAAATGTCAGTCATCGTCGCCGAGCGATTTTGTTCCTGAAGAAACCGGAGGAGCGAGA 467 ||||||||||||||||| || |||||| || |||||||||||||| |||||||||||||| Sbjct 301 AACAAATGTCAGTCATCCTCACCGAGCAATCTTGTTCCTGAAGAATCCGGAGGAGCGAGA 360 Query 468 GAAGATGATATTCAACTACTTCTGAGGTCTGACTCTGATATGGTCAAGAACATAACGTCA 527 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 GAAGATGATATTCAACTACTTCTGAGGTCTGACCCTGATATGGTCAAGAACATAACGTCC 420 Query 528 CAGTATTCAAATGTTCTGCTGTCCAAACTGGACAATATGCAGCAGGAACTCGAGAGACTT 587 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 421 CAGTATTCAAATGTTCTGCTGTCTAAACTGGACAATATGCAGCAGGAACTCGAGAAACTT 480 Query 588 CTTGACGATGTGGTGGCGACTTGCAGACCTATGACTCGTGGTGAAATTCGGGAGCTTCAG 647 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 481 CTTGATGATGTGGTGGCGACTTGCAGACCTATGACTCGTGTTGAAATTCGGGAGCTTCAG 540 Query 648 AAATCGATCAAGGAGCTGCCTGAGAGGAATCTCAACCGCGTCGCTGAAATAGTAGGAAAT 707 || || ||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 541 AAGTCAATCAAGGAGCTACCTGAAAGAAATCTCAACCGCGTCGCTGAAATAGTAGGAAAC 600 Query 708 CATTGCATAGCATCTGGCAGAGATTTCAACGATAAGGTTATCGTCAACCTTGATCAGGCG 767 |||| |||| |||||| || |||||||||||||||||||||||||||||| ||||||||| Sbjct 601 CATTACATAACATCTGACAAAGATTTCAACGATAAGGTTATCGTCAACCTGGATCAGGCG 660 Query 768 GACAAGGTCATGTTATGGAGATTGCATTTCTATGTAGGAGCAGTCAAGAG-GCCCAGAAG 826 ||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 661 GACAACATCATGCTATGGAGATTGCATTTCTATGTACGAGCAGTCAAGAGTGCCCAGAAG 720 Query 827 CTCGCTCCCTAG 838 |||||||||||| Sbjct 721 CTCGCTCCCTAG 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37322335743 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5